Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042337.1

Orthogroup ID

OG0003730

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 991

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042337.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ccgaaacgtcgtcgcttactacccacaaaccctaatcacgggcattgcggttggggatgaagtcctcaccacagtgccctcctcagctcctctgcttgttcctgcaattgagtccctttacagtgctctagtggccgcaaatttacacaccaaggtcaagatttcgactcccaatgccgcctctattattcttgaccctttccctccttctcaggccttcttcaaccagagcttgagtgacattgtgctgcctttgcttcggttcttgtcgagaaccgggtctcccttgatgatgaatctgtacccttactatgtgtttatgcagaacaaaggtgtggtgcctttggataatgccctgttcaagcctttgacgccctccaaagaaatggttgatcccaacactctgcttcattatacgaatgtgttggatgctatgattgatgctgcttatttttcgatgaagaatttgaatgtgactgatgttatggtgcttgttaccgagagtggttggccttcaaaagctgatgctaaggagccttatgctactattgacaatgccgacacttacaattcgaatttgattaagcatgtttttgatcgtagtgggactcctttgcatcctgagaccacctcaagtgtgttcctttatgagttgttcaatgaagatttgaggtctccgccggtttctgaggccaattggggcttgttttatggcaattccagcgctgtgtatttgcttcatgtttcggggagtgggacttttttggctaatgatacaacaaaccagacattttgcattgccatggatggggttgatgcaaagactttgcaagcagctctggattgggcttgtggaccggggcggtctaattgcacagagattcagccaggggagagttgttactctcctaacaatgtgaagagccatgcttcttatgcttttgatagctattaccagaagcaaggaaaggctgctgggtcttgtgattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

329

Amino Acids

35.84

Weight (kDa)

