AT2G03340
WRKY Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
1014350 .. 1017222
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03340.1

Sequence Viewer

Length: 1542 bp
ATGGCGGAGAAGGAAGAAAAAGAACCATCGAAGTTAAAATCATCCACCGGAGTTTCACGGCCAACGATTTCACTACCTCCTCGACCGTTTGGTGAAATGTTTTTTAGCGGTGGCGTTGGATTTAGTCCTGGACCAATGACTCTCGTCTCAAATTTATTCTCTGATCCTGATGAGTTCAAGTCTTTCTCTCAGCTTTTAGCTGGAGCTATGGCTTCTCCGGCGGCAGCTGCTGTTGCCGCCGCTGCTGTGGTTGCTACTGCTCATCATCAGACACCTGTGAGCTCTGTCGGTGATGGCGGTGGAAGCGGTGGTGATGTTGACCCGAGGTTTAAGCAGAGTAGACCAACGGGATTGATGATAACTCAACCACCGGGGATGTTTACTGTACCGCCGGGGTTAAGTCCGGCTACTCTTTTGGATTCTCCGAGCTTCTTTGGTCTTTTTTCACCTCTTCAGGGAACATTTGGTATGACACATCAACAAGCTTTAGCACAAGTCACTGCACAAGCAGTTCAAGGCAATAATGTTCATATGCAGCAATCACAACAATCTGAATATCCTTCTTCTACACAACAACAACAACAACAACAACAACAAGCTTCATTGACTGAGATTCCATCATTTTCTTCTGCACCTAGGTCTCAGATTCGAGCCTCGGTTCAAGAAACATCGCAGGGTCAGAGAGAGACTTCGGAAATATCTGTCTTTGAGCATCGGTCACAGCCTCAAAATGCTGACAAACCAGCTGATGATGGATACAACTGGCGGAAATATGGGCAGAAGCAAGTGAAGGGGAGCGATTTTCCTCGGAGTTATTACAAATGTACGCATCCAGCTTGTCCTGTCAAGAAGAAAGTGGAGAGGTCACTCGATGGACAAGTAACGGAAATCATCTACAAGGGTCAACACAATCATGAGCTTCCTCAAAAGCGCGGTAACAATAACGGGAGTTGTAAAAGTTCTGATATTGCAAATCAGTTTCAAACAAGTAATAGCAGTCTCAACAAGAGTAAGAGGGACCAGGAAACAAGCCAAGTTACAACAACAGAGCAGATGTCTGAAGCAAGTGATAGCGAGGAGGTTGGGAATGCAGAGACTAGTGTGGGAGAAAGACATGAGGATGAGCCTGATCCCAAGCGAAGAAATACAGAAGTTCGGGTTTCAGAACCAGTTGCTTCATCGCATAGAACTGTGACAGAGCCTAGGATTATTGTCCAAACGACGAGTGAAGTTGACCTCTTAGATGATGGATATAGGTGGCGCAAGTATGGTCAGAAAGTAGTCAAAGGAAATCCTTATCCGAGGAGCTACTATAAGTGTACAACACCAGATTGCGGAGTAAGGAAACATGTAGAGAGAGCAGCAACTGACCCAAAAGCTGTTGTAACAACATATGAAGGTAAACATAACCATGATGTTCCAGCTGCTAGAACCAGCAGCCATCAGTTAAGACCAAACAATCAACACAACACCTCAACGGTTAACTTCAATCATCAACAGCCTGTTGCACGTTTAAGGCTTAAAGAAGAGCAAATCACTTGA

Protein Analysis

513

Amino Acids

56.28

Weight (kDa)

