AT1G13960
WRKY Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4776283 .. 4779420
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13960.1

Sequence Viewer

Length: 1545 bp
ATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCCACCGGAGCTCCGTCGCGTCCGACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAACGGTGGCGTTGGATTCAGTCCTGGTCCGATGACTCTGGTCTCTAATATGTTCCCTGATTCCGATGAGTTTAGGTCTTTCTCTCAGCTTCTCGCTGGAGCCATGTCTTCTCCAGCGACTGCAGCTGCTGCTGCTGCTGCTGCGACGGCTAGTGATTACCAGAGACTTGGTGAAGGGACTAATAGCTCTAGTGGTGATGTTGACCCGAGATTCAAGCAAAACAGACCAACCGGTTTGATGATTTCTCAATCTCAATCGCCGTCGATGTTCACCGTACCGCCTGGTTTAAGTCCAGCTATGTTGCTCGATTCACCAAGCTTTTTGGGTCTTTTCTCTCCCGTTCAGGGATCATATGGAATGACACATCAGCAAGCTCTAGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACAGAGTACCCTCCTCCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCGCAGATCCCGACCTCGGCTCCACTACCAGCTCAAAGAGAAACCTCAGATGTAACCATCATAGAGCACAGGTCACAACAGCCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCGAAAATATGGGCAAAAGCAAGTTAAAGGTAGCGAGTTTCCACGAAGCTATTACAAGTGTACTAATCCAGGATGTCCTGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAGATTATCTACAAAGGTCAGCACAATCATGAACCTCCTCAAAACACTAAGCGAGGTAACAAAGATAACACCGCGAATATAAATGGGAGTTCGATAAATAACAATCGCGGGAGTTCTGAATTGGGGGCATCACAGTTTCAAACTAATAGCTCCAACAAGACTAAGAGAGAGCAACATGAAGCAGTAAGTCAAGCTACGACAACAGAGCACTTGTCTGAGGCAAGTGACGGTGAAGAAGTTGGTAATGGAGAAACTGATGTGAGAGAGAAAGATGAGAATGAGCCTGATCCCAAGAGAAGAAGTACAGAAGTTCGGATTTCAGAACCAGCTCCTGCTGCTTCACATAGAACTGTGACAGAGCCTAGAATTATTGTCCAAACGACGAGTGAAGTTGATCTTCTAGATGATGGATATAGGTGGCGTAAATATGGACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGGAGCTACTACAAGTGCACAACACCAGGATGTGGTGTGAGGAAACATGTAGAGAGAGCAGCAACAGATCCAAAAGCTGTAGTAACAACATATGAAGGAAAACATAACCATGACCTTCCCGCTGCTAAATCAAGCAGCCATGCCGCTGCAGCGGCACAGTTAAGGCCAGATAATCGACCTGGCGGTTTGGCTAACTTAAATCAACAGCAGCAGCAACAGCCCGTTGCGCGGCTAAGGCTTAAAGAAGAGCAAACAACTTGA

Protein Analysis

514

Amino Acids

55.81

Weight (kDa)

