Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13960 AT1G13960 AT2G03340 |
| fragaria_vesca | FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 |
| malus_domestica | MD13G1067600.v1.1 MD16G1066500.v1.1 |
| prunus_persica | Prupe.1G280700_v2.0.a1 Prupe.1G280700_v2.0.a1 |
| pyrus_communis | pycom13g05940 pycom16g05790 |
| rosa_chinensis | RchiOBHm_Chr4g0439041 |
| rosa_laevigata | RLG00000006307 |
| rosa_multiflora | Rmu_sc0001338.1_g000004 Rmu_sc0003226.1_g000090 |
| rosa_roxburghii | Rroxscaffold_5G00380040 |
| rosa_rugosa | Rorug04G0315200 |
| rosa_samantha | Rh4AG365900 Rh4BG377200 Rh4CG391300 Rh4DG371900 |
| rosa_wichuraiana | Rw0G007420 Rw0G016970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 340 |
| AccII | CGCG | 1 cut(s) | 933 |
| AclWI | GGATC | 2 cut(s) | 158, 1124 |
| AcoI | YGGCCR | 1 cut(s) | 59 |
| AcsI | RAATTY | 1 cut(s) | 151 |
| AcuI | CTGAAG | 2 cut(s) | 437, 1080 |
| AfaI | GTAC | 3 cut(s) | 387, 826, 1321 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 455, 1334 |
| AflIII | ACRYGT | 1 cut(s) | 1348 |
| AgsI | TTSAA | 5 cut(s) | 178, 515, 662, 983, 1489 |
| AhlI | ACTAGT | 1 cut(s) | 1097 |
| AjnI | CCWGG | 2 cut(s) | 127, 1020 |
| Alw21I | GWGCWC | 1 cut(s) | 284 |
| Alw26I | GTCTC | 5 cut(s) | 151, 645, 680, 1004, 1088 |
| AlwI | GGATC | 2 cut(s) | 158, 1124 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 230, 1367 |
| Ama87I | CYCGRG | 1 cut(s) | 322 |
| AoxI | GGCC | 1 cut(s) | 59 |
| ApeKI | GCWGC | 7 cut(s) | 224, 227, 242, 535, 1361, 1424, 1437 |
| ApoI | RAATTY | 1 cut(s) | 151 |
| AspA2I | CCTAGG | 2 cut(s) | 635, 1202 |
| AspLEI | GCGC | 2 cut(s) | 933, 1263 |
| AspS9I | GGNCC | 2 cut(s) | 131, 1018 |
| AsuC2I | CCSGG | 2 cut(s) | 372, 393 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 302, 323, 438 |
| AvaI | CYCGRG | 1 cut(s) | 322 |
| AvaII | GGWCC | 2 cut(s) | 131, 1018 |
| AvrII | CCTAGG | 2 cut(s) | 635, 1202 |
| BanII | GRGCYC | 1 cut(s) | 284 |
| Bbv12I | GWGCWC | 1 cut(s) | 284 |
| BbvI | GCAGC | 7 cut(s) | 214, 229, 236, 547, 1373, 1411, 1449 |
| BccI | CCATC | 7 cut(s) | 34, 287, 625, 746, 866, 1241, 1449 |
| BceAI | ACGGC | 1 cut(s) | 74 |
| BciT130I | CCWGG | 2 cut(s) | 129, 1022 |
| BciVI | GTATCC | 1 cut(s) | 749 |
| BcnI | CCSGG | 2 cut(s) | 372, 393 |
| BcoDI | GTCTC | 5 cut(s) | 151, 645, 680, 1004, 1088 |
| BcuI | ACTAGT | 1 cut(s) | 1097 |
| BfaI | CTAG | 4 cut(s) | 636, 1098, 1203, 1428 |
| BfuI | GTATCC | 1 cut(s) | 749 |
| BlnI | CCTAGG | 2 cut(s) | 635, 1202 |
