Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13960 AT1G13960 AT2G03340 |
| fragaria_vesca | FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 |
| malus_domestica | MD13G1067600.v1.1 MD16G1066500.v1.1 |
| prunus_persica | Prupe.1G280700_v2.0.a1 Prupe.1G280700_v2.0.a1 |
| pyrus_communis | pycom13g05940 pycom16g05790 |
| rosa_chinensis | RchiOBHm_Chr4g0439041 |
| rosa_laevigata | RLG00000006307 |
| rosa_multiflora | Rmu_sc0001338.1_g000004 Rmu_sc0003226.1_g000090 |
| rosa_roxburghii | Rroxscaffold_5G00380040 |
| rosa_rugosa | Rorug04G0315200 |
| rosa_samantha | Rh4AG365900 Rh4BG377200 Rh4CG391300 Rh4DG371900 |
| rosa_wichuraiana | Rw0G007420 Rw0G016970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 34 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1316 |
| AccI | GTMKAC | 1 cut(s) | 26 |
| AccII | CGCG | 4 cut(s) | 55, 896, 930, 1513 |
| AciI | CCGC | 8 cut(s) | 380, 894, 930, 1404, 1428, 1436, 1467, 1513 |
| AclWI | GGATC | 4 cut(s) | 457, 580, 1103, 1346 |
| AcoI | YGGCCR | 1 cut(s) | 80 |
| AfaI | GTAC | 4 cut(s) | 378, 539, 763, 1126 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 446, 595, 1316, 1512 |
| AflIII | ACRYGT | 1 cut(s) | 1330 |
| AgeI | ACCGGT | 1 cut(s) | 332 |
| AgsI | TTSAA | 4 cut(s) | 316, 506, 560, 962 |
| AjnI | CCWGG | 5 cut(s) | 124, 382, 769, 1309, 1462 |
| Alw21I | GWGCWC | 4 cut(s) | 49, 648, 1032, 1304 |
| Alw26I | GTCTC | 2 cut(s) | 148, 259 |
| Alw44I | GTGCAC | 1 cut(s) | 1300 |
| AlwI | GGATC | 4 cut(s) | 457, 580, 1103, 1346 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 221, 230, 1154 |
| Ama87I | CYCGRG | 1 cut(s) | 307 |
| AoxI | GGCC | 2 cut(s) | 80, 1448 |
| ApaLI | GTGCAC | 1 cut(s) | 1300 |
| AsiGI | ACCGGT | 1 cut(s) | 332 |
| AspLEI | GCGC | 2 cut(s) | 583, 1513 |
| AspS9I | GGNCC | 1 cut(s) | 128 |
| AsuHPI | GGTGA | 5 cut(s) | 284, 308, 364, 405, 1064 |
| AvaI | CYCGRG | 1 cut(s) | 307 |
| AvaII | GGWCC | 1 cut(s) | 128 |
| BaeGI | GKGCMC | 1 cut(s) | 1304 |
| BanII | GRGCYC | 1 cut(s) | 49 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| Bbv12I | GWGCWC | 4 cut(s) | 49, 648, 1032, 1304 |
| BccI | CCATC | 4 cut(s) | 644, 683, 803, 1223 |
| BceAI | ACGGC | 4 cut(s) | 67, 95, 264, 346 |
| BciT130I | CCWGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| BcoDI | GTCTC | 2 cut(s) | 148, 259 |
| BfaI | CTAG | 5 cut(s) | 252, 291, 479, 1185, 1223 |
| BfmI | CTRYAG | 3 cut(s) | 222, 1362, 1431 |
| BglII | AGATCT | 1 cut(s) | 800 |
| Bme1390I | CCNGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| Bme18I | GGWCC | 1 cut(s) | 128 |
| BmeT110I | CYCGRG | 1 cut(s) | 307 |
| BmgT120I | GGNCC | 1 cut(s) | 128 |
| BmiI | GGNNCC | 2 cut(s) | 202, 600 |
| BmrFI | CCNGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| BmsI | GCATC | 1 cut(s) | 959 |
