Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Reverse (-)

919679 .. 921667

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCTGACGAGGAGCACCAGTTCGAATCCAAGGCCGACGCCGGAGCTTCCAAGACCTACCCTCAGCAAGCCGGAACCATCCGTAAGAACGGCTACATCGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAAGTCTCCACTTCCAAGACAGGAAAGCACGGTCATGCTAAGTGCCACTTTGTTGCAATTGATATCTTCAATGGCAAGAAGCTTGAGGATATTGTCCCTTCATCCCACAATTGTGATGTTCCTCATGTGAACCGTACTGACTACCAGCTGATTGATATCTCTGAAGATGGCTTTGTGAGTCTCTTAACTGAAAATGGAAACACCAAGGATGATCTGAGGCTTCCCACTGATGATGCTCTGCTCACTCAGCAAAAGGAAGATATTTCTGTGTTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

136

Amino Acids

14.93

Weight (kDa)

5.62

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF5A-like_N	PF21485	17 - 79	2.4e-37	Translation initiation factor 5A-like, N-terminal
eIF-5a	PF01287	85 - 126	5.1e-15	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	131, 199
AleI	CACNNNNGTG	1 cut(s)	240
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	3 cut(s)	47, 211, 277
AluI	AGCT	3 cut(s)	47, 211, 277
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	139, 314
AoxI	GGCC	2 cut(s)	33, 113
AsuII	TTCGAA	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	63
BccI	CCATC	2 cut(s)	86, 290
BceAI	ACGGC	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	139, 314
BmiI	GGNNCC	1 cut(s)	76
BmsI	GCATC	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	30, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse1I	ACTGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	30, 333
BseGI	GGATG	3 cut(s)	78, 230, 343
BseJI	GATNNNNATC	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	77, 335, 389
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	35, 115
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	42, 72
BslFI	GGGAC	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	139, 314
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	35, 115
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	35, 115
BspCNI	CTCAG	3 cut(s)	76, 336, 388
BspLI	GGNNCC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	30, 333
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	30, 333
Bst4CI	ACNGT	2 cut(s)	161, 263
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	69, 113
BstDEI	CTNAG	4 cut(s)	63, 168, 344, 375
BstF5I	GGATG	3 cut(s)	78, 230, 343
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	139, 314
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 376
BsuRI	GGCC	2 cut(s)	35, 115
BtsCI	GGATG	3 cut(s)	78, 230, 343
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	69, 113
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	164, 254
CviJI	RGCY	9 cut(s)	35, 47, 71, 93, 115, 211, 277, 300, 349
CviKI_1	RGCY	9 cut(s)	35, 47, 71, 93, 115, 211, 277, 300, 349
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	4 cut(s)	63, 168, 344, 375
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	30, 333
Eco147I	AGGCCT	1 cut(s)	115
Eco32I	GATATC	2 cut(s)	193, 286
Eco57I	CTGAAG	1 cut(s)	312
EcoRV	GATATC	2 cut(s)	193, 286
EcoT14I	CCWWGG	2 cut(s)	30, 333
ErhI	CCWWGG	2 cut(s)	30, 333
FaeI	CATG	2 cut(s)	167, 257
FaiI	YATR	3 cut(s)	165, 255, 406
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	163, 253
FokI	GGATG	3 cut(s)	65, 217, 350
HaeIII	GGCC	2 cut(s)	35, 115
HapII	CCGG	2 cut(s)	42, 72
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	167, 257
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	26, 307
HpaII	CCGG	2 cut(s)	42, 72
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	7, 292, 345
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	2 cut(s)	161, 263
HpyCH4V	TGCA	2 cut(s)	120, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 376
HpyF3I	CTNAG	4 cut(s)	63, 168, 344, 375
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	167, 257
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	13, 44
LpnPI	CCDG	6 cut(s)	32, 55, 85, 97, 135, 287
LweI	GCATC	1 cut(s)	352
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	187, 305, 398
MfeI	CAATTG	2 cut(s)	186, 238
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	2 cut(s)	186, 238
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	5 cut(s)	4, 72, 208, 261, 339
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	2 cut(s)	162, 240
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	42, 72
MunI	CAATTG	2 cut(s)	186, 238
MwoI	GCNNNNNNNGC	2 cut(s)	117, 376
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	167, 257
NlaIV	GGNNCC	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	2 cut(s)	162, 240
SaqAI	TTAA	1 cut(s)	314
Sau3AI	GATC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	5 cut(s)	49, 59, 126, 213, 279
SfaNI	GCATC	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	162, 240
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	186, 238
SseBI	AGGCCT	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	30, 333
TaaI	ACNGT	2 cut(s)	161, 263
TaqI	TCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	186, 238
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	219, 393
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.