Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Forward (+)

48993477 .. 48994430

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0315100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGGAGCGATTACACCACCAAATCGGAAGGCCGGAGGCAGAGAAGGGGAGAGGATGGGATCTATCACCTCAAGGTTTCTCTTCAAGATCTCTACACTGGCACAACCAGAAAGCTTGCTGTCACTCGCAACAAGATCTGCACCAAGTGCAAGGGCAAAGGGTCAAAGTCAGGCGCTTCATGGACGTGCCGTGGTTGCCAAGGGCATGGTTATAAAGTCATTGTACGCCATTTAAGCCAAAATTTGACGCAGCGAACGCAGCAGTACTGCTATGAGTGCAAGGGCACTGGCCAGACCATCAGTGCAAAGGACCGCTGCCAGCAGTGCAAGGGTGACAAGGTTGTACTGGAGAAGAAAATATTGGAAGTCCATGTGGAGATAGGAATGAAAAACGGGCAGAAGATCATATTCCCTGGCGAAGCTCACGAAGCGCCTAATACCATCACAGGTAATATTGTTATTGTTGTCCAACAGAAGGAGCATCCCAAGTTTAAGCGAGAGGGGGATGACCTAATATTTAAGCATACATTGTCCCTAAAGGAGGCACTCTGTGGGTTCCAATTTAGGTTGACACATTTGGACGGTAGGCAGCTTCTGATTAAGTCTCAACCTGGAGAAGTTGTCAACCCTAATCGGTGCAAAGCTATACATGATGAAGGCATGCCAATCTACTCGAATCCATTTATTAAGGGCAAGTTGTATGTCCAGTTCACTGTTAAGTACCCAAATTCCTTGAACCCAGAACTGTGCAAGTCACCGCTTATTGATAAGGAGCTAGACGAATGCGATGAGACTACGCTGTATGATGTGAACATGGAGGACGAAATGAGAAAAAAGAAAGCAAAGCAGTCTCAAGAGGCATATGAGGAAGATGAGGACATGCATGGAAATGCCGGTGTCCAATGCGCTCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

305

Amino Acids

34.68

Weight (kDa)