| BoxI | GACNNNNGTC | 1 cut(s) | 140 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BpmI | CTGGAG | 2 cut(s) | 198, 219 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1517 |
| BpuEI | CTTGAG | 3 cut(s) | 468, 480, 537 |
| BsaI | GGTCTC | 1 cut(s) | 148 |
| BsaJI | CCNNGG | 3 cut(s) | 77, 594, 1283 |
| BsaWI | WCCGGW | 2 cut(s) | 41, 332 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 31, 61, 583, 613 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 446, 595, 1316, 1512 |
| Bse118I | RCCGGY | 1 cut(s) | 332 |
| Bse1I | ACTGG | 1 cut(s) | 704 |
| BseBI | CCWGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| BseDI | CCNNGG | 3 cut(s) | 77, 594, 1283 |
| BseGI | GGATG | 2 cut(s) | 779, 1319 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 446, 595, 1316, 1512 |
| BseMII | CTCAG | 3 cut(s) | 200, 639, 1029 |
| BseNI | ACTGG | 1 cut(s) | 704 |
| BseRI | GAGGAG | 3 cut(s) | 534, 849, 1300 |
| BseSI | GKGCMC | 1 cut(s) | 1304 |
| BseX3I | CGGCCG | 1 cut(s) | 80 |
| Bsh1236I | CGCG | 4 cut(s) | 55, 896, 930, 1513 |
| Bsh1285I | CGRYCG | 1 cut(s) | 83 |
| BshFI | GGCC | 2 cut(s) | 82, 1450 |
| BshTI | ACCGGT | 1 cut(s) | 332 |
| BsiEI | CGRYCG | 1 cut(s) | 83 |
| BsiHKAI | GWGCWC | 4 cut(s) | 49, 648, 1032, 1304 |
| BsiHKCI | CYCGRG | 1 cut(s) | 307 |
| BsiSI | CCGG | 2 cut(s) | 42, 333 |
| BslFI | GGGAC | 1 cut(s) | 292 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 446, 595, 1316, 1512 |
| BsmAI | GTCTC | 2 cut(s) | 148, 259 |
| BsmFI | GGGAC | 1 cut(s) | 292 |
| BsnI | GGCC | 2 cut(s) | 82, 1450 |
| Bso31I | GGTCTC | 1 cut(s) | 148 |
| BsoBI | CYCGRG | 1 cut(s) | 307 |
| Bsp1286I | GDGCHC | 4 cut(s) | 49, 648, 1032, 1304 |
| Bsp143I | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| BspACI | CCGC | 8 cut(s) | 380, 894, 930, 1404, 1428, 1436, 1467, 1513 |
| BspANI | GGCC | 2 cut(s) | 82, 1450 |
| BspCNI | CTCAG | 3 cut(s) | 199, 638, 1030 |
| BspFNI | CGCG | 4 cut(s) | 55, 896, 930, 1513 |
| BspHI | TCATGA | 1 cut(s) | 850 |
| BspLI | GGNNCC | 2 cut(s) | 202, 600 |
| BspMAI | CTGCAG | 2 cut(s) | 226, 1435 |
| BspPI | GGATC | 4 cut(s) | 457, 580, 1103, 1346 |
| BspQI | GCTCTTC | 1 cut(s) | 1524 |
| BspTNI | GGTCTC | 1 cut(s) | 148 |
| BsrFI | RCCGGY | 1 cut(s) | 332 |
| BsrI | ACTGG | 1 cut(s) | 704 |
| BssAI | RCCGGY | 1 cut(s) | 332 |
| BssECI | CCNNGG | 3 cut(s) | 77, 594, 1283 |
| BssMI | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| Bst2UI | CCWGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| Bst4CI | ACNGT | 6 cut(s) | 107, 376, 957, 1052, 1174, 1443 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 1524 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 1 cut(s) | 474 |
| BstDEI | CTNAG | 6 cut(s) | 186, 625, 870, 984, 1038, 1517 |
| BstDSI | CCRYGG | 1 cut(s) | 77 |
| BstF5I | GGATG | 2 cut(s) | 779, 1319 |
| BstFNI | CGCG | 4 cut(s) | 55, 896, 930, 1513 |
