Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Forward (+)

9205800 .. 9207417

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCTGACGACGAGCACCACTTTGAGGCCAGCGAATCCGGAGCTTCCAAGACCTATCCTCAATCAGCCGGTAACATCCGTAAAGGTGGTCACATCGTCATCAAAAACCGTCCCTGCAAGGTTGTTGAGGTTTCGACTTCCAAAACTGGCAAGCACGGTCACGCCAAATGTCACTTTGTTGCTATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCATCTTCCCACAATTGTGATGTTCCACATGTGAACCGTGTTGATTACCAGTTGATTGATATCACTGAGGATGGCTTCGTGAGCCTTCTCACTGACAGTGGTGGCACCAAGGATGATCTCAAGCTTCCCACCGATGATGGTCTCACCGCCCAGATGAGGCTTGGATTCGATGAGGGAAAGGATATTGTGGTGTCTGTCATGTCTTCCATGGGAGAGGAGCAGATCTGTGCCGTCAAGGAAGTTGGTGGTGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008135 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009888 GO:0009987 GO:0010035 GO:0010038 GO:0010087 GO:0010089 GO:0010467 GO:0012501 GO:0019538 GO:0032502 GO:0034050 GO:0034641 GO:0034645 GO:0042221 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0046686 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0097159 GO:0098542 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

159

Amino Acids

17.14

Weight (kDa)

5.55

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF5A-like_N	PF21485	16 - 78	1.1e-36	Translation initiation factor 5A-like, N-terminal
eIF-5a	PF01287	84 - 126	2.3e-14	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	25, 378
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	212
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	44, 208, 346
AluI	AGCT	3 cut(s)	44, 208, 346
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	3 cut(s)	232, 287, 353
BceAI	ACGGC	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	444
BmiI	GGNNCC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	330, 429
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 378
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	151, 271
Bse8I	GATNNNNATC	1 cut(s)	281
BseAI	TCCGGA	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	330, 429
BseGI	GGATG	3 cut(s)	75, 298, 340
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	25, 378
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	151, 271
BseRI	GAGGAG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	39, 69
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	25, 378
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	337, 444
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	151, 271
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	330, 429
BssMI	GATC	2 cut(s)	337, 444
BssT1I	CCWWGG	2 cut(s)	330, 429
Bst4CI	ACNGT	4 cut(s)	110, 158, 260, 320
BstC8I	GCNNGC	2 cut(s)	31, 152
BstDEI	CTNAG	2 cut(s)	201, 288
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	3 cut(s)	75, 298, 340
BstKTI	GATC	2 cut(s)	340, 447
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	337, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	75, 298, 340
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	4 cut(s)	195, 285, 312, 325
Cac8I	GCNNGC	2 cut(s)	31, 152
Cfr10I	RCCGGY	1 cut(s)	68
CviAII	CATG	3 cut(s)	251, 421, 430
CviJI	RGCY	8 cut(s)	29, 44, 68, 208, 297, 306, 346, 382
CviKI_1	RGCY	8 cut(s)	29, 44, 68, 208, 297, 306, 346, 382
DdeI	CTNAG	2 cut(s)	201, 288
DpnI	GATC	2 cut(s)	339, 446
DpnII	GATC	2 cut(s)	337, 444
Eco130I	CCWWGG	2 cut(s)	330, 429
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	2 cut(s)	190, 283
EcoRV	GATATC	2 cut(s)	190, 283
EcoT14I	CCWWGG	2 cut(s)	330, 429
ErhI	CCWWGG	2 cut(s)	330, 429
FaeI	CATG	3 cut(s)	254, 424, 433
FaiI	YATR	3 cut(s)	252, 422, 431
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	3 cut(s)	250, 420, 429
FokI	GGATG	3 cut(s)	62, 305, 347
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	39, 69
Hin1II	CATG	3 cut(s)	254, 424, 433
HindIII	AAGCTT	2 cut(s)	206, 344
HinfI	GANTC	2 cut(s)	35, 387
HpaII	CCGG	2 cut(s)	39, 69
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	39, 301
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	4 cut(s)	110, 158, 260, 320
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	2 cut(s)	201, 288
Hsp92II	CATG	3 cut(s)	254, 424, 433
Kpn2I	TCCGGA	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	337, 444
LmnI	GCTCC	2 cut(s)	41, 439
LpnPI	CCDG	7 cut(s)	43, 52, 82, 127, 132, 284, 386
MaeIII	GTNAC	4 cut(s)	71, 89, 158, 170
MalI	GATC	2 cut(s)	339, 446
MboI	GATC	2 cut(s)	337, 444
MboII	GAAGA	4 cut(s)	184, 219, 224, 417
MfeI	CAATTG	1 cut(s)	235
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	235
MnlI	CCTC	7 cut(s)	19, 69, 121, 283, 372, 388, 430
MroI	TCCGGA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	2 cut(s)	39, 69
MunI	CAATTG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	303
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	2 cut(s)	337, 444
NlaIII	CATG	3 cut(s)	254, 424, 433
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	3 cut(s)	89, 158, 170
NspI	RCATGY	1 cut(s)	254
OliI	CACNNNNGTG	1 cut(s)	237
PciI	ACATGT	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	35, 387
PscI	ACATGT	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	337, 444
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	7 cut(s)	46, 56, 88, 123, 132, 210, 348
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	330, 429
TaaI	ACNGT	4 cut(s)	110, 158, 260, 320
TaqI	TCGA	2 cut(s)	134, 390
TasI	AATT	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	35, 387
TscAI	CASTG	4 cut(s)	202, 292, 319, 325
TseFI	GTSAC	3 cut(s)	89, 158, 170
Tsp45I	GTSAC	3 cut(s)	89, 158, 170
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	4 cut(s)	202, 292, 319, 325
XceI	RCATGY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.