8.18

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 229 - 285 7.7e-28 WRKY DNA -binding domain
WRKY PF03106 409 - 466 1.2e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 1316
AccI GTMKAC 1 cut(s) 26
AccII CGCG 4 cut(s) 55, 896, 930, 1513
AciI CCGC 8 cut(s) 380, 894, 930, 1404, 1428, 1436, 1467, 1513
AclWI GGATC 4 cut(s) 457, 580, 1103, 1346
AcoI YGGCCR 1 cut(s) 80
AfaI GTAC 4 cut(s) 378, 539, 763, 1126
AfiI CCNNNNNNNGG 4 cut(s) 446, 595, 1316, 1512
AflIII ACRYGT 1 cut(s) 1330
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 4 cut(s) 316, 506, 560, 962
AjnI CCWGG 5 cut(s) 124, 382, 769, 1309, 1462
Alw21I GWGCWC 4 cut(s) 49, 648, 1032, 1304
Alw26I GTCTC 2 cut(s) 148, 259
Alw44I GTGCAC 1 cut(s) 1300
AlwI GGATC 4 cut(s) 457, 580, 1103, 1346
AlwNI CAGNNNCTG 3 cut(s) 221, 230, 1154
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 2 cut(s) 80, 1448
ApaLI GTGCAC 1 cut(s) 1300
AsiGI ACCGGT 1 cut(s) 332
AspLEI GCGC 2 cut(s) 583, 1513
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 5 cut(s) 284, 308, 364, 405, 1064
AvaI CYCGRG 1 cut(s) 307
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 1304
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 4 cut(s) 49, 648, 1032, 1304
BccI CCATC 4 cut(s) 644, 683, 803, 1223
BceAI ACGGC 4 cut(s) 67, 95, 264, 346
BciT130I CCWGG 5 cut(s) 126, 384, 771, 1311, 1464
BcoDI GTCTC 2 cut(s) 148, 259
BfaI CTAG 5 cut(s) 252, 291, 479, 1185, 1223
BfmI CTRYAG 3 cut(s) 222, 1362, 1431
BglII AGATCT 1 cut(s) 800
Bme1390I CCNGG 5 cut(s) 126, 384, 771, 1311, 1464
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 202, 600
BmrFI CCNGG 5 cut(s) 126, 384, 771, 1311, 1464
BmsI GCATC 1 cut(s) 959
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 2 cut(s) 198, 219
Bpu10I CCTNAGC 1 cut(s) 1517
BpuEI CTTGAG 3 cut(s) 468, 480, 537
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 77, 594, 1283
BsaWI WCCGGW 2 cut(s) 41, 332
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 583, 613
Bsc4I CCNNNNNNNGG 4 cut(s) 446, 595, 1316, 1512
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 704
BseBI CCWGG 5 cut(s) 126, 384, 771, 1311, 1464
BseDI CCNNGG 3 cut(s) 77, 594, 1283
BseGI GGATG 2 cut(s) 779, 1319
BseLI CCNNNNNNNGG 4 cut(s) 446, 595, 1316, 1512
BseMII CTCAG 3 cut(s) 200, 639, 1029
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 3 cut(s) 534, 849, 1300
BseSI GKGCMC 1 cut(s) 1304
BseX3I CGGCCG 1 cut(s) 80
Bsh1236I CGCG 4 cut(s) 55, 896, 930, 1513
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 82, 1450
BshTI ACCGGT 1 cut(s) 332
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 4 cut(s) 49, 648, 1032, 1304
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 2 cut(s) 42, 333
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 4 cut(s) 446, 595, 1316, 1512
BsmAI GTCTC 2 cut(s) 148, 259
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 2 cut(s) 82, 1450
Bso31I GGTCTC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 4 cut(s) 49, 648, 1032, 1304
Bsp143I GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
BspACI CCGC 8 cut(s) 380, 894, 930, 1404, 1428, 1436, 1467, 1513
BspANI GGCC 2 cut(s) 82, 1450
BspCNI CTCAG 3 cut(s) 199, 638, 1030
BspFNI CGCG 4 cut(s) 55, 896, 930, 1513
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 202, 600
BspMAI CTGCAG 2 cut(s) 226, 1435
BspPI GGATC 4 cut(s) 457, 580, 1103, 1346
BspQI GCTCTTC 1 cut(s) 1524
BspTNI GGTCTC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 1 cut(s) 704
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 3 cut(s) 77, 594, 1283
