Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0007326

Physical Location & Seq

Genomic Coordinates Reverse (-)

312859 .. 316575

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000090.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atggctattaaattgacaacacaaaaagccatacaccacacaaacgtcgacgttagtactttaacgttaacactagttcgattcagatgctcgcatctccctcgctctcttcgcccaatttcctccttcccctcaccatctagtcttgaactgaatcgaacaagatcatggtggaagccgtcggagctgaagaagccggtgtcacggtcatggtggaagtactgctcgacgggaaccggaacaggaatggaggaggttttccaagttggttggaaggaggaaattgggacgagtccgaaagaattgtctgatatctcacattcggaacaaagatccgaaccatcttcattgactgtcgacaagcctgaaagtgcaaaattacataagttggggggacccaagcctaatgatgacggttacaattggcggaaatatgggcagaagcaggtgaaggggagtgagtttcctagaagttattataaatgcacgcatcccagttgtccagtcaagaaaaaggttgtatgctcggttgatggccagataactgaaatcatttacaagggtgagcataaccatcagcgtcctcaatctaagcgcccaaaggattctggaaatcaaaatggaaatgttcagggtcaggaatctagccaagcaatatctgggacaagtgacagtgaggaagttggagatgctgaaacaaaagtagaagaaaaagatgaagatgaaccttctgccaagagacgaaatatggaggtcaggcattcagagccagcttcttctcatcggactgtgacagagcctagaatcatagtgcagacaaccagtgaagttgatctgttagatgatggctaccggtggcgaaagtatgggcagaaagttgtcaaaggcaatccttatccaaggagctattataaatgcacattccaaggatgcaatgtacgtaagcacgtagagagagcagcaacagatcctaaagccgtcataacaacatatgagggcaaacataatcatgatgtacctgcttctaaatctggcagccactacacagccaacaacaatgcatcaaatctaagatcaggcaacccgggaactgaaaagcatgcctcagttagcatagttctgtgtttcagtcaaccaaatttgatatttccacgatcaagtgaaatctctcaagtgattttgtctgaatctgtttttcacttgtggccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043901 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1900150 GO:1900424 GO:1900425 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

403

Amino Acids

45.33

Weight (kDa)

