Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Forward (+)

3888910 .. 3890719

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCGGACGAGGAGCACCACTTTGAATCGAAGGCCGACGCCGGAGCTTCCAAGACCTACCCTCAGCAGGCCGGTACCATCCGCAAGAACGGTTACATTGTCATCAAGGCCAGACCATGCAAGGTTGTGGAAGTTTCCACCTCCAAGACTGGAAAGCACGGTCATGCCAAGTGCCACTTTGTCGGTATCGACATCTTCACTGCCAAGAAGCTTGAGGATATTGTTCCGTCTTCCCACAATTGTGATGTTCCACATGTCAACCGTACTGACTACCAGCTGATCGATATCTCTGAGGATGGATTTGTGAGTCTGCTGACTGAGAATGGTAACACCAAGGACGACCTGAGACTTCCAACCGATGACAATCTGCTTACGCAGATCAAGGATGGGTTTGCTGAGGGGAACGATCTGGTTGTTTCTGTCATGTCTGCTATGGGAGAGGAGCAGATTTGCGCCCTGAAGGACATCGGTCCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

160

Amino Acids

17.4

Weight (kDa)

5.43

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	76, 265
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	26
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	47, 211, 277
AluI	AGCT	3 cut(s)	47, 211, 277
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	340
AoxI	GGCC	3 cut(s)	33, 69, 108
Asp718I	GGTACC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	2 cut(s)	63, 396
BccI	CCATC	3 cut(s)	86, 290, 380
BcoDI	GTCTC	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	76, 472
BoxI	GACNNNNGTC	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	222
Bpu10I	CCTNAGC	2 cut(s)	63, 396
BpuEI	CTTGAG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	2 cut(s)	284, 363
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	2 cut(s)	284, 363
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	78, 301, 391
BseJI	GATNNNNATC	2 cut(s)	284, 363
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	5 cut(s)	77, 282, 309, 335, 387
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	2 cut(s)	26, 455
BshFI	GGCC	3 cut(s)	35, 71, 110
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	42, 72
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	3 cut(s)	35, 71, 110
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	279, 378, 406
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	3 cut(s)	35, 71, 110
BspCNI	CTCAG	5 cut(s)	76, 283, 310, 336, 388
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	76, 472
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	3 cut(s)	279, 378, 406
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	92, 161, 263
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	5 cut(s)	63, 291, 318, 344, 396
BstF5I	GGATG	3 cut(s)	78, 301, 391
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	282, 381, 409
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	3 cut(s)	279, 378, 406
BstNSI	RCATGY	1 cut(s)	257
BstPAI	GACNNNNGTC	1 cut(s)	468
BstV2I	GAAGAC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	35, 71, 110
BsuTUI	ATCGAT	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	78, 301, 391
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	75, 264
CviAII	CATG	4 cut(s)	117, 164, 254, 424
CviJI	RGCY	6 cut(s)	35, 47, 71, 110, 211, 277
CviKI_1	RGCY	6 cut(s)	35, 47, 71, 110, 211, 277
CviQI	GTAC	2 cut(s)	75, 264
DdeI	CTNAG	5 cut(s)	63, 291, 318, 344, 396
DpnI	GATC	3 cut(s)	281, 380, 408
DpnII	GATC	3 cut(s)	279, 378, 406
Eco130I	CCWWGG	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	479
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	4 cut(s)	120, 167, 257, 427
FaiI	YATR	5 cut(s)	118, 165, 255, 425, 434
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	4 cut(s)	116, 163, 253, 423
FokI	GGATG	3 cut(s)	65, 308, 398
GlaI	GCGC	1 cut(s)	454
HaeIII	GGCC	3 cut(s)	35, 71, 110
HapII	CCGG	2 cut(s)	42, 72
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	120, 167, 257, 427
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	26, 307
HpaII	CCGG	2 cut(s)	42, 72
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	7, 292
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	25, 454
HpyCH4III	ACNGT	3 cut(s)	92, 161, 263
HpyCH4V	TGCA	1 cut(s)	120
HpyF3I	CTNAG	5 cut(s)	63, 291, 318, 344, 396
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	120, 167, 257, 427
HspAI	GCGC	1 cut(s)	453
KpnI	GGTACC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	279, 378, 406
LmnI	GCTCC	3 cut(s)	13, 44, 442
LpnPI	CCDG	9 cut(s)	53, 55, 85, 124, 135, 287, 356, 395, 470
MaeIII	GTNAC	2 cut(s)	92, 326
MalI	GATC	3 cut(s)	281, 380, 408
MboI	GATC	3 cut(s)	279, 378, 406
MboII	GAAGA	2 cut(s)	187, 222
MfeI	CAATTG	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	4, 72, 151, 208, 286, 391, 433
MslI	CAYNNNNRTG	2 cut(s)	162, 240
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	42, 72
MunI	CAATTG	1 cut(s)	238
NdeII	GATC	3 cut(s)	279, 378, 406
NlaIII	CATG	4 cut(s)	120, 167, 257, 427
NlaIV	GGNNCC	2 cut(s)	76, 472
NspI	RCATGY	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	240
PciI	ACATGT	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PscI	ACATGT	1 cut(s)	253
PshAI	GACNNNNGTC	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	76, 472
PspPI	GGNCC	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	76, 265
RsaNI	GTAC	2 cut(s)	75, 264
RseI	CAYNNNNRTG	2 cut(s)	162, 240
Sau3AI	GATC	3 cut(s)	279, 378, 406
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	7 cut(s)	49, 59, 126, 143, 213, 279, 345
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	162, 240
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	92, 161, 263
TaqI	TCGA	3 cut(s)	29, 189, 282
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	470
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.