8.9

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	22 - 242	6.9e-35	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	47 - 113	7.7e-13	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AciI	CCGC	2 cut(s)	313, 758
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	241, 727
AdeI	CACNNNGTG	2 cut(s)	147, 551
AfaI	GTAC	4 cut(s)	225, 266, 345, 722
AfiI	CCNNNNNNNGG	2 cut(s)	475, 541
AgsI	TTSAA	2 cut(s)	86, 736
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	2 cut(s)	412, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	5 cut(s)	115, 422, 592, 644, 775
AluI	AGCT	5 cut(s)	115, 422, 592, 644, 775
Alw26I	GTCTC	3 cut(s)	609, 785, 855
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	595
AoxI	GGCC	2 cut(s)	31, 289
ApeKI	GCWGC	4 cut(s)	250, 259, 315, 589
ApoI	RAATTY	2 cut(s)	241, 727
AspLEI	GCGC	3 cut(s)	176, 433, 908
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	3 cut(s)	59, 344, 747
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	262, 271, 302, 601
BccI	CCATC	3 cut(s)	50, 305, 449
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	2 cut(s)	414, 612
BcoDI	GTCTC	3 cut(s)	609, 785, 855
BfaI	CTAG	1 cut(s)	776
BfoI	RGCGCY	2 cut(s)	177, 434
BglII	AGATCT	2 cut(s)	88, 135
BisI	GCNGC	4 cut(s)	251, 260, 316, 590
BlsI	GCNGC	4 cut(s)	252, 261, 317, 591
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	414, 612
Bme18I	GGWCC	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	557
BmrFI	CCNGG	2 cut(s)	414, 612
BmsI	GCATC	1 cut(s)	490
BpmI	CTGGAG	2 cut(s)	368, 633
BpuEI	CTTGAG	2 cut(s)	56, 837
BsaJI	CCNNGG	3 cut(s)	190, 199, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 541
Bse118I	RCCGGY	1 cut(s)	893
Bse1I	ACTGG	4 cut(s)	103, 292, 351, 706
BseBI	CCWGG	2 cut(s)	414, 612
BseDI	CCNNGG	3 cut(s)	190, 199, 412
BseGI	GGATG	3 cut(s)	61, 481, 511
BseLI	CCNNNNNNNGG	2 cut(s)	475, 541
BseNI	ACTGG	4 cut(s)	103, 292, 351, 706
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	4 cut(s)	262, 271, 302, 601
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	33, 291
BsiSI	CCGG	2 cut(s)	34, 894
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	475, 541
BsmAI	GTCTC	3 cut(s)	609, 785, 855
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	2 cut(s)	33, 291
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	60, 88, 135, 402
BspACI	CCGC	2 cut(s)	313, 758
BspANI	GGCC	2 cut(s)	33, 291
BspLI	GGNNCC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	893
BsrI	ACTGG	4 cut(s)	103, 292, 351, 706
BssAI	RCCGGY	1 cut(s)	893
BssECI	CCNNGG	3 cut(s)	190, 199, 412
BssMI	GATC	4 cut(s)	60, 88, 135, 402
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	414, 612
Bst4CI	ACNGT	3 cut(s)	584, 715, 747
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	117, 320, 662
BstDSI	CCRYGG	1 cut(s)	190
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	3 cut(s)	61, 481, 511
BstH2I	RGCGCY	2 cut(s)	177, 434
BstHHI	GCGC	3 cut(s)	176, 433, 908
BstKTI	GATC	4 cut(s)	63, 91, 138, 405
BstMAI	GTCTC	3 cut(s)	609, 785, 855
BstMBI	GATC	4 cut(s)	60, 88, 135, 402
BstMWI	GCNNNNNNNGC	8 cut(s)	147, 195, 234, 256, 259, 276, 324, 428
BstNI	CCWGG	2 cut(s)	414, 612
BstNSI	RCATGY	2 cut(s)	664, 883
BstSCI	CCNGG	2 cut(s)	412, 610
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	262, 271, 302, 601
BstX2I	RGATCY	3 cut(s)	60, 88, 135
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	3 cut(s)	60, 88, 135
BsuRI	GGCC	2 cut(s)	33, 291
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	801
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	61, 481, 511
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	5 cut(s)	96, 285, 307, 329, 711
Cac8I	GCNNGC	3 cut(s)	117, 320, 662
CaiI	CAGNNNCTG	1 cut(s)	595
CfoI	GCGC	3 cut(s)	176, 433, 908
Cfr10I	RCCGGY	1 cut(s)	893
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	4 cut(s)	224, 265, 344, 721
CviAII	CATG	8 cut(s)	180, 206, 371, 650, 661, 814, 880, 884
CviJI	RGCY	8 cut(s)	33, 115, 237, 291, 422, 592, 644, 775
CviKI_1	RGCY	8 cut(s)	33, 115, 237, 291, 422, 592, 644, 775
CviQI	GTAC	4 cut(s)	224, 265, 344, 721
DpnI	GATC	4 cut(s)	62, 90, 137, 404
DpnII	GATC	4 cut(s)	60, 88, 135, 402
DraIII	CACNNNGTG	2 cut(s)	147, 551
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	310
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoRII	CCWGG	2 cut(s)	412, 610
EcoT14I	CCWWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	8 cut(s)	183, 209, 374, 653, 664, 817, 883, 887
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	8 cut(s)	179, 205, 370, 649, 660, 813, 879, 883