8.15

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 250 - 306 1.9e-27 WRKY DNA -binding domain
WRKY PF03106 415 - 472 2.6e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 933
AclWI GGATC 2 cut(s) 158, 1124
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 2 cut(s) 437, 1080
AfaI GTAC 3 cut(s) 387, 826, 1321
AfiI CCNNNNNNNGG 2 cut(s) 455, 1334
AflIII ACRYGT 1 cut(s) 1348
AgsI TTSAA 5 cut(s) 178, 515, 662, 983, 1489
AhlI ACTAGT 1 cut(s) 1097
AjnI CCWGG 2 cut(s) 127, 1020
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 5 cut(s) 151, 645, 680, 1004, 1088
AlwI GGATC 2 cut(s) 158, 1124
AlwNI CAGNNNCTG 2 cut(s) 230, 1367
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 7 cut(s) 224, 227, 242, 535, 1361, 1424, 1437
ApoI RAATTY 1 cut(s) 151
AspA2I CCTAGG 2 cut(s) 635, 1202
AspLEI GCGC 2 cut(s) 933, 1263
AspS9I GGNCC 2 cut(s) 131, 1018
AsuC2I CCSGG 2 cut(s) 372, 393
AsuHPI GGTGA 4 cut(s) 104, 302, 323, 438
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 2 cut(s) 131, 1018
AvrII CCTAGG 2 cut(s) 635, 1202
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 7 cut(s) 214, 229, 236, 547, 1373, 1411, 1449
BccI CCATC 7 cut(s) 34, 287, 625, 746, 866, 1241, 1449
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 129, 1022
BciVI GTATCC 1 cut(s) 749
BcnI CCSGG 2 cut(s) 372, 393
BcoDI GTCTC 5 cut(s) 151, 645, 680, 1004, 1088
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 4 cut(s) 636, 1098, 1203, 1428
BfuI GTATCC 1 cut(s) 749
BlnI CCTAGG 2 cut(s) 635, 1202
Bme1390I CCNGG 4 cut(s) 129, 372, 393, 1022
Bme18I GGWCC 2 cut(s) 131, 1018
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 131, 1018
BmiI GGNNCC 1 cut(s) 1019
BmrFI CCNGG 4 cut(s) 129, 372, 393, 1022
BmsI GCATC 2 cut(s) 721, 838
BoxI GACNNNNGTC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 372, 393
BsaI GGTCTC 1 cut(s) 645
BsaJI CCNNGG 8 cut(s) 323, 371, 392, 635, 654, 806, 1202, 1301
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 1334
Bse1I ACTGG 2 cut(s) 767, 1169
BseBI CCWGG 2 cut(s) 129, 1022
BseDI CCNNGG 8 cut(s) 323, 371, 392, 635, 654, 806, 1202, 1301
BseGI GGATG 4 cut(s) 41, 381, 829, 1126
BseLI CCNNNNNNNGG 2 cut(s) 455, 1334
BseMII CTCAG 3 cut(s) 203, 600, 656
BseNI ACTGG 2 cut(s) 767, 1169
BseRI GAGGAG 3 cut(s) 69, 1091, 1318
BseXI GCAGC 7 cut(s) 214, 229, 236, 547, 1373, 1411, 1449
BsgI GTGCAG 2 cut(s) 486, 615
Bsh1236I CGCG 1 cut(s) 933
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 5 cut(s) 48, 218, 371, 392, 404
BslFI GGGAC 1 cut(s) 1031
BslI CCNNNNNNNGG 2 cut(s) 455, 1334
BsmAI GTCTC 5 cut(s) 151, 645, 680, 1004, 1088
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 1031
BsmI GAATGC 1 cut(s) 1093
BsnI GGCC 1 cut(s) 61
Bso31I GGTCTC 1 cut(s) 645
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 284
Bsp1407I TGTACA 1 cut(s) 1319
Bsp143I GATC 2 cut(s) 163, 1129
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 3 cut(s) 202, 601, 655
BspFNI CGCG 1 cut(s) 933
BspHI TCATGA 1 cut(s) 913
BspLI GGNNCC 1 cut(s) 1019
BspPI GGATC 2 cut(s) 158, 1124
BspQI GCTCTTC 1 cut(s) 1521
BspTNI GGTCTC 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 1319
BsrI ACTGG 2 cut(s) 767, 1169
BssECI CCNNGG 8 cut(s) 323, 371, 392, 635, 654, 806, 1202, 1301
BssMI GATC 2 cut(s) 163, 1129
