Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001338.1

Orthogroup ID

OG0007326

Physical Location & Seq

Genomic Coordinates Reverse (-)

20998 .. 22441

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001338.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgacgcaccagcaagcactagctcaagtgacagctcaggcttcacaatcccaatcctacacttttcatatcccaaatgaacactctacttctatgacacagcttccgatctttacttccagtacaacaccaccccaggagatgccatctgaaatacccgattctggggtcactctgaaagaatcgtctgatatctcacatttggaacagagatcccaaccatcttcattgactgtcgacaagcctaatgatgacggttacaattggcggaaatatgggcagaagcaggtgaaggggagtgagtttcctagaagttattacaaatgcacgcatcccagttgtccagtcaagaaaaaggttgaacgctcggttgatggccagataactgaaatcatttacaagggtgagcataaccatcagcgtcctcaatctaagcgcccaaaggattctggaaatcaaaatggaaatgttcaggtgaatcatgacttagcttcccaagttcatggtgggaacttgaacaaatcaaaagaagggacttattcaatgtctaagcagggtcaggaatctagccaagcaatatctgggacaagtgacagtgaggaagttggagatgctgaaacaaaagtagaagaaaaagatgaagatgaacctgctgccaagagacgaaatatggaggtcaggcattcagagccagcttcttctcatcggactgtgacagagcctagaatcatagtgcagacaaccagtgaagttgatctgttagatgatggctaccggtggcgaaagtatgggcagaaagttgtcaaaggcaatccttatccaaggagctattataaatgcacattccagggatgcaatgtacgtaagcacgtagagagagcagcaacagatcctaaagccgtcataacaacatatgagggcaaacataatcatgatgtacctgcttctaaatctggcagccactacgcagccaacaacaatgcatcaaatctaagatcaggcaacccgggaactgaaaagcatgcctcagttagcaagatggatcctcaaaacaatgaccaacagcctgtagcgcgtctacgtttaaaagaagaacaaataacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043901 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1900150 GO:1900424 GO:1900425 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

368

Amino Acids

41.12

Weight (kDa)

