Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8316413.1

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 904

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8316413.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 379 bp

ttttttttccgatgttctgcaggttgtggaggtttccacttccaaaaccggcaagcacggacatgccaagtgccactttgttggtattgacatcttcactgccaagaagcttgaggatattgttccctcttcccacaattgtgatgttccccatgtcaaccgtaccgactaccagctgattgatatctctgaggacggatttgtgagtctgctgactgagaatggtaacaccaaggatgacctgaggcttccaaccgatgacaatctgcttacgcagatcaaggatggctttgctgaggggaaagacctggttgtgtctgtgatgtctgctatgggcgaggagcagatttgtgctctcaaggatatcggtccaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

125

Amino Acids

13.7

Weight (kDa)

4.8

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	307
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	110, 176
AluI	AGCT	2 cut(s)	110, 176
Alw21I	GWGCWC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	369
AxyI	CCTNAGG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	132, 342
BsaBI	GATNNNNATC	2 cut(s)	183, 262
BsaJI	CCNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	48
Bse21I	CCTNAGG	1 cut(s)	243
Bse8I	GATNNNNATC	2 cut(s)	183, 262
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	242, 290
BseJI	GATNNNNATC	2 cut(s)	183, 262
BseMII	CTCAG	4 cut(s)	181, 208, 234, 286
BseRI	GAGGAG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	277
BspCNI	CTCAG	4 cut(s)	182, 209, 235, 287
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	190, 217, 243, 295
BstF5I	GGATG	2 cut(s)	242, 290
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	242, 290
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	369
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	63, 153
CviJI	RGCY	4 cut(s)	110, 176, 248, 289
CviKI_1	RGCY	4 cut(s)	110, 176, 248, 289
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	4 cut(s)	190, 217, 243, 295
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	232
Eco32I	GATATC	2 cut(s)	185, 365
Eco47I	GGWCC	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	307
EcoRV	GATATC	2 cut(s)	185, 365
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	66, 156
FaiI	YATR	3 cut(s)	64, 154, 333
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 273, 305
FatI	CATG	2 cut(s)	62, 152
FokI	GGATG	2 cut(s)	249, 297
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	2 cut(s)	66, 156
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	11, 191
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	20
HpyF3I	CTNAG	4 cut(s)	190, 217, 243, 295
Hsp92II	CATG	2 cut(s)	66, 156
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	6 cut(s)	6, 62, 186, 255, 294, 321
MabI	ACCWGGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	86, 121
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	7 cut(s)	23, 107, 137, 185, 238, 290, 332
MslI	CAYNNNNRTG	2 cut(s)	61, 139
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	66, 156
NspI	RCATGY	1 cut(s)	66
OliI	CACNNNNGTG	1 cut(s)	139
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	61, 139
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	6 cut(s)	25, 34, 112, 178, 244, 310
SexAI	ACCWGGT	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	369
SmiMI	CAYNNNNRTG	2 cut(s)	61, 139
SmlI	CTYRAG	2 cut(s)	111, 357
SmoI	CTYRAG	2 cut(s)	111, 357
Sse9I	AATT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	162
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	1 cut(s)	137
TscAI	CASTG	1 cut(s)	104
TspGWI	ACGGA	2 cut(s)	73, 211
TspRI	CASTG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	369
XceI	RCATGY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.