| BstHHI | GCGC | 2 cut(s) | 583, 1513 |
| BstKTI | GATC | 6 cut(s) | 452, 588, 803, 1111, 1219, 1354 |
| BstMAI | GTCTC | 2 cut(s) | 148, 259 |
| BstMBI | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| BstMCI | CGRYCG | 1 cut(s) | 83 |
| BstNI | CCWGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| BstNSI | RCATGY | 1 cut(s) | 1334 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 140 |
| BstSCI | CCNGG | 5 cut(s) | 124, 382, 769, 1309, 1462 |
| BstSFI | CTRYAG | 3 cut(s) | 222, 1362, 1431 |
| BstSLI | GKGCMC | 1 cut(s) | 1304 |
| BstUI | CGCG | 4 cut(s) | 55, 896, 930, 1513 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BstX2I | RGATCY | 3 cut(s) | 585, 800, 1351 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 269 |
| BstYI | RGATCY | 3 cut(s) | 585, 800, 1351 |
| BstZI | CGGCCG | 1 cut(s) | 80 |
| BsuRI | GGCC | 2 cut(s) | 82, 1450 |
| BtgI | CCRYGG | 1 cut(s) | 77 |
| BtsCI | GGATG | 2 cut(s) | 779, 1319 |
| BtsI | GCAGTG | 1 cut(s) | 489 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| Cac8I | GCNNGC | 1 cut(s) | 474 |
| CaiI | CAGNNNCTG | 3 cut(s) | 221, 230, 1154 |
| CciI | TCATGA | 1 cut(s) | 850 |
| CfoI | GCGC | 2 cut(s) | 583, 1513 |
| Cfr10I | RCCGGY | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 1 cut(s) | 128 |
| CseI | GACGC | 1 cut(s) | 44 |
| Csp6I | GTAC | 4 cut(s) | 377, 538, 762, 1125 |
| CspAI | ACCGGT | 1 cut(s) | 332 |
| CviAII | CATG | 6 cut(s) | 205, 851, 998, 1331, 1394, 1424 |
| CviQI | GTAC | 4 cut(s) | 377, 538, 762, 1125 |
| DdeI | CTNAG | 6 cut(s) | 186, 625, 870, 984, 1038, 1517 |
| DpnI | GATC | 6 cut(s) | 451, 587, 802, 1110, 1218, 1353 |
| DpnII | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 34 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 34 |
| EaeI | YGGCCR | 1 cut(s) | 80 |
| EagI | CGGCCG | 1 cut(s) | 80 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 1524 |
| EarI | CTCTTC | 2 cut(s) | 75, 1524 |
| Ecl136II | GAGCTC | 1 cut(s) | 47 |
| EclXI | CGGCCG | 1 cut(s) | 80 |
| Eco24I | GRGCYC | 1 cut(s) | 49 |
| Eco31I | GGTCTC | 1 cut(s) | 148 |
| Eco47I | GGWCC | 1 cut(s) | 128 |
| Eco52I | CGGCCG | 1 cut(s) | 80 |
| Eco53kI | GAGCTC | 1 cut(s) | 47 |
| Eco88I | CYCGRG | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 47 |
| EcoRII | CCWGG | 5 cut(s) | 124, 382, 769, 1309, 1462 |
| EcoT38I | GRGCYC | 1 cut(s) | 49 |
| FaeI | CATG | 6 cut(s) | 208, 854, 1001, 1334, 1397, 1427 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1203, 1235 |
| FaqI | GGGAC | 1 cut(s) | 292 |
| FatI | CATG | 6 cut(s) | 204, 850, 997, 1330, 1393, 1423 |
| FauI | CCCGC | 2 cut(s) | 923, 1411 |
| FauNDI | CATATG | 2 cut(s) | 454, 1375 |
| FblI | GTMKAC | 1 cut(s) | 26 |
| FokI | GGATG | 2 cut(s) | 786, 1326 |
| FriOI | GRGCYC | 1 cut(s) | 49 |
| FspBI | CTAG | 5 cut(s) | 252, 291, 479, 1185, 1223 |
