Rh5BG025000

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
1769295 .. 1772312
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG025000.1

Sequence Viewer

Length: 1395 bp
ATGGCATATACTAAGCTCCACCTCTCAACCCTCTACTTCTTCTTGGTCATCCTCACTCTACTACTCTCCACATCCTCAAAAGCTCAATCTCCGCAAATTCAGGACGAAGACAGAGAGCCATTTGTTGGAGTGAACATAGGCACCGACGTTTCGAATCTCCTCTCCCCATCCGACCTCGTTTCGTTTCTCCAACTCCAGAAAATCACCCACATCCGTCTCTACGATGCCGACCCCGACATTCTCAAAGCCTTGGCCAAAACCAAGATCCGGGTCATCATCAGCGTACCCAATAACCAGCTCATCGCAATTGGGTCCTCCAACACCACCGCCGCTTCCTGGGTCGGTCGAAACGTCGTCGCTTACTACCCACAAACCCTAATCACGGGCATTGCGGTTGGGGATGAAGTCCTCACCACAGTGCCCTCTTCAGCTCCTCTGCTTGTTCCTGCAATTGAGTCCCTTTACAGTGCTCTAGTGGCTTCAAATTTACACACCAAGGTCAAGATTTCGACTCCGAATGCGGCCTCTATTATTCTCGACCCTTTCCCACCTTCTCAGGCCTTCTTCAATCAGAGCTTGAGTGACATTGTGCTGCCCTTGCTTCGGTTCTTGTCGAGAACCGGGTCTCCCTTGATGATGAATCTGTATCCTTACTATGTGTTTATGCAGAACAAAGGTGTGGTGCCTCTGGATAATGCCCTGTTCAAGCCTTTGACGCCCTCCAAAGAAATGGTGGATCCCAATACTCTGCTTCATTATACGAATGTGTTGGATGCTATGATTGATGCTGCTTATTTTTCGATGAAGAATTTGAATGTGACTGATGTTATGGTGCTTGTTACCGAGAGTGGTTGGCCTTCAAAAGCTGATGCTAAGGAGCCTTATGCTACTATTGACAATGCGGATACTTACAATTCGAATTTGATTAAGCATGTTTTTGATCGTAGTGGGACTCCTTTGCATCCTGAGACCACCTCGAGTGTGTTCCTTTATGAGTTGTTCAATGAAGATTTGAGGTCTCCGCCGGTTTCTGAGGCCAATTGGGGCTTGTTTTATGGCAATTCGAGCGCAGTGTATTTGCTTCATGTTTCGGGGAGTGGGACTTTTTTGGCTAATGATACAACGAACCAGACATTTTGCATTGCCATGGATGGGGTTGATGCAAAGTCTTTGCAAGCAGCTTTGGATTGGGCTTGTGGACCGGGGCGGTCTAATTGCACAGAGATTCAGCCTGGGGAGAGTTGTTACTCTCCTAACAATGTGAAAAGCCATGCTTCTTATGCTTTTGATAGCTATTACCAGAAGCAAGGAAAGGCTGCTGGGTCTTGTGATTTCAAAGGTGTAGCCACCATTACCACCACTGACCCAAGTAAGTGCTCTACTTCTGCATTATAG

Protein Analysis

464

Amino Acids

50.45

Weight (kDa)