BssMI GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
Bst2UI CCWGG 5 cut(s) 126, 384, 771, 1311, 1464
Bst4CI ACNGT 6 cut(s) 107, 376, 957, 1052, 1174, 1443
Bst6I CTCTTC 2 cut(s) 75, 1524
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 6 cut(s) 186, 625, 870, 984, 1038, 1517
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 779, 1319
BstFNI CGCG 4 cut(s) 55, 896, 930, 1513
BstHHI GCGC 2 cut(s) 583, 1513
BstKTI GATC 6 cut(s) 452, 588, 803, 1111, 1219, 1354
BstMAI GTCTC 2 cut(s) 148, 259
BstMBI GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
BstMCI CGRYCG 1 cut(s) 83
BstNI CCWGG 5 cut(s) 126, 384, 771, 1311, 1464
BstNSI RCATGY 1 cut(s) 1334
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 5 cut(s) 124, 382, 769, 1309, 1462
BstSFI CTRYAG 3 cut(s) 222, 1362, 1431
BstSLI GKGCMC 1 cut(s) 1304
BstUI CGCG 4 cut(s) 55, 896, 930, 1513
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 3 cut(s) 585, 800, 1351
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 3 cut(s) 585, 800, 1351
BstZI CGGCCG 1 cut(s) 80
BsuRI GGCC 2 cut(s) 82, 1450
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 779, 1319
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 474
CaiI CAGNNNCTG 3 cut(s) 221, 230, 1154
CciI TCATGA 1 cut(s) 850
CfoI GCGC 2 cut(s) 583, 1513
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 128
CseI GACGC 1 cut(s) 44
Csp6I GTAC 4 cut(s) 377, 538, 762, 1125
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 6 cut(s) 205, 851, 998, 1331, 1394, 1424
CviQI GTAC 4 cut(s) 377, 538, 762, 1125
DdeI CTNAG 6 cut(s) 186, 625, 870, 984, 1038, 1517
DpnI GATC 6 cut(s) 451, 587, 802, 1110, 1218, 1353
DpnII GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 80
EagI CGGCCG 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 75, 1524
EarI CTCTTC 2 cut(s) 75, 1524
Ecl136II GAGCTC 1 cut(s) 47
EclXI CGGCCG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 128
Eco52I CGGCCG 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 47
EcoRII CCWGG 5 cut(s) 124, 382, 769, 1309, 1462
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 6 cut(s) 208, 854, 1001, 1334, 1397, 1427
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FaqI GGGAC 1 cut(s) 292
FatI CATG 6 cut(s) 204, 850, 997, 1330, 1393, 1423
FauI CCCGC 2 cut(s) 923, 1411
FauNDI CATATG 2 cut(s) 454, 1375
FblI GTMKAC 1 cut(s) 26
FokI GGATG 2 cut(s) 786, 1326
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 5 cut(s) 252, 291, 479, 1185, 1223
GlaI GCGC 2 cut(s) 582, 1512
GsuI CTGGAG 2 cut(s) 198, 219
HaeIII GGCC 2 cut(s) 82, 1450
HapII CCGG 2 cut(s) 42, 333
HgaI GACGC 1 cut(s) 44
HhaI GCGC 2 cut(s) 583, 1513
Hin1II CATG 6 cut(s) 208, 854, 1001, 1334, 1397, 1427
Hin6I GCGC 2 cut(s) 581, 1511
HinP1I GCGC 2 cut(s) 581, 1511
HincII GTYRAC 3 cut(s) 27, 304, 673
HindII GTYRAC 3 cut(s) 27, 304, 673
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 6 cut(s) 117, 136, 161, 312, 410, 1273
HpaII CCGG 2 cut(s) 42, 333
HphI GGTGA 5 cut(s) 284, 308, 364, 405, 1064
Hpy166II GTNNAC 7 cut(s) 27, 39, 304, 372, 673, 762, 1302
Hpy188III TCNNGA 5 cut(s) 589, 784, 806, 851, 1223
Hpy8I GTNNAC 7 cut(s) 27, 39, 304, 372, 673, 762, 1302
Hpy99I CGWCG 5 cut(s) 28, 55, 250, 367, 1207
HpyAV CCTTC 4 cut(s) 269, 784, 1373, 1409
HpyCH4III ACNGT 6 cut(s) 107, 376, 957, 1052, 1174, 1443
HpyCH4V TGCA 4 cut(s) 224, 523, 1302, 1433
HpyF3I CTNAG 6 cut(s) 186, 625, 870, 984, 1038, 1517
Hsp92II CATG 6 cut(s) 208, 854, 1001, 1334, 1397, 1427
HspAI GCGC 2 cut(s) 581, 1511
Kzo9I GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
