Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Forward (+)

60185038 .. 60187524

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCCGACGAGGAGCACCACTTCGAATCTAAGGCCGACGCCGGAGCCTCCAAGACCTATCCTCAGCAGGCCGGCACCATCCGAAAGAACGGTTACATTGTCATCAAGAACAGGCCCTGCAAGGTTGTGGAGGTTTCCACTTCCAAAACTGGCAAGCACGGACATGCCAAGTGCCACTTTGTTGGTATTGATATCTTCACTGCCAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACAATTGTGATGTTCCCCATGTCAACCGTACCGACTACCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTGCTGACTGAGAATGGTAACACCAAGGATGACCTCAGGCTTCCAACCGATGATAATCTGCTTACGCAGGTTAGTTATTTTGAAATCTGGCCTTTTATACTCCAGCTTCCCCTGCTTTCTGTTGCTGCACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

147

Amino Acids

16.44

Weight (kDa)

5.94

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF5A-like_N	PF21485	17 - 79	1.4e-37	Translation initiation factor 5A-like, N-terminal
eIF-5a	PF01287	85 - 127	3.8e-15	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	392
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	211, 277, 415
AluI	AGCT	3 cut(s)	211, 277, 415
Alw21I	GWGCWC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	117
AoxI	GGCC	4 cut(s)	33, 69, 113, 398
ApeKI	GCWGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	114
AsuII	TTCGAA	1 cut(s)	24
AxyI	CCTNAGG	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	86, 290
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	46, 76
BpmI	CTGGAG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	233
BsaBI	GATNNNNATC	2 cut(s)	284, 363
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	344
Bse8I	GATNNNNATC	2 cut(s)	284, 363
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	78, 301, 343
BseJI	GATNNNNATC	2 cut(s)	284, 363
BseMII	CTCAG	4 cut(s)	77, 282, 309, 358
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	35, 71, 115, 400
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	42, 72
BsnI	GGCC	4 cut(s)	35, 71, 115, 400
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	18
BspANI	GGCC	4 cut(s)	35, 71, 115, 400
BspCNI	CTCAG	4 cut(s)	76, 283, 310, 357
BspLI	GGNNCC	2 cut(s)	46, 76
BspMI	ACCTGC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	92, 263
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	69, 73, 155
BstDEI	CTNAG	5 cut(s)	30, 63, 291, 318, 344
BstF5I	GGATG	3 cut(s)	78, 301, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	182
Bsu36I	CCTNAGG	1 cut(s)	344
BsuRI	GGCC	4 cut(s)	35, 71, 115, 400
BtsCI	GGATG	3 cut(s)	78, 301, 343
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	3 cut(s)	69, 73, 155
CaiI	CAGNNNCTG	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	164, 254
CviJI	RGCY	9 cut(s)	35, 47, 71, 115, 211, 277, 349, 400, 415
CviKI_1	RGCY	9 cut(s)	35, 47, 71, 115, 211, 277, 349, 400, 415
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	5 cut(s)	30, 63, 291, 318, 344
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	333
Eco32I	GATATC	2 cut(s)	193, 286
Eco81I	CCTNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRV	GATATC	2 cut(s)	193, 286
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	167, 257
FaiI	YATR	3 cut(s)	165, 255, 407
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	163, 253
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	3 cut(s)	65, 308, 350
Fsp4HI	GCNGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	4 cut(s)	35, 71, 115, 400
HapII	CCGG	2 cut(s)	42, 72
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	167, 257
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	26, 307
HpaII	CCGG	2 cut(s)	42, 72
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	7, 83, 292
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	2 cut(s)	11, 41
HpyCH4III	ACNGT	2 cut(s)	92, 263
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	120, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	5 cut(s)	30, 63, 291, 318, 344
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	167, 257
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	13, 44
Lsp1109I	GCAGC	1 cut(s)	421
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	92, 326
MboII	GAAGA	2 cut(s)	187, 222
MfeI	CAATTG	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	2 cut(s)	30, 377
MnlI	CCTC	8 cut(s)	4, 58, 72, 124, 208, 238, 286, 353
MroNI	GCCGGC	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	162, 240
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	42, 72
MunI	CAATTG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	421
NaeI	GCCGGC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	167, 257
NlaIV	GGNNCC	2 cut(s)	46, 76
NspI	RCATGY	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	46, 76
PspPI	GGNCC	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	2 cut(s)	162, 240
SatI	GCNGC	1 cut(s)	435
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	9 cut(s)	59, 126, 135, 213, 279, 345, 381, 417, 442
SfuI	TTCGAA	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	162, 240
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	92, 263
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	205
XceI	RCATGY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.