5.26

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 42 - 361 1.9e-69 Glycosyl hydrolases family 17
X8 PF07983 379 - 450 3.8e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 140, 682
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 8 cut(s) 92, 327, 330, 392, 521, 902, 1022, 1207
AclWI GGATC 3 cut(s) 259, 731, 744
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 4 cut(s) 96, 484, 808, 919
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 716
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 6 cut(s) 125, 267, 336, 382, 603, 1152
AgsI TTSAA 7 cut(s) 483, 568, 706, 814, 861, 1003, 1336
AjnI CCWGG 2 cut(s) 335, 1231
AleI CACNNNNGTG 1 cut(s) 416
AloI GAACNNNNNNTCC 2 cut(s) 610, 642
AluBI AGCT 8 cut(s) 16, 83, 298, 431, 576, 866, 1181, 1293
AluI AGCT 8 cut(s) 16, 83, 298, 431, 576, 866, 1181, 1293
Alw21I GWGCWC 2 cut(s) 472, 1379
Alw26I GTCTC 4 cut(s) 221, 630, 962, 1023
AlwI GGATC 3 cut(s) 259, 731, 744
Ama87I CYCGRG 1 cut(s) 976
AoxI GGCC 5 cut(s) 252, 522, 558, 854, 1035
ApeKI GCWGC 4 cut(s) 592, 788, 1178, 1316
ApoI RAATTY 4 cut(s) 96, 484, 808, 919
AspLEI GCGC 1 cut(s) 1070
AspS9I GGNCC 2 cut(s) 312, 1199
AsuC2I CCSGG 3 cut(s) 269, 622, 1203
AsuHPI GGTGA 2 cut(s) 196, 403
AsuII TTCGAA 2 cut(s) 152, 917
AvaI CYCGRG 1 cut(s) 976
AvaII GGWCC 2 cut(s) 312, 1199
BaeGI GKGCMC 1 cut(s) 423
BalI TGGCCA 1 cut(s) 254
BamHI GGATCC 1 cut(s) 736
BanI GGYRCC 2 cut(s) 140, 682
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 472, 1379
BbvI GCAGC 4 cut(s) 579, 775, 1190, 1303
BccI CCATC 2 cut(s) 175, 1145
BciT130I CCWGG 2 cut(s) 337, 1233
BciVI GTATCC 2 cut(s) 657, 898
BcnI CCSGG 3 cut(s) 269, 622, 1203
BcoDI GTCTC 4 cut(s) 221, 630, 962, 1023
BfaI CTAG 1 cut(s) 473
BfuI GTATCC 2 cut(s) 657, 898
BisI GCNGC 6 cut(s) 330, 522, 593, 789, 1179, 1317
BlsI GCNGC 6 cut(s) 331, 523, 594, 790, 1180, 1318
Bme1390I CCNGG 5 cut(s) 269, 337, 622, 1203, 1233
Bme18I GGWCC 2 cut(s) 312, 1199
BmeT110I CYCGRG 1 cut(s) 976
BmgT120I GGNCC 2 cut(s) 312, 1199
BmiI GGNNCC 5 cut(s) 142, 313, 684, 738, 879
BmrFI CCNGG 5 cut(s) 269, 337, 622, 1203, 1233
BmsI GCATC 6 cut(s) 214, 763, 775, 859, 970, 1150
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 873
Bpu14I TTCGAA 2 cut(s) 152, 917
BpuEI CTTGAG 1 cut(s) 598
BpuMI CCSGG 3 cut(s) 269, 622, 1203
BsaHI GRCGYC 1 cut(s) 716
BsaI GGTCTC 3 cut(s) 630, 962, 1023
BsaJI CCNNGG 6 cut(s) 249, 336, 495, 1146, 1202, 1232
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 6 cut(s) 125, 267, 336, 382, 603, 1152
Bse118I RCCGGY 1 cut(s) 1024
Bse3DI GCAATG 2 cut(s) 387, 1140
BseBI CCWGG 2 cut(s) 337, 1233
BseDI CCNNGG 6 cut(s) 249, 336, 495, 1146, 1202, 1232
BseGI GGATG 8 cut(s) 48, 71, 167, 210, 406, 778, 961, 1156
BseLI CCNNNNNNNGG 6 cut(s) 125, 267, 336, 382, 603, 1152
BseMI GCAATG 2 cut(s) 387, 1140
BseMII CTCAG 3 cut(s) 569, 957, 1023