| GlaI | GCGC | 2 cut(s) | 582, 1512 |
| GsuI | CTGGAG | 2 cut(s) | 198, 219 |
| HaeIII | GGCC | 2 cut(s) | 82, 1450 |
| HapII | CCGG | 2 cut(s) | 42, 333 |
| HgaI | GACGC | 1 cut(s) | 44 |
| HhaI | GCGC | 2 cut(s) | 583, 1513 |
| Hin1II | CATG | 6 cut(s) | 208, 854, 1001, 1334, 1397, 1427 |
| Hin6I | GCGC | 2 cut(s) | 581, 1511 |
| HinP1I | GCGC | 2 cut(s) | 581, 1511 |
| HincII | GTYRAC | 3 cut(s) | 27, 304, 673 |
| HindII | GTYRAC | 3 cut(s) | 27, 304, 673 |
| HindIII | AAGCTT | 1 cut(s) | 418 |
| HinfI | GANTC | 6 cut(s) | 117, 136, 161, 312, 410, 1273 |
| HpaII | CCGG | 2 cut(s) | 42, 333 |
| HphI | GGTGA | 5 cut(s) | 284, 308, 364, 405, 1064 |
| Hpy166II | GTNNAC | 7 cut(s) | 27, 39, 304, 372, 673, 762, 1302 |
| Hpy188III | TCNNGA | 5 cut(s) | 589, 784, 806, 851, 1223 |
| Hpy8I | GTNNAC | 7 cut(s) | 27, 39, 304, 372, 673, 762, 1302 |
| Hpy99I | CGWCG | 5 cut(s) | 28, 55, 250, 367, 1207 |
| HpyAV | CCTTC | 4 cut(s) | 269, 784, 1373, 1409 |
| HpyCH4III | ACNGT | 6 cut(s) | 107, 376, 957, 1052, 1174, 1443 |
| HpyCH4V | TGCA | 4 cut(s) | 224, 523, 1302, 1433 |
| HpyF3I | CTNAG | 6 cut(s) | 186, 625, 870, 984, 1038, 1517 |
| Hsp92II | CATG | 6 cut(s) | 208, 854, 1001, 1334, 1397, 1427 |
| HspAI | GCGC | 2 cut(s) | 581, 1511 |
| Kzo9I | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| LguI | GCTCTTC | 1 cut(s) | 1524 |
| LmnI | GCTCC | 8 cut(s) | 25, 44, 52, 200, 604, 977, 1156, 1287 |
| LweI | GCATC | 1 cut(s) | 959 |
| MaeI | CTAG | 5 cut(s) | 252, 291, 479, 1185, 1223 |
| MaeIII | GTNAC | 8 cut(s) | 487, 631, 651, 817, 878, 1046, 1174, 1366 |
| MalI | GATC | 6 cut(s) | 451, 587, 802, 1110, 1218, 1353 |
| MboI | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| MboII | GAAGA | 8 cut(s) | 26, 62, 201, 799, 1067, 1131, 1211, 1541 |
| MflI | RGATCY | 3 cut(s) | 585, 800, 1351 |
| MhlI | GDGCHC | 4 cut(s) | 49, 648, 1032, 1304 |
| MluCI | AATT | 2 cut(s) | 941, 1188 |
| MlyI | GAGTC | 1 cut(s) | 130 |
| MmeI | TCCRAC | 3 cut(s) | 83, 94, 999 |
| MseI | TTAA | 6 cut(s) | 102, 389, 726, 1445, 1481, 1524 |
| MslI | CAYNNNNRTG | 3 cut(s) | 849, 1312, 1392 |
| MspA1I | CMGCKG | 5 cut(s) | 227, 683, 1406, 1430, 1436 |
| MspI | CCGG | 2 cut(s) | 42, 333 |
| MspR9I | CCNGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| MvaI | CCWGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| MvnI | CGCG | 4 cut(s) | 55, 896, 930, 1513 |
| NdeI | CATATG | 2 cut(s) | 454, 1375 |
| NdeII | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| NlaIII | CATG | 6 cut(s) | 208, 854, 1001, 1334, 1397, 1427 |
| NlaIV | GGNNCC | 2 cut(s) | 202, 600 |
| NmeAIII | GCCGAG | 1 cut(s) | 575 |
| NmuCI | GTSAC | 4 cut(s) | 487, 651, 1046, 1174 |
| NspI | RCATGY | 1 cut(s) | 1334 |
| PagI | TCATGA | 1 cut(s) | 850 |
| PciI | ACATGT | 1 cut(s) | 1330 |
| PciSI | GCTCTTC | 1 cut(s) | 1524 |