4.91

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11800
fragaria_vesca	FvH4_3g01860 FvH4_3g01880 FvH4_3g01880 FvH4_3g01880
malus_domestica	MD05G1348300.v1.1 MD10G1323100.v1.1 MD10G1323300.v1.1
prunus_persica	Prupe.4G019000_v2.0.a1 Prupe.4G019000_v2.0.a1 Prupe.4G019100_v2.0.a1
pyrus_communis	pycom05g31580 pycom10g27350 pycom10g27360
rosa_chinensis	RchiOBHm_Chr5g0002731 RchiOBHm_Chr5g0002751
rosa_laevigata	RLG00000031055
rosa_multiflora	Rmu_sc0013603.1_g000021 Rmu_sc0022235.1_g000001 Rmu_sc0042337.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073150
rosa_rugosa	Rorug04G0398800 Rorug04G0398900 Rorug04G0399000
rosa_samantha	Rh5AG022000 Rh5AG022100 Rh5BG024900 Rh5BG025000 Rh5CG024300 Rh5CG024400 Rh5DG023300 Rh5DG023400
rosa_wichuraiana	Rw5G002050 Rw5G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AciI	CCGC	5 cut(s)	48, 136, 178, 678, 863
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	3 cut(s)	140, 464, 575
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	303
AfeI	AGCGCT	1 cut(s)	725
AfiI	CCNNNNNNNGG	2 cut(s)	38, 808
AgsI	TTSAA	5 cut(s)	224, 362, 470, 517, 659
AjnI	CCWGG	1 cut(s)	887
AleI	CACNNNNGTG	1 cut(s)	72
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	5 cut(s)	87, 232, 522, 837, 949
AluI	AGCT	5 cut(s)	87, 232, 522, 837, 949
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	286, 618, 679
AlwI	GGATC	1 cut(s)	387
Aor51HI	AGCGCT	1 cut(s)	725
AoxI	GGCC	4 cut(s)	133, 214, 510, 691
ApeKI	GCWGC	4 cut(s)	248, 444, 834, 972
ApoI	RAATTY	3 cut(s)	140, 464, 575
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	855
AsuC2I	CCSGG	2 cut(s)	278, 859
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	855
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	235, 431, 846, 959
BccI	CCATC	1 cut(s)	801
BciT130I	CCWGG	1 cut(s)	889
BcnI	CCSGG	2 cut(s)	278, 859
BcoDI	GTCTC	3 cut(s)	286, 618, 679
BfaI	CTAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	727
BisI	GCNGC	6 cut(s)	136, 178, 249, 445, 835, 973
BlsI	GCNGC	6 cut(s)	137, 179, 250, 446, 836, 974
Bme1390I	CCNGG	3 cut(s)	278, 859, 889
Bme18I	GGWCC	1 cut(s)	855
BmgT120I	GGNCC	1 cut(s)	855
BmiI	GGNNCC	2 cut(s)	340, 535
BmrFI	CCNGG	3 cut(s)	278, 859, 889
BmsI	GCATC	5 cut(s)	419, 431, 515, 626, 806
BplI	GAGNNNNNCTC	2 cut(s)	615, 647
Bpu10I	CCTNAGC	2 cut(s)	83, 529
Bpu14I	TTCGAA	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	254, 617
BpuMI	CCSGG	2 cut(s)	278, 859
BsaHI	GRCGYC	1 cut(s)	372
BsaI	GGTCTC	3 cut(s)	286, 618, 679
BsaJI	CCNNGG	4 cut(s)	151, 802, 858, 888
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 808
Bse118I	RCCGGY	1 cut(s)	680
Bse3DI	GCAATG	2 cut(s)	43, 796
BseBI	CCWGG	1 cut(s)	889
BseDI	CCNNGG	4 cut(s)	151, 802, 858, 888
BseGI	GGATG	4 cut(s)	62, 434, 617, 812
BseLI	CCNNNNNNNGG	2 cut(s)	38, 808
BseMI	GCAATG	2 cut(s)	43, 796
BseMII	CTCAG	4 cut(s)	97, 225, 613, 679
BseRI	GAGGAG	2 cut(s)	71, 79
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	4 cut(s)	235, 431, 846, 959
BseYI	CCCAGC	1 cut(s)	975
BshFI	GGCC	4 cut(s)	135, 216, 512, 693
BshNI	GGYRCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	277, 681, 858
BslFI	GGGAC	3 cut(s)	98, 620, 770
BslI	CCNNNNNNNGG	2 cut(s)	38, 808
BsmAI	GTCTC	3 cut(s)	286, 618, 679
BsmFI	GGGAC	3 cut(s)	98, 620, 770
BsnI	GGCC	4 cut(s)	135, 216, 512, 693
Bso31I	GGTCTC	3 cut(s)	286, 618, 679
Bsp119I	TTCGAA	1 cut(s)	573
Bsp1286I	GDGCHC	2 cut(s)	79, 128
Bsp143I	GATC	2 cut(s)	392, 596
Bsp19I	CCATGG	1 cut(s)	802
BspACI	CCGC	5 cut(s)	48, 136, 178, 678, 863
BspANI	GGCC	4 cut(s)	135, 216, 512, 693
BspCNI	CTCAG	4 cut(s)	96, 224, 614, 680
BspLI	GGNNCC	2 cut(s)	340, 535
BspPI	GGATC	1 cut(s)	387
BspQI	GCTCTTC	1 cut(s)	915
BspT104I	TTCGAA	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	3 cut(s)	286, 618, 679
BsrDI	GCAATG	2 cut(s)	43, 796
BsrFI	RCCGGY	1 cut(s)	680
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	4 cut(s)	151, 802, 858, 888
BssMI	GATC	2 cut(s)	392, 596
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	151, 802
Bst2UI	CCWGG	1 cut(s)	889
Bst4CI	ACNGT	2 cut(s)	74, 123
Bst6I	CTCTTC	1 cut(s)	915
BstACI	GRCGYC	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	832
BstDEI	CTNAG	5 cut(s)	83, 211, 529, 622, 688
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	4 cut(s)	62, 434, 617, 812
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	2 cut(s)	395, 599
BstMAI	GTCTC	3 cut(s)	286, 618, 679
BstMBI	GATC	2 cut(s)	392, 596
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 254, 371, 721, 936
BstNI	CCWGG	1 cut(s)	889
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	3 cut(s)	276, 857, 887
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	235, 431, 846, 959
BstXI	CCANNNNNNTGG	1 cut(s)	386
BsuRI	GGCC	4 cut(s)	135, 216, 512, 693
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	4 cut(s)	62, 434, 617, 812