BseRI GAGGAG 2 cut(s) 149, 423
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 4 cut(s) 579, 775, 1190, 1303
BseYI CCCAGC 1 cut(s) 1319
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 5 cut(s) 254, 524, 560, 856, 1037
BshNI GGYRCC 2 cut(s) 140, 682
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 472, 1379
BsiHKCI CYCGRG 1 cut(s) 976
BsiSI CCGG 4 cut(s) 268, 621, 1025, 1202
BslFI GGGAC 3 cut(s) 442, 964, 1114
BslI CCNNNNNNNGG 6 cut(s) 125, 267, 336, 382, 603, 1152
BsmAI GTCTC 4 cut(s) 221, 630, 962, 1023
BsmBI CGTCTC 1 cut(s) 221
BsmFI GGGAC 3 cut(s) 442, 964, 1114
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 5 cut(s) 254, 524, 560, 856, 1037
Bso31I GGTCTC 3 cut(s) 630, 962, 1023
BsoBI CYCGRG 1 cut(s) 976
Bsp119I TTCGAA 2 cut(s) 152, 917
Bsp1286I GDGCHC 3 cut(s) 423, 472, 1379
Bsp143I GATC 3 cut(s) 264, 736, 940
Bsp19I CCATGG 1 cut(s) 1146
BspACI CCGC 8 cut(s) 92, 327, 330, 392, 521, 902, 1022, 1207
BspANI GGCC 5 cut(s) 254, 524, 560, 856, 1037
BspCNI CTCAG 3 cut(s) 568, 958, 1024
BspLI GGNNCC 5 cut(s) 142, 313, 684, 738, 879
BspPI GGATC 3 cut(s) 259, 731, 744
BspT104I TTCGAA 2 cut(s) 152, 917
BspT107I GGYRCC 2 cut(s) 140, 682
BspTNI GGTCTC 3 cut(s) 630, 962, 1023
BsrDI GCAATG 2 cut(s) 387, 1140
BsrFI RCCGGY 1 cut(s) 1024
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 6 cut(s) 249, 336, 495, 1146, 1202, 1232
BssMI GATC 3 cut(s) 264, 736, 940
BssNI GRCGYC 1 cut(s) 716
BssT1I CCWWGG 3 cut(s) 249, 495, 1146
Bst2UI CCWGG 2 cut(s) 337, 1233
Bst4CI ACNGT 2 cut(s) 418, 467
Bst6I CTCTTC 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 716
BstBI TTCGAA 2 cut(s) 152, 917
BstC8I GCNNGC 1 cut(s) 1176
BstDEI CTNAG 5 cut(s) 12, 555, 873, 966, 1032
BstDSI CCRYGG 1 cut(s) 1146
BstF5I GGATG 8 cut(s) 48, 71, 167, 210, 406, 778, 961, 1156
BstHHI GCGC 1 cut(s) 1070
BstKTI GATC 3 cut(s) 267, 739, 943
BstMAI GTCTC 4 cut(s) 221, 630, 962, 1023
BstMBI GATC 3 cut(s) 264, 736, 940
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 5 cut(s) 476, 598, 715, 1065, 1280
BstNI CCWGG 2 cut(s) 337, 1233
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 5 cut(s) 267, 335, 620, 1201, 1231
BstSLI GKGCMC 1 cut(s) 423
BstV1I GCAGC 4 cut(s) 579, 775, 1190, 1303
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 264, 736
BstXI CCANNNNNNTGG 1 cut(s) 730
BstYI RGATCY 2 cut(s) 264, 736
BsuI GTATCC 2 cut(s) 657, 898
BsuRI GGCC 5 cut(s) 254, 524, 560, 856, 1037
BtgI CCRYGG 1 cut(s) 1146
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 8 cut(s) 48, 71, 167, 210, 406, 778, 961, 1156
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 4 cut(s) 423, 472, 1077, 1359
Cac8I GCNNGC 1 cut(s) 1176
CfoI GCGC 1 cut(s) 1070
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 2 cut(s) 312, 1199
CseI GACGC 1 cut(s) 724
Csp6I GTAC 1 cut(s) 284
