Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013603.1

Orthogroup ID

OG0003730

Physical Location & Seq

Genomic Coordinates Forward (+)

108898 .. 109428

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013603.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggggagagaactctgtgtcactgaagttgaagtacagggggacaaacatcttgttgttgccactagccatcttgagagtccttgcccaggccctccaaaatgggatcagatgtacagcaaggaacgtgtagatcaggcaaaggaggccctcaacttcttaaagaagaacccaaatgtgattttttgcggtgacatgaactgggatgacaagttggatggccaagttcctttacctgacaactggattgatgcttgggtggagttacgaccaggggaagatggattgacgtatgataccaagtccaaccagatgttgtctggtaacaggtcactgcggaagcgactagatcgattcttttgctgtctgcacgatttcagggtgagcaaaattgaaatgattgggatgaaagcaataccaggtctctcatatatcaaggaaaagaaagtgaaaggggagattaagaagctggagctccctgttttacctagcgatcattatggcttgcttttgacaatctgtggccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0009987 GO:0016604 GO:0016605 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0070259 GO:0070260 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos zf-RanBP

Protein Analysis

176

Amino Acids

20.08

Weight (kDa)

6.43

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11800
fragaria_vesca	FvH4_3g01860 FvH4_3g01880 FvH4_3g01880 FvH4_3g01880
malus_domestica	MD05G1348300.v1.1 MD10G1323100.v1.1 MD10G1323300.v1.1
prunus_persica	Prupe.4G019000_v2.0.a1 Prupe.4G019000_v2.0.a1 Prupe.4G019100_v2.0.a1
pyrus_communis	pycom05g31580 pycom10g27350 pycom10g27360
rosa_chinensis	RchiOBHm_Chr5g0002731 RchiOBHm_Chr5g0002751
rosa_laevigata	RLG00000031055
rosa_multiflora	Rmu_sc0013603.1_g000021 Rmu_sc0022235.1_g000001 Rmu_sc0042337.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073150
rosa_rugosa	Rorug04G0398800 Rorug04G0398900 Rorug04G0399000
rosa_samantha	Rh5AG022000 Rh5AG022100 Rh5BG024900 Rh5BG025000 Rh5CG024300 Rh5CG024400 Rh5DG023300 Rh5DG023400
rosa_wichuraiana	Rw5G002050 Rw5G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	189, 337
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	220, 523
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	36, 116
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	32, 395
AjnI	CCWGG	3 cut(s)	88, 271, 418
AluBI	AGCT	2 cut(s)	469, 475
AluI	AGCT	2 cut(s)	469, 475
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	4 cut(s)	91, 147, 220, 523
AspS9I	GGNCC	2 cut(s)	92, 148
AsuHPI	GGTGA	2 cut(s)	203, 394
BalI	TGGCCA	2 cut(s)	222, 525
BanII	GRGCYC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
Bbv12I	GWGCWC	1 cut(s)	477
BccI	CCATC	3 cut(s)	78, 212, 275
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	3 cut(s)	90, 273, 420
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	3 cut(s)	66, 347, 489
Bme1390I	CCNGG	3 cut(s)	90, 273, 420
BmgT120I	GGNCC	2 cut(s)	92, 148
BmrFI	CCNGG	3 cut(s)	90, 273, 420
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	88, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	206, 248, 526
BseBI	CCWGG	3 cut(s)	90, 273, 420
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	88, 272
BseGI	GGATG	3 cut(s)	211, 223, 411
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseNI	ACTGG	3 cut(s)	206, 248, 526
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	4 cut(s)	93, 149, 222, 525
BshVI	ATCGAT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	4 cut(s)	93, 149, 222, 525
Bso31I	GGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	106, 133, 349, 493
BspACI	CCGC	2 cut(s)	189, 337
BspANI	GGCC	4 cut(s)	93, 149, 222, 525
BspDI	ATCGAT	1 cut(s)	352
BspPI	GGATC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	3 cut(s)	206, 248, 526
BssECI	CCNNGG	2 cut(s)	88, 272
BssMI	GATC	4 cut(s)	106, 133, 349, 493
Bst2UI	CCWGG	3 cut(s)	90, 273, 420
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	506
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	211, 223, 411
