Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377829.1

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Reverse (-)

215 .. 1153

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

gttgttgaagtctccacttccaagacaggaaagcacggtcatgctaagtgccactttgttgcaattgatatcttcaatggcaagaagcttgaggatatcgtcccttcatcccacaattgtgatgttcctcatgtgaaccgtactgactaccagctgattgatatctctgaagatggctttgtgagtctcctgactgaaaatggaaacaccaaggatgatctgaggcttcccactgatgatgctctgctcactcagcttaaggatggatttgctgagggcaaggatcttgtggtgactgtcatgtctgcaatgggagaggagcagatctgtgccctcaaggacattggtcccaagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

119

Amino Acids

12.96

Weight (kDa)

4.91

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	142
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	8, 76
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	3 cut(s)	88, 154, 256
AluI	AGCT	3 cut(s)	88, 154, 256
Alw26I	GTCTC	2 cut(s)	16, 191
AlwI	GGATC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	167, 257
BcoDI	GTCTC	2 cut(s)	16, 191
BfrI	CTTAAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	349
BmsI	GCATC	1 cut(s)	229
BoxI	GACNNNNGTC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	110, 320
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	107, 220, 268
BseJI	GATNNNNATC	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	212, 264, 266
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	86, 333
BsmAI	GTCTC	2 cut(s)	16, 191
BsmFI	GGGAC	2 cut(s)	86, 333
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	217, 283, 324
BspCNI	CTCAG	3 cut(s)	213, 265, 265
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	291
BspTI	CTTAAG	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	217, 283, 324
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	38, 140, 298
BstAFI	CTTAAG	1 cut(s)	257
BstDEI	CTNAG	4 cut(s)	45, 221, 252, 273
BstF5I	GGATG	3 cut(s)	107, 220, 268
BstKTI	GATC	3 cut(s)	220, 286, 327
BstMAI	GTCTC	2 cut(s)	16, 191
BstMBI	GATC	3 cut(s)	217, 283, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	283, 324
BstYI	RGATCY	2 cut(s)	283, 324
BtsCI	GGATG	3 cut(s)	107, 220, 268
BtsIMutI	CAGTG	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	3 cut(s)	41, 131, 301
CviJI	RGCY	5 cut(s)	88, 154, 177, 226, 256
CviKI_1	RGCY	5 cut(s)	88, 154, 177, 226, 256
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	4 cut(s)	45, 221, 252, 273
DpnI	GATC	3 cut(s)	219, 285, 326
DpnII	GATC	3 cut(s)	217, 283, 324
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	210
Eco32I	GATATC	3 cut(s)	70, 97, 163
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	189
EcoRV	GATATC	3 cut(s)	70, 97, 163
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	44, 134, 304
FaiI	YATR	3 cut(s)	42, 132, 302
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	2 cut(s)	86, 333
FatI	CATG	3 cut(s)	40, 130, 300
FokI	GGATG	3 cut(s)	94, 227, 275
Hin1II	CATG	3 cut(s)	44, 134, 304
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	169, 222
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	3 cut(s)	38, 140, 298
HpyCH4V	TGCA	2 cut(s)	62, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	4 cut(s)	45, 221, 252, 273
Hsp92II	CATG	3 cut(s)	44, 134, 304
Kzo9I	GATC	3 cut(s)	217, 283, 324
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	3 cut(s)	12, 164, 203
LweI	GCATC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	3 cut(s)	219, 285, 326
MboI	GATC	3 cut(s)	217, 283, 324
MboII	GAAGA	2 cut(s)	64, 182
MfeI	CAATTG	2 cut(s)	63, 115
MflI	RGATCY	2 cut(s)	283, 324
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	3 cut(s)	63, 115, 355
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	6 cut(s)	85, 138, 216, 268, 310, 344
MseI	TTAA	2 cut(s)	258, 358
MslI	CAYNNNNRTG	2 cut(s)	39, 117
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	257
MunI	CAATTG	2 cut(s)	63, 115
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	3 cut(s)	217, 283, 324
NlaIII	CATG	3 cut(s)	44, 134, 304
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	117
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PshAI	GACNNNNGTC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	283, 324
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	39, 117
SaqAI	TTAA	2 cut(s)	258, 358
Sau3AI	GATC	3 cut(s)	217, 283, 324
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	3 cut(s)	90, 156, 258
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	39, 117
SmlI	CTYRAG	3 cut(s)	89, 257, 335
SmoI	CTYRAG	3 cut(s)	89, 257, 335
Sse9I	AATT	3 cut(s)	63, 115, 355
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	38, 140, 298
TasI	AATT	3 cut(s)	63, 115, 355
Tru1I	TTAA	2 cut(s)	258, 358
Tru9I	TTAA	2 cut(s)	258, 358
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.