FauNDI	CATATG	1 cut(s)	862
Fnu4HI	GCNGC	4 cut(s)	251, 260, 316, 590
FokI	GGATG	3 cut(s)	68, 468, 518
Fsp4HI	GCNGC	4 cut(s)	251, 260, 316, 590
FspBI	CTAG	1 cut(s)	776
GlaI	GCGC	3 cut(s)	175, 432, 907
GluI	GCNGC	4 cut(s)	251, 260, 316, 590
GsuI	CTGGAG	2 cut(s)	368, 633
HaeII	RGCGCY	2 cut(s)	177, 434
HaeIII	GGCC	2 cut(s)	33, 291
HapII	CCGG	2 cut(s)	34, 894
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	3 cut(s)	176, 433, 908
Hin1II	CATG	8 cut(s)	183, 209, 374, 653, 664, 817, 883, 887
Hin6I	GCGC	3 cut(s)	174, 431, 906
HinP1I	GCGC	3 cut(s)	174, 431, 906
HincII	GTYRAC	2 cut(s)	570, 625
HindII	GTYRAC	2 cut(s)	570, 625
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	676
HpaII	CCGG	2 cut(s)	34, 894
HphI	GGTGA	3 cut(s)	59, 344, 747
Hpy166II	GTNNAC	4 cut(s)	570, 625, 711, 811
Hpy188I	TCNGA	2 cut(s)	28, 597
Hpy188III	TCNNGA	3 cut(s)	86, 425, 854
Hpy8I	GTNNAC	4 cut(s)	570, 625, 711, 811
HpyAV	CCTTC	4 cut(s)	23, 39, 469, 650
HpyCH4III	ACNGT	3 cut(s)	584, 715, 747
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	8 cut(s)	141, 150, 279, 305, 327, 639, 750, 883
HpyF10VI	GCNNNNNNNGC	8 cut(s)	147, 195, 234, 256, 259, 276, 324, 428
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	8 cut(s)	183, 209, 374, 653, 664, 817, 883, 887
HspAI	GCGC	3 cut(s)	174, 431, 906
Kzo9I	GATC	4 cut(s)	60, 88, 135, 402
LmnI	GCTCC	3 cut(s)	6, 478, 772
Lsp1109I	GCAGC	4 cut(s)	262, 271, 302, 601
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	776
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	3 cut(s)	121, 332, 753
MalI	GATC	4 cut(s)	62, 90, 137, 404
MboI	GATC	4 cut(s)	60, 88, 135, 402
MboII	GAAGA	4 cut(s)	74, 364, 412, 881
MflI	RGATCY	3 cut(s)	60, 88, 135
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	3 cut(s)	241, 560, 727
MluNI	TGGCCA	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	9 cut(s)	30, 46, 80, 493, 535, 811, 850, 859, 868
Mox20I	TGGCCA	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	885
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	6 cut(s)	233, 492, 519, 600, 687, 717
MslI	CAYNNNNRTG	2 cut(s)	184, 888
Msp20I	TGGCCA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	34, 894
MspR9I	CCNGG	2 cut(s)	414, 612
Mva1269I	GAATGC	1 cut(s)	788
MvaI	CCWGG	2 cut(s)	414, 612
MwoI	GCNNNNNNNGC	8 cut(s)	147, 195, 234, 256, 259, 276, 324, 428
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	4 cut(s)	60, 88, 135, 402
NlaIII	CATG	8 cut(s)	183, 209, 374, 653, 664, 817, 883, 887
NlaIV	GGNNCC	1 cut(s)	557
NmuCI	GTSAC	3 cut(s)	121, 332, 753
NsiI	ATGCAT	1 cut(s)	885
NspI	RCATGY	2 cut(s)	664, 883
PaeI	GCATGC	1 cut(s)	664
PctI	GAATGC	1 cut(s)	788
PfeI	GAWTC	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	252, 261, 317, 591
PsiI	TTATAA	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	412, 610
PspGI	CCWGG	2 cut(s)	412, 610
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	692, 724
PstNI	CAGNNNCTG	1 cut(s)	595
PsuI	RGATCY	3 cut(s)	60, 88, 135
RsaI	GTAC	4 cut(s)	225, 266, 345, 722
RsaNI	GTAC	4 cut(s)	224, 265, 344, 721
RseI	CAYNNNNRTG	2 cut(s)	184, 888
SaqAI	TTAA	6 cut(s)	233, 492, 519, 600, 687, 717
SatI	GCNGC	4 cut(s)	251, 260, 316, 590
Sau3AI	GATC	4 cut(s)	60, 88, 135, 402
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	414, 612
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	1 cut(s)	490
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	2 cut(s)	184, 888
SmlI	CTYRAG	2 cut(s)	71, 852
SmoI	CTYRAG	2 cut(s)	71, 852
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	3 cut(s)	241, 560, 727
SsiI	CCGC	2 cut(s)	313, 758
SspI	AATATT	3 cut(s)	360, 454, 516
SspMI	CTAG	1 cut(s)	776
StyD4I	CCNGG	2 cut(s)	412, 610
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	3 cut(s)	584, 715, 747
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	674
TasI	AATT	3 cut(s)	241, 560, 727
TatI	WGTACW	2 cut(s)	264, 343
TfiI	GAWTC	1 cut(s)	676
Tru1I	TTAA	6 cut(s)	233, 492, 519, 600, 687, 717
Tru9I	TTAA	6 cut(s)	233, 492, 519, 600, 687, 717
TscAI	CASTG	5 cut(s)	103, 292, 307, 329, 718
TseFI	GTSAC	3 cut(s)	121, 332, 753
TseI	GCWGC	4 cut(s)	250, 259, 315, 589
Tsp45I	GTSAC	3 cut(s)	121, 332, 753
TspDTI	ATGAA	3 cut(s)	168, 401, 669
TspRI	CASTG	5 cut(s)	103, 292, 307, 329, 718
VpaK11BI	GGWCC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	2 cut(s)	241, 727
XceI	RCATGY	2 cut(s)	664, 883
XspI	CTAG	1 cut(s)	776
ZrmI	AGTACT	1 cut(s)	266
Zsp2I	ATGCAT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.