9.18

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13960 AT1G13960 AT2G03340
fragaria_vesca	FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 FvH4_4g30640
malus_domestica	MD13G1067600.v1.1 MD16G1066500.v1.1
prunus_persica	Prupe.1G280700_v2.0.a1 Prupe.1G280700_v2.0.a1
pyrus_communis	pycom13g05940 pycom16g05790
rosa_chinensis	RchiOBHm_Chr4g0439041
rosa_laevigata	RLG00000006307
rosa_multiflora	Rmu_sc0001338.1_g000004 Rmu_sc0003226.1_g000090
rosa_roxburghii	Rroxscaffold_5G00380040
rosa_rugosa	Rorug04G0315200
rosa_samantha	Rh4AG365900 Rh4BG377200 Rh4CG391300 Rh4DG371900
rosa_wichuraiana	Rw0G007420 Rw0G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	480, 912
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	2 cut(s)	436, 1027
AccI	GTMKAC	2 cut(s)	48, 357
AciI	CCGC	1 cut(s)	427
AclI	AACGTT	1 cut(s)	65
AclWI	GGATC	2 cut(s)	327, 962
AcoI	YGGCCR	2 cut(s)	535, 1205
AcsI	RAATTY	1 cut(s)	1138
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	4 cut(s)	58, 221, 939, 1017
AgeI	ACCGGT	1 cut(s)	852
AgsI	TTSAA	1 cut(s)	149
AhlI	ACTAGT	1 cut(s)	73
AluBI	AGCT	3 cut(s)	187, 773, 906
AluI	AGCT	3 cut(s)	187, 773, 906
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	2 cut(s)	327, 962
Ama87I	CYCGRG	1 cut(s)	1084
AoxI	GGCC	2 cut(s)	535, 1205
ApeKI	GCWGC	2 cut(s)	959, 1035
ApoI	RAATTY	1 cut(s)	1138
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AsiGI	ACCGGT	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	2 cut(s)	1085, 1086
AsuHPI	GGTGA	3 cut(s)	126, 460, 575
AvaI	CYCGRG	1 cut(s)	1084
AvaII	GGWCC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	971, 1047
BccI	CCATC	5 cut(s)	145, 349, 527, 582, 839
BceAI	ACGGC	3 cut(s)	163, 962, 1192
BcgI	CGANNNNNNTGC	4 cut(s)	69, 83, 103, 117
BcnI	CCSGG	2 cut(s)	1085, 1086
BcoDI	GTCTC	1 cut(s)	733
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	5 cut(s)	74, 141, 468, 645, 801
BfoI	RGCGCY	1 cut(s)	598
BfuAI	ACCTGC	2 cut(s)	436, 1027
BisI	GCNGC	2 cut(s)	960, 1036
BlsI	GCNGC	2 cut(s)	961, 1037
BmcAI	AGTACT	2 cut(s)	58, 221
Bme1390I	CCNGG	2 cut(s)	1085, 1086
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	1084
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	3 cut(s)	235, 396, 397
BmrFI	CCNGG	2 cut(s)	1085, 1086
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	6 cut(s)	77, 103, 499, 679, 920, 1070
BmuI	ACTGGG	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	1155
BpuMI	CCSGG	2 cut(s)	1085, 1086
BsaAI	YACGTR	2 cut(s)	941, 949
BsaJI	CCNNGG	3 cut(s)	899, 925, 1084
BsaWI	WCCGGW	2 cut(s)	236, 852
Bse118I	RCCGGY	2 cut(s)	196, 852
Bse1I	ACTGG	3 cut(s)	495, 503, 822
Bse3DI	GCAATG	1 cut(s)	940
BseDI	CCNNGG	3 cut(s)	899, 925, 1084
BseGI	GGATG	2 cut(s)	490, 935
BseMI	GCAATG	1 cut(s)	940
BseMII	CTCAG	1 cut(s)	1119
BseNI	ACTGG	3 cut(s)	495, 503, 822
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	971, 1047
BsgI	GTGCAG	1 cut(s)	833
BshFI	GGCC	2 cut(s)	537, 1207
BshTI	ACCGGT	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	1084
BsiSI	CCGG	4 cut(s)	197, 237, 853, 1085
BslFI	GGGAC	3 cut(s)	301, 408, 676
BsmAI	GTCTC	1 cut(s)	733
BsmBI	CGTCTC	1 cut(s)	733
BsmFI	GGGAC	3 cut(s)	301, 408, 676
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	2 cut(s)	537, 1207
BsoBI	CYCGRG	1 cut(s)	1084
Bsp143I	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	2 cut(s)	537, 1207
BspCNI	CTCAG	1 cut(s)	1118
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	3 cut(s)	235, 396, 397
BspMI	ACCTGC	2 cut(s)	436, 1027
BspPI	GGATC	2 cut(s)	327, 962
BsrDI	GCAATG	1 cut(s)	940