8.18

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13960 AT1G13960 AT2G03340
fragaria_vesca	FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 FvH4_4g30640
malus_domestica	MD13G1067600.v1.1 MD16G1066500.v1.1
prunus_persica	Prupe.1G280700_v2.0.a1 Prupe.1G280700_v2.0.a1
pyrus_communis	pycom13g05940 pycom16g05790
rosa_chinensis	RchiOBHm_Chr4g0439041
rosa_laevigata	RLG00000006307
rosa_multiflora	Rmu_sc0001338.1_g000004 Rmu_sc0003226.1_g000090
rosa_roxburghii	Rroxscaffold_5G00380040
rosa_rugosa	Rorug04G0315200
rosa_samantha	Rh4AG365900 Rh4BG377200 Rh4CG391300 Rh4DG371900
rosa_wichuraiana	Rw0G007420 Rw0G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	3 cut(s)	277, 658, 949
AccI	GTMKAC	2 cut(s)	237, 1078
AccII	CGCG	1 cut(s)	1075
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	4 cut(s)	207, 884, 1037, 1050
AcoI	YGGCCR	1 cut(s)	376
AfaI	GTAC	3 cut(s)	124, 861, 939
AfiI	CCNNNNNNNGG	2 cut(s)	164, 165
AgeI	ACCGGT	1 cut(s)	774
AgsI	TTSAA	3 cut(s)	362, 517, 543
AjnI	CCWGG	2 cut(s)	135, 846
AluBI	AGCT	6 cut(s)	23, 35, 103, 491, 695, 828
AluI	AGCT	6 cut(s)	23, 35, 103, 491, 695, 828
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	4 cut(s)	207, 884, 1037, 1050
Ama87I	CYCGRG	1 cut(s)	1006
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	4 cut(s)	653, 881, 957, 968
AsiGI	ACCGGT	1 cut(s)	774
AspLEI	GCGC	2 cut(s)	438, 1075
AsuC2I	CCSGG	2 cut(s)	1007, 1008
AsuHPI	GGTGA	3 cut(s)	301, 416, 487
AvaI	CYCGRG	1 cut(s)	1006
BalI	TGGCCA	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	1042
BbvI	GCAGC	4 cut(s)	640, 893, 969, 980
BccI	CCATC	6 cut(s)	154, 229, 368, 423, 761, 1033
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	2 cut(s)	137, 848
BcnI	CCSGG	2 cut(s)	1007, 1008
BcoDI	GTCTC	1 cut(s)	655
BfaI	CTAG	4 cut(s)	20, 309, 567, 723
BfmI	CTRYAG	1 cut(s)	1068
BfoI	RGCGCY	1 cut(s)	439
BfuAI	ACCTGC	3 cut(s)	277, 658, 949
BisI	GCNGC	4 cut(s)	654, 882, 958, 969
BlsI	GCNGC	4 cut(s)	655, 883, 959, 970
Bme1390I	CCNGG	4 cut(s)	137, 848, 1007, 1008
BmeT110I	CYCGRG	1 cut(s)	1006
BmiI	GGNNCC	1 cut(s)	1044
BmrFI	CCNGG	4 cut(s)	137, 848, 1007, 1008
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	5 cut(s)	132, 340, 601, 842, 992
BmuI	ACTGGG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	2 cut(s)	1007, 1008
BsaAI	YACGTR	2 cut(s)	863, 871
BsaJI	CCNNGG	4 cut(s)	135, 821, 847, 1006
BsaWI	WCCGGW	1 cut(s)	774
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 165
Bse118I	RCCGGY	1 cut(s)	774
Bse1I	ACTGG	4 cut(s)	120, 336, 344, 744
Bse3DI	GCAATG	1 cut(s)	862
BseBI	CCWGG	2 cut(s)	137, 848
BseDI	CCNNGG	4 cut(s)	135, 821, 847, 1006
BseGI	GGATG	2 cut(s)	331, 857
BseLI	CCNNNNNNNGG	2 cut(s)	164, 165
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	2 cut(s)	50, 1041
BseNI	ACTGG	4 cut(s)	120, 336, 344, 744
BseXI	GCAGC	4 cut(s)	640, 893, 969, 980
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	1075
BshFI	GGCC	1 cut(s)	378
BshTI	ACCGGT	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	1006
BsiSI	CCGG	2 cut(s)	775, 1007
BslFI	GGGAC	2 cut(s)	547, 598
BslI	CCNNNNNNNGG	2 cut(s)	164, 165
BsmAI	GTCTC	1 cut(s)	655
BsmBI	CGTCTC	1 cut(s)	655
BsmFI	GGGAC	2 cut(s)	547, 598
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	1006
Bsp143I	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	49, 1040
BspFNI	CGCG	1 cut(s)	1075