| Bme1390I | CCNGG | 4 cut(s) | 129, 372, 393, 1022 |
| Bme18I | GGWCC | 2 cut(s) | 131, 1018 |
| BmeT110I | CYCGRG | 1 cut(s) | 322 |
| BmgT120I | GGNCC | 2 cut(s) | 131, 1018 |
| BmiI | GGNNCC | 1 cut(s) | 1019 |
| BmrFI | CCNGG | 4 cut(s) | 129, 372, 393, 1022 |
| BmsI | GCATC | 2 cut(s) | 721, 838 |
| BoxI | GACNNNNGTC | 1 cut(s) | 143 |
| BpmI | CTGGAG | 1 cut(s) | 222 |
| BpuMI | CCSGG | 2 cut(s) | 372, 393 |
| BsaI | GGTCTC | 1 cut(s) | 645 |
| BsaJI | CCNNGG | 8 cut(s) | 323, 371, 392, 635, 654, 806, 1202, 1301 |
| BsaWI | WCCGGW | 1 cut(s) | 47 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 455, 1334 |
| Bse1I | ACTGG | 2 cut(s) | 767, 1169 |
| BseBI | CCWGG | 2 cut(s) | 129, 1022 |
| BseDI | CCNNGG | 8 cut(s) | 323, 371, 392, 635, 654, 806, 1202, 1301 |
| BseGI | GGATG | 4 cut(s) | 41, 381, 829, 1126 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 455, 1334 |
| BseMII | CTCAG | 3 cut(s) | 203, 600, 656 |
| BseNI | ACTGG | 2 cut(s) | 767, 1169 |
| BseRI | GAGGAG | 3 cut(s) | 69, 1091, 1318 |
| BseXI | GCAGC | 7 cut(s) | 214, 229, 236, 547, 1373, 1411, 1449 |
| BsgI | GTGCAG | 2 cut(s) | 486, 615 |
| Bsh1236I | CGCG | 1 cut(s) | 933 |
| Bsh1285I | CGRYCG | 1 cut(s) | 86 |
| BshFI | GGCC | 1 cut(s) | 61 |
| BsiEI | CGRYCG | 1 cut(s) | 86 |
| BsiHKAI | GWGCWC | 1 cut(s) | 284 |
| BsiHKCI | CYCGRG | 1 cut(s) | 322 |
| BsiSI | CCGG | 5 cut(s) | 48, 218, 371, 392, 404 |
| BslFI | GGGAC | 1 cut(s) | 1031 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 455, 1334 |
| BsmAI | GTCTC | 5 cut(s) | 151, 645, 680, 1004, 1088 |
| BsmBI | CGTCTC | 1 cut(s) | 151 |
| BsmFI | GGGAC | 1 cut(s) | 1031 |
| BsmI | GAATGC | 1 cut(s) | 1093 |
| BsnI | GGCC | 1 cut(s) | 61 |
| Bso31I | GGTCTC | 1 cut(s) | 645 |
| BsoBI | CYCGRG | 1 cut(s) | 322 |
| Bsp1286I | GDGCHC | 1 cut(s) | 284 |
| Bsp1407I | TGTACA | 1 cut(s) | 1319 |
| Bsp143I | GATC | 2 cut(s) | 163, 1129 |
| BspANI | GGCC | 1 cut(s) | 61 |
| BspCNI | CTCAG | 3 cut(s) | 202, 601, 655 |
| BspFNI | CGCG | 1 cut(s) | 933 |
| BspHI | TCATGA | 1 cut(s) | 913 |
| BspLI | GGNNCC | 1 cut(s) | 1019 |
| BspPI | GGATC | 2 cut(s) | 158, 1124 |
| BspQI | GCTCTTC | 1 cut(s) | 1521 |
| BspTNI | GGTCTC | 1 cut(s) | 645 |
| BsrGI | TGTACA | 1 cut(s) | 1319 |
| BsrI | ACTGG | 2 cut(s) | 767, 1169 |
| BssECI | CCNNGG | 8 cut(s) | 323, 371, 392, 635, 654, 806, 1202, 1301 |
| BssMI | GATC | 2 cut(s) | 163, 1129 |
| BssT1I | CCWWGG | 2 cut(s) | 635, 1202 |
| Bst2UI | CCWGG | 2 cut(s) | 129, 1022 |
