Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023131.1

Orthogroup ID

OG0004642

Physical Location & Seq

Genomic Coordinates Reverse (-)

673 .. 2376

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023131.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgtctgacgaggagcaccagttcgaatccaaggccgacgccggagcttccaagacctaccctcagcaagccggaaccatccgtaagaacggctacatcgtcatcaaggccaggccttgcaaggttgttgaagtctccacttccaagacaggaaagcacggtcatgctaagtgccactttgttgcaattgatatcttcaatggcaagaagcttgaggatatcgtcccttcatcccacaattgtgatgttcctcatgtgaaccgtactgactaccagctgattgatatctctgaagatggctttgtgagtctcctgactgaaaatggaaacaccaaggatgatctgaggcttcccactgatgatgctctgctcactcagcttaaggatggatttgctgagggcaaggatcttgtggtgactgtcatgtctgcaatgggagaggagcagatctgtgccctcaaggacattggtcccaagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

160

Amino Acids

17.5

Weight (kDa)

5.47

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13950 AT1G26630 AT1G26630 AT1G69410
fragaria_vesca	FvH4_1g00990 FvH4_4g30601
malus_domestica	MD02G1008000.v1.1 MD13G1067300.v1.1 MD15G1152300.v1.1 MD16G1066400.v1.1
prunus_persica	Prupe.1G280900_v2.0.a1 Prupe.7G262400_v2.0.a1
pyrus_communis	pycom02g00700 pycom13g05920 pycom15g13690 pycom16g05780
rosa_chinensis	RchiOBHm_Chr2g0085721 RchiOBHm_Chr4g0439011
rosa_laevigata	RLG00000006311 RLG00000015714
rosa_multiflora	Rmu_co8316413.1_g000001 Rmu_co8377829.1_g000001 Rmu_sc0009759.1_g000010 Rmu_sc0018732.1_g000002 Rmu_sc0023131.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380020
rosa_rugosa	Rorug01G0462800 Rorug04G0315100
rosa_samantha	Rh4CG391000 Rh4DG371600
rosa_wichuraiana	Rw2G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	265
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	131, 199
AjnI	CCWGG	1 cut(s)	110
AleI	CACNNNNGTG	1 cut(s)	240
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	4 cut(s)	47, 211, 277, 379
AluI	AGCT	4 cut(s)	47, 211, 277, 379
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	139, 314
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	3 cut(s)	33, 108, 113
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	427
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	2 cut(s)	63, 396
BccI	CCATC	3 cut(s)	86, 290, 380
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	139, 314
BfrI	CTTAAG	1 cut(s)	380
BglII	AGATCT	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	76, 472
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	468
Bpu10I	CCTNAGC	2 cut(s)	63, 396
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	233, 443
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	30, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	30, 333
BseGI	GGATG	4 cut(s)	78, 230, 343, 391
BseJI	GATNNNNATC	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	4 cut(s)	77, 335, 387, 389
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	26, 455
BseSI	GKGCMC	1 cut(s)	457
BshFI	GGCC	3 cut(s)	35, 110, 115
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	42, 72
BslFI	GGGAC	2 cut(s)	209, 456
BsmAI	GTCTC	2 cut(s)	139, 314
BsmFI	GGGAC	2 cut(s)	209, 456
BsnI	GGCC	3 cut(s)	35, 110, 115
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	18, 457
Bsp143I	GATC	3 cut(s)	340, 406, 447
BspANI	GGCC	3 cut(s)	35, 110, 115
BspCNI	CTCAG	4 cut(s)	76, 336, 388, 388
BspLI	GGNNCC	2 cut(s)	76, 472
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	30, 333
BssMI	GATC	3 cut(s)	340, 406, 447
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	30, 333
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	3 cut(s)	161, 263, 421
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	5 cut(s)	63, 168, 344, 375, 396