BspHI	TCATGA	2 cut(s)	481, 931
BspLI	GGNNCC	1 cut(s)	1044
BspMI	ACCTGC	3 cut(s)	277, 658, 949
BspPI	GGATC	4 cut(s)	207, 884, 1037, 1050
BsrDI	GCAATG	1 cut(s)	862
BsrFI	RCCGGY	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	120, 336, 344, 744
BssAI	RCCGGY	1 cut(s)	774
BssECI	CCNNGG	4 cut(s)	135, 821, 847, 1006
BssMI	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
BssT1I	CCWWGG	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	137, 848
Bst4CI	ACNGT	4 cut(s)	235, 257, 596, 712
BstBAI	YACGTR	2 cut(s)	863, 871
BstC8I	GCNNGC	4 cut(s)	15, 329, 693, 1023
BstDEI	CTNAG	6 cut(s)	36, 432, 487, 549, 992, 1027
BstF5I	GGATG	2 cut(s)	331, 857
BstFNI	CGCG	1 cut(s)	1075
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	438, 1075
BstKTI	GATC	6 cut(s)	111, 215, 757, 892, 998, 1045
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	688, 1072
BstNI	CCWGG	2 cut(s)	137, 848
BstNSI	RCATGY	1 cut(s)	1025
BstSCI	CCNGG	4 cut(s)	135, 846, 1005, 1006
BstSFI	CTRYAG	1 cut(s)	1068
BstSNI	TACGTA	1 cut(s)	863
BstUI	CGCG	1 cut(s)	1075
BstV1I	GCAGC	4 cut(s)	640, 893, 969, 980
BstX2I	RGATCY	3 cut(s)	212, 889, 1042
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	3 cut(s)	212, 889, 1042
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	331, 857
BtsIMutI	CAGTG	2 cut(s)	601, 751
BveI	ACCTGC	3 cut(s)	277, 658, 949
Cac8I	GCNNGC	4 cut(s)	15, 329, 693, 1023
CciI	TCATGA	2 cut(s)	481, 931
CfoI	GCGC	2 cut(s)	438, 1075
Cfr10I	RCCGGY	1 cut(s)	774
Cfr9I	CCCGGG	1 cut(s)	1006
CseI	GACGC	3 cut(s)	13, 410, 1064
Csp6I	GTAC	3 cut(s)	123, 860, 938
CspAI	ACCGGT	1 cut(s)	774
CviAII	CATG	4 cut(s)	482, 503, 932, 1022
CviQI	GTAC	3 cut(s)	123, 860, 938
DdeI	CTNAG	6 cut(s)	36, 432, 487, 549, 992, 1027
DpnI	GATC	6 cut(s)	110, 214, 756, 891, 997, 1044
DpnII	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
DraI	TTTAAA	1 cut(s)	1086
EaeI	YGGCCR	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	283
Eco105I	TACGTA	1 cut(s)	863
Eco130I	CCWWGG	1 cut(s)	821
Eco32I	GATATC	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	1006
EcoRII	CCWGG	2 cut(s)	135, 846
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	821
EcoT22I	ATGCAT	1 cut(s)	985
ErhI	CCWWGG	1 cut(s)	821
Esp3I	CGTCTC	1 cut(s)	655
FaeI	CATG	4 cut(s)	485, 506, 935, 1025
FaqI	GGGAC	2 cut(s)	547, 598
FatI	CATG	4 cut(s)	481, 502, 931, 1021
FauNDI	CATATG	1 cut(s)	913
FblI	GTMKAC	2 cut(s)	237, 1078
Fnu4HI	GCNGC	4 cut(s)	654, 882, 958, 969
FokI	GGATG	2 cut(s)	318, 864
Fsp4HI	GCNGC	4 cut(s)	654, 882, 958, 969
FspBI	CTAG	4 cut(s)	20, 309, 567, 723
GlaI	GCGC	2 cut(s)	437, 1074
GluI	GCNGC	4 cut(s)	654, 882, 958, 969
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	2 cut(s)	775, 1007
HgaI	GACGC	3 cut(s)	13, 410, 1064
HhaI	GCGC	2 cut(s)	438, 1075
Hin1II	CATG	4 cut(s)	485, 506, 935, 1025
Hin6I	GCGC	2 cut(s)	436, 1073
HinP1I	GCGC	2 cut(s)	436, 1073
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	6 cut(s)	161, 182, 446, 478, 563, 726
HpaII	CCGG	2 cut(s)	775, 1007
HphI	GGTGA	3 cut(s)	301, 416, 487
Hpy166II	GTNNAC	2 cut(s)	238, 1079
Hpy188I	TCNGA	6 cut(s)	108, 151, 177, 190, 688, 708
Hpy188III	TCNNGA	5 cut(s)	349, 450, 482, 560, 932
Hpy8I	GTNNAC	2 cut(s)	238, 1079
HpyAV	CCTTC	2 cut(s)	286, 524
HpyCH4III	ACNGT	4 cut(s)	235, 257, 596, 712
HpyCH4IV	ACGT	3 cut(s)	862, 870, 1081