BstKTI	GATC	4 cut(s)	109, 136, 352, 496
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	4 cut(s)	106, 133, 349, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	3 cut(s)	90, 273, 420
BstSCI	CCNGG	3 cut(s)	88, 271, 418
Bsu15I	ATCGAT	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	93, 149, 222, 525
BsuTUI	ATCGAT	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	211, 223, 411
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	21, 332
Cac8I	GCNNGC	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	92, 148
ClaI	ATCGAT	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	35, 115
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	8 cut(s)	69, 93, 149, 222, 469, 475, 504, 525
CviKI_1	RGCY	8 cut(s)	69, 93, 149, 222, 469, 475, 504, 525
CviQI	GTAC	2 cut(s)	35, 115
DpnI	GATC	4 cut(s)	108, 135, 351, 495
DpnII	GATC	4 cut(s)	106, 133, 349, 493
EaeI	YGGCCR	2 cut(s)	220, 523
Ecl136II	GAGCTC	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	475
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	2 cut(s)	92, 148
EcoRII	CCWGG	3 cut(s)	88, 271, 418
EcoT38I	GRGCYC	1 cut(s)	477
FaeI	CATG	1 cut(s)	199
FaiI	YATR	5 cut(s)	197, 294, 430, 432, 501
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	195
FokI	GGATG	3 cut(s)	218, 230, 418
FriOI	GRGCYC	1 cut(s)	477
FspBI	CTAG	3 cut(s)	66, 347, 489
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	4 cut(s)	93, 149, 222, 525
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	2 cut(s)	79, 354
HphI	GGTGA	2 cut(s)	203, 394
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	127, 290
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpySE526I	ACGT	2 cut(s)	127, 290
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	106, 133, 349, 493
LmnI	GCTCC	2 cut(s)	472, 480
LweI	GCATC	1 cut(s)	241
MabI	ACCWGGT	1 cut(s)	418
MaeI	CTAG	3 cut(s)	66, 347, 489
MaeII	ACGT	2 cut(s)	127, 290
MaeIII	GTNAC	5 cut(s)	19, 191, 264, 323, 330
MalI	GATC	4 cut(s)	108, 135, 351, 495
MboI	GATC	4 cut(s)	106, 133, 349, 493
MboII	GAAGA	2 cut(s)	178, 290
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	2 cut(s)	222, 525
MluCI	AATT	1 cut(s)	390
MluNI	TGGCCA	2 cut(s)	222, 525
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	195, 330
MnlI	CCTC	3 cut(s)	105, 139, 161
Mox20I	TGGCCA	2 cut(s)	222, 525
MscI	TGGCCA	2 cut(s)	222, 525
MseI	TTAA	2 cut(s)	161, 462
Msp20I	TGGCCA	2 cut(s)	222, 525
MspR9I	CCNGG	3 cut(s)	90, 273, 420
MvaI	CCWGG	3 cut(s)	90, 273, 420
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	4 cut(s)	106, 133, 349, 493
NlaIII	CATG	1 cut(s)	199
NmuCI	GTSAC	3 cut(s)	19, 191, 330
PfeI	GAWTC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	477
Psp6I	CCWGG	3 cut(s)	88, 271, 418
PspGI	CCWGG	3 cut(s)	88, 271, 418
PspPI	GGNCC	2 cut(s)	92, 148
RsaI	GTAC	2 cut(s)	36, 116
RsaNI	GTAC	2 cut(s)	35, 115
SacI	GAGCTC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	161, 462
Sau3AI	GATC	4 cut(s)	106, 133, 349, 493
Sau96I	GGNCC	2 cut(s)	92, 148
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	90, 273, 420
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	8 cut(s)	130, 238, 293, 332, 424, 471, 477, 490
SexAI	ACCWGGT	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	2 cut(s)	189, 337
SspMI	CTAG	3 cut(s)	66, 347, 489
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	3 cut(s)	88, 271, 418
TaiI	ACGT	2 cut(s)	130, 293
TaqI	TCGA	1 cut(s)	352
TasI	AATT	1 cut(s)	390
TatI	WGTACW	2 cut(s)	34, 114
TfiI	GAWTC	1 cut(s)	354
Tru1I	TTAA	2 cut(s)	161, 462
Tru9I	TTAA	2 cut(s)	161, 462
TscAI	CASTG	2 cut(s)	28, 339
TseFI	GTSAC	3 cut(s)	19, 191, 330
Tsp45I	GTSAC	3 cut(s)	19, 191, 330
TspDTI	ATGAA	2 cut(s)	212, 422
TspRI	CASTG	2 cut(s)	28, 339
XagI	CCTNNNNNAGG	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	3 cut(s)	66, 347, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.