CviAII CATG 4 cut(s) 932, 1085, 1147, 1271
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 5 cut(s) 12, 555, 873, 966, 1032
DpnI GATC 3 cut(s) 266, 738, 942
DpnII GATC 3 cut(s) 264, 736, 940
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
EciI GGCGGA 1 cut(s) 1011
Eco130I CCWWGG 3 cut(s) 249, 495, 1146
Eco147I AGGCCT 1 cut(s) 560
Eco31I GGTCTC 3 cut(s) 630, 962, 1023
Eco47I GGWCC 2 cut(s) 312, 1199
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 976
EcoO109I RGGNCCY 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 335, 1231
EcoT14I CCWWGG 3 cut(s) 249, 495, 1146
ErhI CCWWGG 3 cut(s) 249, 495, 1146
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 4 cut(s) 935, 1088, 1150, 1274
FalI AAGNNNNNCTT 2 cut(s) 1258, 1290
FaqI GGGAC 3 cut(s) 442, 964, 1114
FatI CATG 4 cut(s) 931, 1084, 1146, 1270
Fnu4HI GCNGC 6 cut(s) 330, 522, 593, 789, 1179, 1317
FokI GGATG 8 cut(s) 35, 58, 154, 197, 413, 785, 948, 1163
Fsp4HI GCNGC 6 cut(s) 330, 522, 593, 789, 1179, 1317
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 1069
GluI GCNGC 6 cut(s) 330, 522, 593, 789, 1179, 1317
GsaI CCCAGC 1 cut(s) 1323
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 5 cut(s) 254, 524, 560, 856, 1037
HapII CCGG 4 cut(s) 268, 621, 1025, 1202
HgaI GACGC 1 cut(s) 724
HhaI GCGC 1 cut(s) 1070
Hin1I GRCGYC 1 cut(s) 716
Hin1II CATG 4 cut(s) 935, 1088, 1150, 1274
Hin6I GCGC 1 cut(s) 1068
HinP1I GCGC 1 cut(s) 1068
HinfI GANTC 6 cut(s) 154, 455, 511, 640, 952, 1225
HpaII CCGG 4 cut(s) 268, 621, 1025, 1202
HphI GGTGA 2 cut(s) 196, 403
Hpy166II GTNNAC 2 cut(s) 133, 1199
Hpy188I TCNGA 4 cut(s) 172, 516, 573, 1033
Hpy188III TCNNGA 7 cut(s) 101, 196, 502, 536, 615, 689, 965
Hpy8I GTNNAC 2 cut(s) 133, 1199
Hpy99I CGWCG 3 cut(s) 149, 356, 359
HpyAV CCTTC 3 cut(s) 561, 571, 867
HpyCH4III ACNGT 2 cut(s) 418, 467
HpyCH4IV ACGT 2 cut(s) 147, 351
HpyCH4V TGCA 8 cut(s) 449, 667, 961, 1140, 1163, 1174, 1218, 1388
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 598, 715, 1065, 1280
HpyF3I CTNAG 5 cut(s) 12, 555, 873, 966, 1032
HpySE526I ACGT 2 cut(s) 147, 351
Hsp92I GRCGYC 1 cut(s) 716
Hsp92II CATG 4 cut(s) 935, 1088, 1150, 1274
HspAI GCGC 1 cut(s) 1068
Kzo9I GATC 3 cut(s) 264, 736, 940
LmnI GCTCC 3 cut(s) 21, 436, 877
Lsp1109I GCAGC 4 cut(s) 579, 775, 1190, 1303
LweI GCATC 6 cut(s) 214, 763, 775, 859, 970, 1150
MaeI CTAG 1 cut(s) 473
MaeII ACGT 2 cut(s) 147, 351
MaeIII GTNAC 4 cut(s) 581, 817, 838, 1244
MalI GATC 3 cut(s) 266, 738, 942
MboI GATC 3 cut(s) 264, 736, 940
MboII GAAGA 6 cut(s) 31, 119, 417, 556, 817, 1019
MfeI CAATTG 3 cut(s) 306, 450, 1039
MflI RGATCY 2 cut(s) 264, 736
MhlI GDGCHC 3 cut(s) 423, 472, 1379
MlsI TGGCCA 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 3 cut(s) 464, 505, 946
MmeI TCCRAC 5 cut(s) 106, 195, 214, 342, 750