HpyCH4V	TGCA	5 cut(s)	327, 736, 840, 855, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	688, 1072
HpyF3I	CTNAG	6 cut(s)	36, 432, 487, 549, 992, 1027
HpySE526I	ACGT	3 cut(s)	862, 870, 1081
Hsp92II	CATG	4 cut(s)	485, 506, 935, 1025
HspAI	GCGC	2 cut(s)	436, 1073
Kzo9I	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
LmnI	GCTCC	1 cut(s)	825
Lsp1109I	GCAGC	4 cut(s)	640, 893, 969, 980
LweI	GCATC	5 cut(s)	132, 340, 601, 842, 992
MaeI	CTAG	4 cut(s)	20, 309, 567, 723
MaeII	ACGT	3 cut(s)	862, 870, 1081
MaeIII	GTNAC	5 cut(s)	28, 169, 257, 590, 712
MalI	GATC	6 cut(s)	110, 214, 756, 891, 997, 1044
MboI	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
MboII	GAAGA	5 cut(s)	216, 641, 653, 690, 1103
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	3 cut(s)	212, 889, 1042
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	1 cut(s)	262
MluNI	TGGCCA	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	6 cut(s)	435, 592, 667, 910, 1036, 1056
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	1085
MslI	CAYNNNNRTG	1 cut(s)	930
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	2 cut(s)	775, 1007
MspR9I	CCNGG	4 cut(s)	137, 848, 1007, 1008
MunI	CAATTG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	137, 848
MvnI	CGCG	1 cut(s)	1075
MwoI	GCNNNNNNNGC	2 cut(s)	688, 1072
NciI	CCSGG	2 cut(s)	1007, 1008
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
NlaIII	CATG	4 cut(s)	485, 506, 935, 1025
NlaIV	GGNNCC	1 cut(s)	1044
NmuCI	GTSAC	4 cut(s)	28, 169, 590, 712
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	1 cut(s)	1025
PaeI	GCATGC	1 cut(s)	1025
PagI	TCATGA	2 cut(s)	481, 931
PaqCI	CACCTGC	1 cut(s)	277
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	6 cut(s)	161, 182, 446, 478, 563, 726
PinAI	ACCGGT	1 cut(s)	774
PkrI	GCNGC	4 cut(s)	655, 883, 959, 970
Ppu21I	YACGTR	2 cut(s)	863, 871
PsiI	TTATAA	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	135, 846
PspGI	CCWGG	2 cut(s)	135, 846
PspN4I	GGNNCC	1 cut(s)	1044
PsuI	RGATCY	3 cut(s)	212, 889, 1042
RsaI	GTAC	3 cut(s)	124, 861, 939
RsaNI	GTAC	3 cut(s)	123, 860, 938
RseI	CAYNNNNRTG	1 cut(s)	930
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	1085
SatI	GCNGC	4 cut(s)	654, 882, 958, 969
Sau3AI	GATC	6 cut(s)	108, 212, 754, 889, 995, 1042
ScrFI	CCNGG	4 cut(s)	137, 848, 1007, 1008
SfaNI	GCATC	5 cut(s)	132, 340, 601, 842, 992
SfcI	CTRYAG	1 cut(s)	1068
SmaI	CCCGGG	1 cut(s)	1008
SmiMI	CAYNNNNRTG	1 cut(s)	930
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SnaBI	TACGTA	1 cut(s)	863
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	4 cut(s)	20, 309, 567, 723
StyD4I	CCNGG	4 cut(s)	135, 846, 1005, 1006
StyI	CCWWGG	1 cut(s)	821
TaaI	ACNGT	4 cut(s)	235, 257, 596, 712
TaiI	ACGT	3 cut(s)	865, 873, 1084
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	6 cut(s)	161, 182, 446, 478, 563, 726
Tru1I	TTAA	1 cut(s)	1085
Tru9I	TTAA	1 cut(s)	1085
TscAI	CASTG	2 cut(s)	601, 751
TseFI	GTSAC	4 cut(s)	28, 169, 590, 712
TseI	GCWGC	4 cut(s)	653, 881, 957, 968
Tsp45I	GTSAC	4 cut(s)	28, 169, 590, 712
TspDTI	ATGAA	6 cut(s)	56, 93, 216, 491, 654, 660
TspMI	CCCGGG	1 cut(s)	1006
TspRI	CASTG	2 cut(s)	601, 751
XceI	RCATGY	1 cut(s)	1025
XcmI	CCANNNNNNNNNTGG	2 cut(s)	503, 578
XmaI	CCCGGG	1 cut(s)	1006
XmiI	GTMKAC	2 cut(s)	237, 1078
XspI	CTAG	4 cut(s)	20, 309, 567, 723
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.