Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Forward (+)

4773434 .. 4774935

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCCGACGAGGAGCATCACTTTGAGTCCAGTGACGCCGGAGCGTCCAAAACCTACCCTCAACAAGCTGGAACCATCCGTAAGAATGGTTACATCGTCATCAAAAATCGTCCCTGCAAGGTTGTTGAGGTTTCAACCTCGAAGACTGGCAAGCATGGTCATGCTAAATGTCATTTTGTAGCTATTGATATCTTCACCAGCAAGAAACTCGAAGATATTGTTCCTTCTTCCCACAATTGTGATGTTCCTCATGTCAACCGTACTGATTATCAGCTGATTGACATTTCTGAAGATGGATATGTCAGTTTGTTGACTGATAACGGTAGTACCAAGGATGACCTTAAGCTCCCTAATGATGACACTCTGCTCCAACAGATCAAGAGTGGGTTTGATGATGGAAAAGATCTAGTGGTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATCAATGCTCTTAAGGACATCGGTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008135 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009888 GO:0009987 GO:0010035 GO:0010038 GO:0010087 GO:0010089 GO:0010467 GO:0012501 GO:0019538 GO:0032502 GO:0034050 GO:0034641 GO:0034645 GO:0042221 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0046686 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0097159 GO:0098542 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

158

Amino Acids

17.36

Weight (kDa)

5.41

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF5A-like_N	PF21485	16 - 78	2.4e-37	Translation initiation factor 5A-like, N-terminal
eIF-5a	PF01287	84 - 153	2.1e-29	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	262, 328
AflII	CTTAAG	2 cut(s)	341, 455
AgsI	TTSAA	1 cut(s)	135
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	68, 182, 274, 346, 428
AluI	AGCT	5 cut(s)	68, 182, 274, 346, 428
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	187, 424
AvaII	GGWCC	1 cut(s)	467
BaeI	ACNNNNGTAYC	2 cut(s)	310, 343
BbsI	GAAGAC	1 cut(s)	149
BccI	CCATC	3 cut(s)	83, 287, 389
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BfaI	CTAG	1 cut(s)	407
BfrI	CTTAAG	2 cut(s)	341, 455
BglII	AGATCT	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	73, 469
BmsI	GCATC	1 cut(s)	25
BoxI	GACNNNNGTC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	330
Bse1I	ACTGG	2 cut(s)	30, 151
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	75, 340
BseNI	ACTGG	2 cut(s)	30, 151
BseRI	GAGGAG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	96, 453
BsmFI	GGGAC	2 cut(s)	96, 453
Bsp143I	GATC	3 cut(s)	375, 403, 444
BspLI	GGNNCC	2 cut(s)	73, 469
BspTI	CTTAAG	2 cut(s)	341, 455
BsrI	ACTGG	2 cut(s)	30, 151
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	3 cut(s)	375, 403, 444
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	260, 323
BstACI	GRCGYC	1 cut(s)	36
BstAFI	CTTAAG	2 cut(s)	341, 455
BstC8I	GCNNGC	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	75, 340
BstKTI	GATC	3 cut(s)	378, 406, 447
BstMBI	GATC	3 cut(s)	375, 403, 444
BstPAI	GACNNNNGTC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	75, 340
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	467
CseI	GACGC	2 cut(s)	33, 44
Csp6I	GTAC	2 cut(s)	261, 327
CviAII	CATG	3 cut(s)	155, 161, 251
CviJI	RGCY	5 cut(s)	68, 182, 274, 346, 428
CviKI_1	RGCY	5 cut(s)	68, 182, 274, 346, 428
CviQI	GTAC	2 cut(s)	261, 327
DpnI	GATC	3 cut(s)	377, 405, 446
DpnII	GATC	3 cut(s)	375, 403, 444
Eco130I	CCWWGG	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	158, 164, 254
FaiI	YATR	5 cut(s)	156, 162, 252, 300, 431
FaqI	GGGAC	2 cut(s)	96, 453
FatI	CATG	3 cut(s)	154, 160, 250
FokI	GGATG	2 cut(s)	62, 347
FspBI	CTAG	1 cut(s)	407
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	2 cut(s)	33, 44
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	158, 164, 254
HincII	GTYRAC	2 cut(s)	256, 312
HindII	GTYRAC	2 cut(s)	256, 312
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	187, 424
Hpy166II	GTNNAC	2 cut(s)	256, 312
Hpy188I	TCNGA	2 cut(s)	7, 289
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	256, 312
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	260, 323
HpyCH4V	TGCA	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	158, 164, 254
Kzo9I	GATC	3 cut(s)	375, 403, 444
LmnI	GCTCC	4 cut(s)	13, 41, 351, 372
LpnPI	CCDG	6 cut(s)	43, 52, 54, 127, 132, 211
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	32, 89
MalI	GATC	3 cut(s)	377, 405, 446
MboI	GATC	3 cut(s)	375, 403, 444
MboII	GAAGA	5 cut(s)	154, 184, 219, 224, 302
MfeI	CAATTG	1 cut(s)	235
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	1 cut(s)	235
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	30, 394
MnlI	CCTC	6 cut(s)	4, 69, 121, 148, 258, 430
MseI	TTAA	2 cut(s)	342, 456
MslI	CAYNNNNRTG	2 cut(s)	159, 237
MspA1I	CMGCKG	1 cut(s)	274
MspCI	CTTAAG	2 cut(s)	341, 455
MspI	CCGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	235
NdeII	GATC	3 cut(s)	375, 403, 444
NlaIII	CATG	3 cut(s)	158, 164, 254
NlaIV	GGNNCC	2 cut(s)	73, 469
NmuCI	GTSAC	1 cut(s)	32
OliI	CACNNNNGTG	1 cut(s)	237
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PshAI	GACNNNNGTC	1 cut(s)	465
PspN4I	GGNNCC	2 cut(s)	73, 469
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	262, 328
RsaNI	GTAC	2 cut(s)	261, 327
RseI	CAYNNNNRTG	2 cut(s)	159, 237
SaqAI	TTAA	2 cut(s)	342, 456
Sau3AI	GATC	3 cut(s)	375, 403, 444
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	2 cut(s)	159, 237
SmlI	CTYRAG	2 cut(s)	341, 455
SmoI	CTYRAG	2 cut(s)	341, 455
Sse9I	AATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	260, 323
TaqI	TCGA	2 cut(s)	140, 210
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	342, 456
Tru9I	TTAA	2 cut(s)	342, 456
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	37
Vha464I	CTTAAG	2 cut(s)	341, 455
VpaK11BI	GGWCC	1 cut(s)	467
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.