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 2 cut(s) 416, 1145
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 4 cut(s) 268, 621, 1025, 1202
MspR9I CCNGG 5 cut(s) 269, 337, 622, 1203, 1233
MunI CAATTG 3 cut(s) 306, 450, 1039
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 337, 1233
MwoI GCNNNNNNNGC 5 cut(s) 476, 598, 715, 1065, 1280
NciI CCSGG 3 cut(s) 269, 622, 1203
NcoI CCATGG 1 cut(s) 1146
NdeII GATC 3 cut(s) 264, 736, 940
NlaIII CATG 4 cut(s) 935, 1088, 1150, 1274
NlaIV GGNNCC 5 cut(s) 142, 313, 684, 738, 879
NmuCI GTSAC 2 cut(s) 581, 817
NspI RCATGY 1 cut(s) 935
NspV TTCGAA 2 cut(s) 152, 917
OliI CACNNNNGTG 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 976
PceI AGGCCT 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 154, 640, 1225
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 6 cut(s) 331, 523, 594, 790, 1180, 1318
PleI GAGTC 3 cut(s) 463, 505, 946
PpsI GAGTC 3 cut(s) 463, 505, 946
PpuMI RGGWCCY 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 335, 1231
PspFI CCCAGC 1 cut(s) 1319
PspGI CCWGG 2 cut(s) 335, 1231
PspN4I GGNNCC 5 cut(s) 142, 313, 684, 738, 879
PspPI GGNCC 2 cut(s) 312, 1199
PspPPI RGGWCCY 1 cut(s) 312
PspXI VCTCGAGB 1 cut(s) 976
PsuI RGATCY 2 cut(s) 264, 736
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 2 cut(s) 416, 1145
SaqAI TTAA 1 cut(s) 927
SatI GCNGC 6 cut(s) 330, 522, 593, 789, 1179, 1317
Sau3AI GATC 3 cut(s) 264, 736, 940
Sau96I GGNCC 2 cut(s) 312, 1199
SchI GAGTC 3 cut(s) 464, 505, 946
ScrFI CCNGG 5 cut(s) 269, 337, 622, 1203, 1233
SduI GDGCHC 3 cut(s) 423, 472, 1379
SfaNI GCATC 6 cut(s) 214, 763, 775, 859, 970, 1150
Sfr274I CTCGAG 1 cut(s) 976
SfuI TTCGAA 2 cut(s) 152, 917
SinI GGWCC 2 cut(s) 312, 1199
SlaI CTCGAG 1 cut(s) 976
SmiMI CAYNNNNRTG 2 cut(s) 416, 1145
SmlI CTYRAG 2 cut(s) 577, 976
SmoI CTYRAG 2 cut(s) 577, 976
SseBI AGGCCT 1 cut(s) 560
SsiI CCGC 8 cut(s) 92, 327, 330, 392, 521, 902, 1022, 1207
SspMI CTAG 1 cut(s) 473
StuI AGGCCT 1 cut(s) 560
StyD4I CCNGG 5 cut(s) 267, 335, 620, 1201, 1231
StyI CCWWGG 3 cut(s) 249, 495, 1146
TaaI ACNGT 2 cut(s) 418, 467
TaiI ACGT 2 cut(s) 150, 354
TaqI TCGA 9 cut(s) 152, 346, 509, 537, 614, 800, 917, 977, 1064
TaqII GACCGA 1 cut(s) 332
TauI GCSGC 2 cut(s) 332, 524
TfiI GAWTC 3 cut(s) 154, 640, 1225
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 4 cut(s) 423, 472, 1077, 1366
TseFI GTSAC 2 cut(s) 581, 817
TseI GCWGC 4 cut(s) 592, 788, 1178, 1316
Tsp45I GTSAC 2 cut(s) 581, 817
TspDTI ATGAA 6 cut(s) 417, 653, 743, 818, 1020, 1073
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 4 cut(s) 423, 472, 1077, 1366
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 312, 1199
XapI RAATTY 4 cut(s) 96, 484, 808, 919
XceI RCATGY 1 cut(s) 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XhoI CTCGAG 1 cut(s) 976
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.