LguI GCTCTTC 1 cut(s) 1524
LmnI GCTCC 8 cut(s) 25, 44, 52, 200, 604, 977, 1156, 1287
LweI GCATC 1 cut(s) 959
MaeI CTAG 5 cut(s) 252, 291, 479, 1185, 1223
MaeIII GTNAC 8 cut(s) 487, 631, 651, 817, 878, 1046, 1174, 1366
MalI GATC 6 cut(s) 451, 587, 802, 1110, 1218, 1353
MboI GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
MboII GAAGA 8 cut(s) 26, 62, 201, 799, 1067, 1131, 1211, 1541
MflI RGATCY 3 cut(s) 585, 800, 1351
MhlI GDGCHC 4 cut(s) 49, 648, 1032, 1304
MluCI AATT 2 cut(s) 941, 1188
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 3 cut(s) 83, 94, 999
MseI TTAA 6 cut(s) 102, 389, 726, 1445, 1481, 1524
MslI CAYNNNNRTG 3 cut(s) 849, 1312, 1392
MspA1I CMGCKG 5 cut(s) 227, 683, 1406, 1430, 1436
MspI CCGG 2 cut(s) 42, 333
MspR9I CCNGG 5 cut(s) 126, 384, 771, 1311, 1464
MvaI CCWGG 5 cut(s) 126, 384, 771, 1311, 1464
MvnI CGCG 4 cut(s) 55, 896, 930, 1513
NdeI CATATG 2 cut(s) 454, 1375
NdeII GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
NlaIII CATG 6 cut(s) 208, 854, 1001, 1334, 1397, 1427
NlaIV GGNNCC 2 cut(s) 202, 600
NmeAIII GCCGAG 1 cut(s) 575
NmuCI GTSAC 4 cut(s) 487, 651, 1046, 1174
NspI RCATGY 1 cut(s) 1334
PagI TCATGA 1 cut(s) 850
PciI ACATGT 1 cut(s) 1330
PciSI GCTCTTC 1 cut(s) 1524
PfeI GAWTC 5 cut(s) 117, 161, 312, 410, 1273
PflMI CCANNNNNTGG 1 cut(s) 1316
PfoI TCCNGGA 1 cut(s) 769
PinAI ACCGGT 1 cut(s) 332
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 1330
PshAI GACNNNNGTC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 49
Psp6I CCWGG 5 cut(s) 124, 382, 769, 1309, 1462
PspGI CCWGG 5 cut(s) 124, 382, 769, 1309, 1462
PspN4I GGNNCC 2 cut(s) 202, 600
PspPI GGNCC 1 cut(s) 128
PstI CTGCAG 2 cut(s) 226, 1435
PstNI CAGNNNCTG 3 cut(s) 221, 230, 1154
PsuI RGATCY 3 cut(s) 585, 800, 1351
PvuII CAGCTG 2 cut(s) 227, 683
RsaI GTAC 4 cut(s) 378, 539, 763, 1126
RsaNI GTAC 4 cut(s) 377, 538, 762, 1125
RseI CAYNNNNRTG 3 cut(s) 849, 1312, 1392
SacI GAGCTC 1 cut(s) 49
SalI GTCGAC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 1524
SaqAI TTAA 6 cut(s) 102, 389, 726, 1445, 1481, 1524
Sau3AI GATC 6 cut(s) 449, 585, 800, 1108, 1216, 1351
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 5 cut(s) 126, 384, 771, 1311, 1464
SduI GDGCHC 4 cut(s) 49, 648, 1032, 1304
SfaNI GCATC 1 cut(s) 959
SfcI CTRYAG 3 cut(s) 222, 1362, 1431
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 3 cut(s) 849, 1312, 1392
SmlI CTYRAG 3 cut(s) 483, 495, 552
SmoI CTYRAG 3 cut(s) 483, 495, 552
Sse9I AATT 2 cut(s) 941, 1188
SsiI CCGC 8 cut(s) 380, 894, 930, 1404, 1428, 1436, 1467, 1513
SspMI CTAG 5 cut(s) 252, 291, 479, 1185, 1223
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 5 cut(s) 124, 382, 769, 1309, 1462
TaaI ACNGT 6 cut(s) 107, 376, 957, 1052, 1174, 1443
TaqI TCGA 6 cut(s) 26, 32, 365, 408, 914, 1459
TasI AATT 2 cut(s) 941, 1188
TatI WGTACW 2 cut(s) 761, 1124
TauI GCSGC 3 cut(s) 1430, 1439, 1516
TfiI GAWTC 5 cut(s) 117, 161, 312, 410, 1273
Tru1I TTAA 6 cut(s) 102, 389, 726, 1445, 1481, 1524
Tru9I TTAA 6 cut(s) 102, 389, 726, 1445, 1481, 1524
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 4 cut(s) 487, 651, 1046, 1174
Tsp45I GTSAC 4 cut(s) 487, 651, 1046, 1174
TspDTI ATGAA 4 cut(s) 558, 867, 1014, 1392
TspGWI ACGGA 3 cut(s) 12, 39, 836
TspRI CASTG 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 1316
VneI GTGCAC 1 cut(s) 1300
VpaK11BI GGWCC 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 1222
XceI RCATGY 1 cut(s) 1334
XmiI GTMKAC 1 cut(s) 26
XspI CTAG 5 cut(s) 252, 291, 479, 1185, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.