BsrFI	RCCGGY	2 cut(s)	196, 852
BsrI	ACTGG	3 cut(s)	495, 503, 822
BssAI	RCCGGY	2 cut(s)	196, 852
BssECI	CCNNGG	3 cut(s)	899, 925, 1084
BssMI	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
BssT1I	CCWWGG	2 cut(s)	899, 925
Bst4CI	ACNGT	5 cut(s)	207, 355, 416, 674, 790
Bst6I	CTCTTC	1 cut(s)	114
BstBAI	YACGTR	2 cut(s)	941, 949
BstC8I	GCNNGC	4 cut(s)	92, 488, 771, 1101
BstDEI	CTNAG	3 cut(s)	591, 1070, 1105
BstF5I	GGATG	2 cut(s)	490, 935
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	6 cut(s)	167, 335, 835, 970, 1076, 1157
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 184, 193, 766
BstNSI	RCATGY	1 cut(s)	1103
BstSCI	CCNGG	2 cut(s)	1083, 1084
BstSNI	TACGTA	1 cut(s)	941
BstV1I	GCAGC	2 cut(s)	971, 1047
BstX2I	RGATCY	2 cut(s)	332, 967
BstYI	RGATCY	2 cut(s)	332, 967
BsuRI	GGCC	2 cut(s)	537, 1207
BtsCI	GGATG	2 cut(s)	490, 935
BtsIMutI	CAGTG	2 cut(s)	679, 829
BveI	ACCTGC	2 cut(s)	436, 1027
Cac8I	GCNNGC	4 cut(s)	92, 488, 771, 1101
CciI	TCATGA	1 cut(s)	1009
CfoI	GCGC	1 cut(s)	597
Cfr10I	RCCGGY	2 cut(s)	196, 852
Cfr13I	GGNCC	1 cut(s)	395
Cfr9I	CCCGGG	1 cut(s)	1084
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	4 cut(s)	57, 220, 938, 1016
CspAI	ACCGGT	1 cut(s)	852
CviAII	CATG	4 cut(s)	168, 210, 1010, 1100
CviQI	GTAC	4 cut(s)	57, 220, 938, 1016
DdeI	CTNAG	3 cut(s)	591, 1070, 1105
DpnI	GATC	6 cut(s)	166, 334, 834, 969, 1075, 1156
DpnII	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
EaeI	YGGCCR	2 cut(s)	535, 1205
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	442
Eco105I	TACGTA	1 cut(s)	941
Eco130I	CCWWGG	2 cut(s)	899, 925
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	1084
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	899, 925
EcoT22I	ATGCAT	1 cut(s)	1063
ErhI	CCWWGG	2 cut(s)	899, 925
Esp3I	CGTCTC	1 cut(s)	733
FaeI	CATG	4 cut(s)	171, 213, 1013, 1103
FaqI	GGGAC	3 cut(s)	301, 408, 676
FatI	CATG	4 cut(s)	167, 209, 1009, 1099
FauNDI	CATATG	1 cut(s)	991
FblI	GTMKAC	2 cut(s)	48, 357
Fnu4HI	GCNGC	2 cut(s)	960, 1036
FokI	GGATG	2 cut(s)	477, 942
Fsp4HI	GCNGC	2 cut(s)	960, 1036
FspBI	CTAG	5 cut(s)	74, 141, 468, 645, 801
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	2 cut(s)	960, 1036
HaeII	RGCGCY	1 cut(s)	598
HaeIII	GGCC	2 cut(s)	537, 1207
HapII	CCGG	4 cut(s)	197, 237, 853, 1085
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	4 cut(s)	171, 213, 1013, 1103
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HincII	GTYRAC	4 cut(s)	49, 69, 358, 1133
HindII	GTYRAC	4 cut(s)	49, 69, 358, 1133
HinfI	GANTC	7 cut(s)	81, 154, 292, 605, 641, 804, 1187
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	4 cut(s)	197, 237, 853, 1085
HphI	GGTGA	3 cut(s)	126, 460, 575
Hpy166II	GTNNAC	4 cut(s)	49, 69, 358, 1133
Hpy188I	TCNGA	9 cut(s)	86, 184, 297, 310, 325, 337, 766, 786, 1186
Hpy188III	TCNNGA	5 cut(s)	146, 508, 609, 638, 1010
Hpy8I	GTNNAC	4 cut(s)	49, 69, 358, 1133
Hpy99I	CGWCG	4 cut(s)	50, 53, 184, 232
HpyAV	CCTTC	4 cut(s)	136, 268, 445, 738
HpyCH4III	ACNGT	5 cut(s)	207, 355, 416, 674, 790
HpyCH4IV	ACGT	5 cut(s)	45, 51, 65, 940, 948
HpyCH4V	TGCA	6 cut(s)	374, 486, 814, 918, 933, 1061
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 184, 193, 766
HpyF3I	CTNAG	3 cut(s)	591, 1070, 1105
HpySE526I	ACGT	5 cut(s)	45, 51, 65, 940, 948
Hsp92II	CATG	4 cut(s)	171, 213, 1013, 1103
HspAI	GCGC	1 cut(s)	595
KflI	GGGWCCC	1 cut(s)	395
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
LmnI	GCTCC	2 cut(s)	184, 903
Lsp1109I	GCAGC	2 cut(s)	971, 1047
LweI	GCATC	6 cut(s)	77, 103, 499, 679, 920, 1070