BstF5I	GGATG	4 cut(s)	78, 230, 343, 391
BstKTI	GATC	3 cut(s)	343, 409, 450
BstMAI	GTCTC	2 cut(s)	139, 314
BstMBI	GATC	3 cut(s)	340, 406, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	112
BstPAI	GACNNNNGTC	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	457
BstX2I	RGATCY	2 cut(s)	406, 447
BstYI	RGATCY	2 cut(s)	406, 447
BsuRI	GGCC	3 cut(s)	35, 110, 115
BtsCI	GGATG	4 cut(s)	78, 230, 343, 391
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	3 cut(s)	164, 254, 424
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	5 cut(s)	63, 168, 344, 375, 396
DpnI	GATC	3 cut(s)	342, 408, 449
DpnII	GATC	3 cut(s)	340, 406, 447
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	30, 333
Eco147I	AGGCCT	1 cut(s)	115
Eco32I	GATATC	3 cut(s)	193, 220, 286
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	110
EcoRV	GATATC	3 cut(s)	193, 220, 286
EcoT14I	CCWWGG	2 cut(s)	30, 333
ErhI	CCWWGG	2 cut(s)	30, 333
FaeI	CATG	3 cut(s)	167, 257, 427
FaiI	YATR	3 cut(s)	165, 255, 425
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	2 cut(s)	209, 456
FatI	CATG	3 cut(s)	163, 253, 423
FokI	GGATG	4 cut(s)	65, 217, 350, 398
HaeIII	GGCC	3 cut(s)	35, 110, 115
HapII	CCGG	2 cut(s)	42, 72
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	167, 257, 427
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	26, 307
HpaII	CCGG	2 cut(s)	42, 72
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	7, 292, 345
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	3 cut(s)	161, 263, 421
HpyCH4V	TGCA	3 cut(s)	120, 185, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	5 cut(s)	63, 168, 344, 375, 396
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	167, 257, 427
Kzo9I	GATC	3 cut(s)	340, 406, 447
LmnI	GCTCC	3 cut(s)	13, 44, 442
LpnPI	CCDG	8 cut(s)	32, 55, 85, 97, 124, 135, 287, 326
LweI	GCATC	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	342, 408, 449
MboI	GATC	3 cut(s)	340, 406, 447
MboII	GAAGA	2 cut(s)	187, 305
MfeI	CAATTG	2 cut(s)	186, 238
MflI	RGATCY	2 cut(s)	406, 447
MhlI	GDGCHC	2 cut(s)	18, 457
MluCI	AATT	3 cut(s)	186, 238, 478
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	8 cut(s)	4, 72, 208, 261, 339, 391, 433, 467
MseI	TTAA	2 cut(s)	381, 481
MslI	CAYNNNNRTG	2 cut(s)	162, 240
MspA1I	CMGCKG	1 cut(s)	277
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	2 cut(s)	42, 72
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	2 cut(s)	186, 238
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	3 cut(s)	340, 406, 447
NlaIII	CATG	3 cut(s)	167, 257, 427
NlaIV	GGNNCC	2 cut(s)	76, 472
NmuCI	GTSAC	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PshAI	GACNNNNGTC	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	76, 472
PspPI	GGNCC	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	406, 447
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	2 cut(s)	162, 240
SaqAI	TTAA	2 cut(s)	381, 481
Sau3AI	GATC	3 cut(s)	340, 406, 447
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	18, 457
SetI	ASST	6 cut(s)	49, 59, 126, 213, 279, 381
SfaNI	GCATC	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	162, 240
SmlI	CTYRAG	3 cut(s)	212, 380, 458
SmoI	CTYRAG	3 cut(s)	212, 380, 458
Sse9I	AATT	3 cut(s)	186, 238, 478
SseBI	AGGCCT	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	2 cut(s)	30, 333
TaaI	ACNGT	3 cut(s)	161, 263, 421
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	186, 238, 478
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	381, 481
Tru9I	TTAA	2 cut(s)	381, 481
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.