| PfeI | GAWTC | 5 cut(s) | 117, 161, 312, 410, 1273 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1316 |
| PfoI | TCCNGGA | 1 cut(s) | 769 |
| PinAI | ACCGGT | 1 cut(s) | 332 |
| PleI | GAGTC | 1 cut(s) | 130 |
| PpsI | GAGTC | 1 cut(s) | 130 |
| PscI | ACATGT | 1 cut(s) | 1330 |
| PshAI | GACNNNNGTC | 1 cut(s) | 140 |
| Psp124BI | GAGCTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 5 cut(s) | 124, 382, 769, 1309, 1462 |
| PspGI | CCWGG | 5 cut(s) | 124, 382, 769, 1309, 1462 |
| PspN4I | GGNNCC | 2 cut(s) | 202, 600 |
| PspPI | GGNCC | 1 cut(s) | 128 |
| PstI | CTGCAG | 2 cut(s) | 226, 1435 |
| PstNI | CAGNNNCTG | 3 cut(s) | 221, 230, 1154 |
| PsuI | RGATCY | 3 cut(s) | 585, 800, 1351 |
| PvuII | CAGCTG | 2 cut(s) | 227, 683 |
| RsaI | GTAC | 4 cut(s) | 378, 539, 763, 1126 |
| RsaNI | GTAC | 4 cut(s) | 377, 538, 762, 1125 |
| RseI | CAYNNNNRTG | 3 cut(s) | 849, 1312, 1392 |
| SacI | GAGCTC | 1 cut(s) | 49 |
| SalI | GTCGAC | 1 cut(s) | 25 |
| SapI | GCTCTTC | 1 cut(s) | 1524 |
| SaqAI | TTAA | 6 cut(s) | 102, 389, 726, 1445, 1481, 1524 |
| Sau3AI | GATC | 6 cut(s) | 449, 585, 800, 1108, 1216, 1351 |
| Sau96I | GGNCC | 1 cut(s) | 128 |
| SchI | GAGTC | 1 cut(s) | 130 |
| ScrFI | CCNGG | 5 cut(s) | 126, 384, 771, 1311, 1464 |
| SduI | GDGCHC | 4 cut(s) | 49, 648, 1032, 1304 |
| SfaNI | GCATC | 1 cut(s) | 959 |
| SfcI | CTRYAG | 3 cut(s) | 222, 1362, 1431 |
| SinI | GGWCC | 1 cut(s) | 128 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 849, 1312, 1392 |
| SmlI | CTYRAG | 3 cut(s) | 483, 495, 552 |
| SmoI | CTYRAG | 3 cut(s) | 483, 495, 552 |
| Sse9I | AATT | 2 cut(s) | 941, 1188 |
| SsiI | CCGC | 8 cut(s) | 380, 894, 930, 1404, 1428, 1436, 1467, 1513 |
| SspMI | CTAG | 5 cut(s) | 252, 291, 479, 1185, 1223 |
| SstI | GAGCTC | 1 cut(s) | 49 |
| StyD4I | CCNGG | 5 cut(s) | 124, 382, 769, 1309, 1462 |
| TaaI | ACNGT | 6 cut(s) | 107, 376, 957, 1052, 1174, 1443 |
| TaqI | TCGA | 6 cut(s) | 26, 32, 365, 408, 914, 1459 |
| TasI | AATT | 2 cut(s) | 941, 1188 |
| TatI | WGTACW | 2 cut(s) | 761, 1124 |
| TauI | GCSGC | 3 cut(s) | 1430, 1439, 1516 |
| TfiI | GAWTC | 5 cut(s) | 117, 161, 312, 410, 1273 |
| Tru1I | TTAA | 6 cut(s) | 102, 389, 726, 1445, 1481, 1524 |
| Tru9I | TTAA | 6 cut(s) | 102, 389, 726, 1445, 1481, 1524 |
| TscAI | CASTG | 1 cut(s) | 496 |
| TseFI | GTSAC | 4 cut(s) | 487, 651, 1046, 1174 |
| Tsp45I | GTSAC | 4 cut(s) | 487, 651, 1046, 1174 |
| TspDTI | ATGAA | 4 cut(s) | 558, 867, 1014, 1392 |
| TspGWI | ACGGA | 3 cut(s) | 12, 39, 836 |
| TspRI | CASTG | 1 cut(s) | 496 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1316 |
| VneI | GTGCAC | 1 cut(s) | 1300 |
| VpaK11BI | GGWCC | 1 cut(s) | 128 |
| XbaI | TCTAGA | 1 cut(s) | 1222 |
| XceI | RCATGY | 1 cut(s) | 1334 |
| XmiI | GTMKAC | 1 cut(s) | 26 |
| XspI | CTAG | 5 cut(s) | 252, 291, 479, 1185, 1223 |