MaeI	CTAG	5 cut(s)	74, 141, 468, 645, 801
MaeII	ACGT	5 cut(s)	45, 51, 65, 940, 948
MaeIII	GTNAC	4 cut(s)	201, 416, 668, 790
MalI	GATC	6 cut(s)	166, 334, 834, 969, 1075, 1156
MboI	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
MboII	GAAGA	6 cut(s)	101, 202, 336, 719, 731, 768
MfeI	CAATTG	1 cut(s)	421
MflI	RGATCY	2 cut(s)	332, 967
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	7 cut(s)	11, 117, 282, 302, 377, 421, 1138
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	3 cut(s)	162, 251, 664
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	1063
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	3 cut(s)	9, 62, 68
MslI	CAYNNNNRTG	2 cut(s)	208, 1008
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	4 cut(s)	197, 237, 853, 1085
MspR9I	CCNGG	2 cut(s)	1085, 1086
MunI	CAATTG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	760
MwoI	GCNNNNNNNGC	4 cut(s)	111, 184, 193, 766
NciI	CCSGG	2 cut(s)	1085, 1086
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
NlaIII	CATG	4 cut(s)	171, 213, 1013, 1103
NlaIV	GGNNCC	3 cut(s)	235, 396, 397
NmuCI	GTSAC	3 cut(s)	201, 668, 790
NsiI	ATGCAT	1 cut(s)	1063
NspI	RCATGY	1 cut(s)	1103
PaeI	GCATGC	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	1009
PaqCI	CACCTGC	1 cut(s)	436
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	6 cut(s)	81, 154, 605, 641, 804, 1187
PinAI	ACCGGT	1 cut(s)	852
PkrI	GCNGC	2 cut(s)	961, 1037
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Ppu21I	YACGTR	2 cut(s)	941, 949
PpuMI	RGGWCCY	1 cut(s)	395
PsiI	TTATAA	2 cut(s)	480, 912
Psp1406I	AACGTT	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	235, 396, 397
PspPI	GGNCC	1 cut(s)	395
PspPPI	RGGWCCY	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	332, 967
RsaI	GTAC	4 cut(s)	58, 221, 939, 1017
RsaNI	GTAC	4 cut(s)	57, 220, 938, 1016
RseI	CAYNNNNRTG	2 cut(s)	208, 1008
SalI	GTCGAC	2 cut(s)	47, 356
SaqAI	TTAA	3 cut(s)	9, 62, 68
SatI	GCNGC	2 cut(s)	960, 1036
Sau3AI	GATC	6 cut(s)	164, 332, 832, 967, 1073, 1154
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	2 cut(s)	58, 221
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	1085, 1086
SfaNI	GCATC	6 cut(s)	77, 103, 499, 679, 920, 1070
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	395
SmaI	CCCGGG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	2 cut(s)	208, 1008
SmlI	CTYRAG	1 cut(s)	1170
SmoI	CTYRAG	1 cut(s)	1170
SnaBI	TACGTA	1 cut(s)	941
SpeI	ACTAGT	1 cut(s)	73
SphI	GCATGC	1 cut(s)	1103
Sse9I	AATT	7 cut(s)	11, 117, 282, 302, 377, 421, 1138
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	5 cut(s)	74, 141, 468, 645, 801
StyD4I	CCNGG	2 cut(s)	1083, 1084
StyI	CCWWGG	2 cut(s)	899, 925
TaaI	ACNGT	5 cut(s)	207, 355, 416, 674, 790
TaiI	ACGT	5 cut(s)	48, 54, 68, 943, 951
TaqI	TCGA	5 cut(s)	48, 79, 157, 227, 357
TasI	AATT	7 cut(s)	11, 117, 282, 302, 377, 421, 1138
TatI	WGTACW	2 cut(s)	56, 219
TfiI	GAWTC	6 cut(s)	81, 154, 605, 641, 804, 1187
Tru1I	TTAA	3 cut(s)	9, 62, 68
Tru9I	TTAA	3 cut(s)	9, 62, 68
TscAI	CASTG	2 cut(s)	679, 829
TseFI	GTSAC	3 cut(s)	201, 668, 790
TseI	GCWGC	2 cut(s)	959, 1035
Tsp45I	GTSAC	3 cut(s)	201, 668, 790
TspDTI	ATGAA	3 cut(s)	336, 732, 738
TspMI	CCCGGG	1 cut(s)	1084
TspRI	CASTG	2 cut(s)	679, 829
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	1 cut(s)	1138
XceI	RCATGY	1 cut(s)	1103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmaI	CCCGGG	1 cut(s)	1084
XmiI	GTMKAC	2 cut(s)	48, 357
XspI	CTAG	5 cut(s)	74, 141, 468, 645, 801
ZrmI	AGTACT	2 cut(s)	58, 221
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.