BssT1I CCWWGG 2 cut(s) 635, 1202
Bst2UI CCWGG 2 cut(s) 129, 1022
Bst4CI ACNGT 4 cut(s) 87, 385, 1192, 1480
Bst6I CTCTTC 2 cut(s) 456, 1521
BstAUI TGTACA 1 cut(s) 1319
BstDEI CTNAG 4 cut(s) 189, 609, 642, 1240
BstF5I GGATG 4 cut(s) 41, 381, 829, 1126
BstFNI CGCG 1 cut(s) 933
BstHHI GCGC 2 cut(s) 933, 1263
BstKTI GATC 2 cut(s) 166, 1132
BstMAI GTCTC 5 cut(s) 151, 645, 680, 1004, 1088
BstMBI GATC 2 cut(s) 163, 1129
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 7 cut(s) 218, 227, 233, 236, 242, 251, 303
BstNI CCWGG 2 cut(s) 129, 1022
BstNSI RCATGY 1 cut(s) 1352
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 4 cut(s) 127, 370, 391, 1020
BstUI CGCG 1 cut(s) 933
BstV1I GCAGC 7 cut(s) 214, 229, 236, 547, 1373, 1411, 1449
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 1 cut(s) 61
BtgZI GCGATG 2 cut(s) 654, 1164
BtsCI GGATG 4 cut(s) 41, 381, 829, 1126
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
CaiI CAGNNNCTG 2 cut(s) 230, 1367
CciI TCATGA 1 cut(s) 913
CfoI GCGC 2 cut(s) 933, 1263
Cfr13I GGNCC 2 cut(s) 131, 1018
Csp6I GTAC 3 cut(s) 386, 825, 1320
CviAII CATG 4 cut(s) 914, 1115, 1349, 1412
CviQI GTAC 3 cut(s) 386, 825, 1320
DdeI CTNAG 4 cut(s) 189, 609, 642, 1240
DpnI GATC 2 cut(s) 165, 1131
DpnII GATC 2 cut(s) 163, 1129
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 456, 1521
EarI CTCTTC 2 cut(s) 456, 1521
EciI GGCGGA 2 cut(s) 20, 781
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 2 cut(s) 635, 1202
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 131, 1018
Eco53kI GAGCTC 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 437, 1080
Eco88I CYCGRG 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 127, 1020
EcoT14I CCWWGG 2 cut(s) 635, 1202
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 2 cut(s) 635, 1202
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 4 cut(s) 917, 1118, 1352, 1415
FaqI GGGAC 1 cut(s) 1031
FatI CATG 4 cut(s) 913, 1114, 1348, 1411
FauNDI CATATG 2 cut(s) 531, 1393
FblI GTMKAC 1 cut(s) 340
FokI GGATG 4 cut(s) 28, 388, 816, 1133
FriOI GRGCYC 1 cut(s) 284
FspBI CTAG 4 cut(s) 636, 1098, 1203, 1428
GlaI GCGC 2 cut(s) 932, 1262
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 61
HapII CCGG 5 cut(s) 48, 218, 371, 392, 404
HhaI GCGC 2 cut(s) 933, 1263
Hin1II CATG 4 cut(s) 917, 1118, 1352, 1415
Hin6I GCGC 2 cut(s) 931, 1261
HinP1I GCGC 2 cut(s) 931, 1261
HincII GTYRAC 4 cut(s) 319, 905, 1234, 1483
HindII GTYRAC 4 cut(s) 319, 905, 1234, 1483
HindIII AAGCTT 2 cut(s) 483, 597
HinfI GANTC 4 cut(s) 139, 419, 613, 646
HpaI GTTAAC 1 cut(s) 1483
HpaII CCGG 5 cut(s) 48, 218, 371, 392, 404
HphI GGTGA 4 cut(s) 104, 302, 323, 438
Hpy166II GTNNAC 8 cut(s) 319, 341, 381, 905, 1234, 1320, 1403, 1483
Hpy188III TCNNGA 4 cut(s) 167, 662, 847, 914
Hpy8I GTNNAC 8 cut(s) 319, 341, 381, 905, 1234, 1320, 1403, 1483
Hpy99I CGWCG 1 cut(s) 1225
HpyAV CCTTC 4 cut(s) 4, 570, 784, 1391
HpyCH4III ACNGT 4 cut(s) 87, 385, 1192, 1480
HpyCH4IV ACGT 1 cut(s) 1510
HpyCH4V TGCA 6 cut(s) 503, 535, 632, 971, 1091, 1508
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 227, 233, 236, 242, 251, 303
HpyF3I CTNAG 4 cut(s) 189, 609, 642, 1240
HpySE526I ACGT 1 cut(s) 1510
Hsp92II CATG 4 cut(s) 917, 1118, 1352, 1415
HspAI GCGC 2 cut(s) 931, 1261