BtsIMutI	CAGTG	2 cut(s)	79, 128
Cac8I	GCNNGC	1 cut(s)	832
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	855
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	4 cut(s)	588, 741, 803, 927
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	5 cut(s)	83, 211, 529, 622, 688
DpnI	GATC	2 cut(s)	394, 598
DpnII	GATC	2 cut(s)	392, 596
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
EciI	GGCGGA	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	151, 802
Eco147I	AGGCCT	1 cut(s)	216
Eco31I	GGTCTC	3 cut(s)	286, 618, 679
Eco47I	GGWCC	1 cut(s)	855
Eco47III	AGCGCT	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	887
EcoT14I	CCWWGG	2 cut(s)	151, 802
ErhI	CCWWGG	2 cut(s)	151, 802
FaeI	CATG	4 cut(s)	591, 744, 806, 930
FaqI	GGGAC	3 cut(s)	98, 620, 770
FatI	CATG	4 cut(s)	587, 740, 802, 926
Fnu4HI	GCNGC	6 cut(s)	136, 178, 249, 445, 835, 973
FokI	GGATG	4 cut(s)	69, 441, 604, 819
Fsp4HI	GCNGC	6 cut(s)	136, 178, 249, 445, 835, 973
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	6 cut(s)	136, 178, 249, 445, 835, 973
GsaI	CCCAGC	1 cut(s)	979
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	4 cut(s)	135, 216, 512, 693
HapII	CCGG	3 cut(s)	277, 681, 858
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	726
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	4 cut(s)	591, 744, 806, 930
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	5 cut(s)	111, 167, 296, 608, 881
HpaII	CCGG	3 cut(s)	277, 681, 858
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	855
Hpy188I	TCNGA	1 cut(s)	689
Hpy188III	TCNNGA	5 cut(s)	158, 192, 271, 621, 840
Hpy8I	GTNNAC	1 cut(s)	855
Hpy99I	CGWCG	2 cut(s)	12, 15
HpyAV	CCTTC	3 cut(s)	217, 227, 523
HpyCH4III	ACNGT	2 cut(s)	74, 123
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	7 cut(s)	105, 323, 617, 796, 819, 830, 874
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 254, 371, 721, 936
HpyF3I	CTNAG	5 cut(s)	83, 211, 529, 622, 688
HpySE526I	ACGT	1 cut(s)	7
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	591, 744, 806, 930
HspAI	GCGC	1 cut(s)	724
Kzo9I	GATC	2 cut(s)	392, 596
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	2 cut(s)	92, 533
Lsp1109I	GCAGC	4 cut(s)	235, 431, 846, 959
LweI	GCATC	5 cut(s)	419, 431, 515, 626, 806
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	4 cut(s)	237, 473, 494, 900
MalI	GATC	2 cut(s)	394, 598
MboI	GATC	2 cut(s)	392, 596
MboII	GAAGA	4 cut(s)	212, 473, 675, 932
MfeI	CAATTG	2 cut(s)	106, 695
MhlI	GDGCHC	2 cut(s)	79, 128
MluCI	AATT	8 cut(s)	106, 140, 464, 569, 575, 695, 716, 869
MlyI	GAGTC	3 cut(s)	120, 161, 602
MmeI	TCCRAC	1 cut(s)	406
MseI	TTAA	1 cut(s)	583
MslI	CAYNNNNRTG	2 cut(s)	72, 801
MspI	CCGG	3 cut(s)	277, 681, 858
MspR9I	CCNGG	3 cut(s)	278, 859, 889
MunI	CAATTG	2 cut(s)	106, 695
MvaI	CCWGG	1 cut(s)	889
MwoI	GCNNNNNNNGC	5 cut(s)	132, 254, 371, 721, 936
NciI	CCSGG	2 cut(s)	278, 859
NcoI	CCATGG	1 cut(s)	802
NdeII	GATC	2 cut(s)	392, 596
NlaIII	CATG	4 cut(s)	591, 744, 806, 930
NlaIV	GGNNCC	2 cut(s)	340, 535
NmuCI	GTSAC	2 cut(s)	237, 473
NspI	RCATGY	1 cut(s)	591
NspV	TTCGAA	1 cut(s)	573
OliI	CACNNNNGTG	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	296, 881
PkrI	GCNGC	6 cut(s)	137, 179, 250, 446, 836, 974
PleI	GAGTC	3 cut(s)	119, 161, 602
PpsI	GAGTC	3 cut(s)	119, 161, 602
Psp6I	CCWGG	1 cut(s)	887
PspFI	CCCAGC	1 cut(s)	975
PspGI	CCWGG	1 cut(s)	887
PspN4I	GGNNCC	2 cut(s)	340, 535
PspPI	GGNCC	1 cut(s)	855
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	72, 801
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	583
SatI	GCNGC	6 cut(s)	136, 178, 249, 445, 835, 973
Sau3AI	GATC	2 cut(s)	392, 596
Sau96I	GGNCC	1 cut(s)	855
SchI	GAGTC	3 cut(s)	120, 161, 602
ScrFI	CCNGG	3 cut(s)	278, 859, 889
SduI	GDGCHC	2 cut(s)	79, 128
SfaNI	GCATC	5 cut(s)	419, 431, 515, 626, 806
SfuI	TTCGAA	1 cut(s)	573
SinI	GGWCC	1 cut(s)	855
SmiMI	CAYNNNNRTG	2 cut(s)	72, 801
SmlI	CTYRAG	2 cut(s)	233, 632
SmoI	CTYRAG	2 cut(s)	233, 632
Sse9I	AATT	8 cut(s)	106, 140, 464, 569, 575, 695, 716, 869
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	5 cut(s)	48, 136, 178, 678, 863
SspMI	CTAG	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	276, 857, 887
StyI	CCWWGG	2 cut(s)	151, 802
TaaI	ACNGT	2 cut(s)	74, 123
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	165, 270, 456, 573
TasI	AATT	8 cut(s)	106, 140, 464, 569, 575, 695, 716, 869
TauI	GCSGC	2 cut(s)	138, 180
TfiI	GAWTC	2 cut(s)	296, 881
Tru1I	TTAA	1 cut(s)	583
Tru9I	TTAA	1 cut(s)	583
TscAI	CASTG	2 cut(s)	79, 128
TseFI	GTSAC	2 cut(s)	237, 473
TseI	GCWGC	4 cut(s)	248, 444, 834, 972
Tsp45I	GTSAC	2 cut(s)	237, 473
TspDTI	ATGAA	6 cut(s)	73, 309, 399, 474, 676, 729
TspRI	CASTG	2 cut(s)	79, 128
VpaK11BI	GGWCC	1 cut(s)	855
XapI	RAATTY	3 cut(s)	140, 464, 575
XceI	RCATGY	1 cut(s)	591
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.