KspAI GTTAAC 1 cut(s) 1483
Kzo9I GATC 2 cut(s) 163, 1129
LguI GCTCTTC 1 cut(s) 1521
LmnI GCTCC 3 cut(s) 203, 795, 1305
Lsp1109I GCAGC 7 cut(s) 214, 229, 236, 547, 1373, 1411, 1449
LweI GCATC 2 cut(s) 721, 838
MaeI CTAG 4 cut(s) 636, 1098, 1203, 1428
MaeII ACGT 1 cut(s) 1510
MaeIII GTNAC 8 cut(s) 496, 717, 864, 880, 935, 1036, 1192, 1384
MalI GATC 2 cut(s) 165, 1131
MboI GATC 2 cut(s) 163, 1129
MboII GAAGA 7 cut(s) 26, 443, 555, 618, 862, 1152, 1538
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 1 cut(s) 151
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 97
MseI TTAA 7 cut(s) 35, 330, 398, 1448, 1482, 1514, 1521
MslI CAYNNNNRTG 3 cut(s) 912, 1119, 1410
MspA1I CMGCKG 4 cut(s) 227, 242, 746, 1424
MspI CCGG 5 cut(s) 48, 218, 371, 392, 404
MspR9I CCNGG 4 cut(s) 129, 372, 393, 1022
Mva1269I GAATGC 1 cut(s) 1093
MvaI CCWGG 2 cut(s) 129, 1022
MvnI CGCG 1 cut(s) 933
MwoI GCNNNNNNNGC 7 cut(s) 218, 227, 233, 236, 242, 251, 303
NciI CCSGG 2 cut(s) 372, 393
NdeI CATATG 2 cut(s) 531, 1393
NdeII GATC 2 cut(s) 163, 1129
NlaIII CATG 4 cut(s) 917, 1118, 1352, 1415
NlaIV GGNNCC 1 cut(s) 1019
NmuCI GTSAC 4 cut(s) 496, 717, 864, 1192
NspI RCATGY 1 cut(s) 1352
PagI TCATGA 1 cut(s) 913
PciI ACATGT 1 cut(s) 1348
PciSI GCTCTTC 1 cut(s) 1521
PctI GAATGC 1 cut(s) 1093
PfeI GAWTC 3 cut(s) 419, 613, 646
PfoI TCCNGGA 1 cut(s) 127
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 1348
PshAI GACNNNNGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 127, 1020
PspGI CCWGG 2 cut(s) 127, 1020
PspN4I GGNNCC 1 cut(s) 1019
PspPI GGNCC 2 cut(s) 131, 1018
PstNI CAGNNNCTG 2 cut(s) 230, 1367
PvuII CAGCTG 3 cut(s) 227, 746, 1424
RsaI GTAC 3 cut(s) 387, 826, 1321
RsaNI GTAC 3 cut(s) 386, 825, 1320
RseI CAYNNNNRTG 3 cut(s) 912, 1119, 1410
SacI GAGCTC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 1521
SaqAI TTAA 7 cut(s) 35, 330, 398, 1448, 1482, 1514, 1521
Sau3AI GATC 2 cut(s) 163, 1129
Sau96I GGNCC 2 cut(s) 131, 1018
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 4 cut(s) 129, 372, 393, 1022
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 2 cut(s) 721, 838
SinI GGWCC 2 cut(s) 131, 1018
SmiMI CAYNNNNRTG 3 cut(s) 912, 1119, 1410
SpeI ACTAGT 1 cut(s) 1097
Sse9I AATT 1 cut(s) 151
SspMI CTAG 4 cut(s) 636, 1098, 1203, 1428
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 4 cut(s) 127, 370, 391, 1020
StyI CCWWGG 2 cut(s) 635, 1202
TaaI ACNGT 4 cut(s) 87, 385, 1192, 1480
TaiI ACGT 1 cut(s) 1513
TaqI TCGA 4 cut(s) 29, 82, 649, 870
TaqII GACCGA 1 cut(s) 705
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 1319
TauI GCSGC 3 cut(s) 224, 239, 242
TfiI GAWTC 3 cut(s) 419, 613, 646
Tru1I TTAA 7 cut(s) 35, 330, 398, 1448, 1482, 1514, 1521
Tru9I TTAA 7 cut(s) 35, 330, 398, 1448, 1482, 1514, 1521
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 4 cut(s) 496, 717, 864, 1192
TseI GCWGC 7 cut(s) 224, 227, 242, 535, 1361, 1424, 1437
Tsp45I GTSAC 4 cut(s) 496, 717, 864, 1192
TspDTI ATGAA 4 cut(s) 518, 591, 1167, 1410
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 2 cut(s) 131, 1018
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 1352
XmaJI CCTAGG 2 cut(s) 635, 1202
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 4 cut(s) 636, 1098, 1203, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.