| Bst4CI | ACNGT | 4 cut(s) | 87, 385, 1192, 1480 |
| Bst6I | CTCTTC | 2 cut(s) | 456, 1521 |
| BstAUI | TGTACA | 1 cut(s) | 1319 |
| BstDEI | CTNAG | 4 cut(s) | 189, 609, 642, 1240 |
| BstF5I | GGATG | 4 cut(s) | 41, 381, 829, 1126 |
| BstFNI | CGCG | 1 cut(s) | 933 |
| BstHHI | GCGC | 2 cut(s) | 933, 1263 |
| BstKTI | GATC | 2 cut(s) | 166, 1132 |
| BstMAI | GTCTC | 5 cut(s) | 151, 645, 680, 1004, 1088 |
| BstMBI | GATC | 2 cut(s) | 163, 1129 |
| BstMCI | CGRYCG | 1 cut(s) | 86 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 218, 227, 233, 236, 242, 251, 303 |
| BstNI | CCWGG | 2 cut(s) | 129, 1022 |
| BstNSI | RCATGY | 1 cut(s) | 1352 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 143 |
| BstSCI | CCNGG | 4 cut(s) | 127, 370, 391, 1020 |
| BstUI | CGCG | 1 cut(s) | 933 |
| BstV1I | GCAGC | 7 cut(s) | 214, 229, 236, 547, 1373, 1411, 1449 |
| BsuI | GTATCC | 1 cut(s) | 749 |
| BsuRI | GGCC | 1 cut(s) | 61 |
| BtgZI | GCGATG | 2 cut(s) | 654, 1164 |
| BtsCI | GGATG | 4 cut(s) | 41, 381, 829, 1126 |
| BtsI | GCAGTG | 1 cut(s) | 498 |
| BtsIMutI | CAGTG | 1 cut(s) | 498 |
| CaiI | CAGNNNCTG | 2 cut(s) | 230, 1367 |
| CciI | TCATGA | 1 cut(s) | 913 |
| CfoI | GCGC | 2 cut(s) | 933, 1263 |
| Cfr13I | GGNCC | 2 cut(s) | 131, 1018 |
| Csp6I | GTAC | 3 cut(s) | 386, 825, 1320 |
| CviAII | CATG | 4 cut(s) | 914, 1115, 1349, 1412 |
| CviQI | GTAC | 3 cut(s) | 386, 825, 1320 |
| DdeI | CTNAG | 4 cut(s) | 189, 609, 642, 1240 |
| DpnI | GATC | 2 cut(s) | 165, 1131 |
| DpnII | GATC | 2 cut(s) | 163, 1129 |
| EaeI | YGGCCR | 1 cut(s) | 59 |
| Eam1104I | CTCTTC | 2 cut(s) | 456, 1521 |
| EarI | CTCTTC | 2 cut(s) | 456, 1521 |
| EciI | GGCGGA | 2 cut(s) | 20, 781 |
| Ecl136II | GAGCTC | 1 cut(s) | 282 |
| Eco130I | CCWWGG | 2 cut(s) | 635, 1202 |
| Eco24I | GRGCYC | 1 cut(s) | 284 |
| Eco31I | GGTCTC | 1 cut(s) | 645 |
| Eco47I | GGWCC | 2 cut(s) | 131, 1018 |
| Eco53kI | GAGCTC | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 2 cut(s) | 437, 1080 |
| Eco88I | CYCGRG | 1 cut(s) | 322 |
| EcoICRI | GAGCTC | 1 cut(s) | 282 |
| EcoRII | CCWGG | 2 cut(s) | 127, 1020 |
| EcoT14I | CCWWGG | 2 cut(s) | 635, 1202 |
| EcoT38I | GRGCYC | 1 cut(s) | 284 |
| ErhI | CCWWGG | 2 cut(s) | 635, 1202 |
| Esp3I | CGTCTC | 1 cut(s) | 151 |
| FaeI | CATG | 4 cut(s) | 917, 1118, 1352, 1415 |
| FaqI | GGGAC | 1 cut(s) | 1031 |
| FatI | CATG | 4 cut(s) | 913, 1114, 1348, 1411 |
| FauNDI | CATATG | 2 cut(s) | 531, 1393 |
| FblI | GTMKAC | 1 cut(s) | 340 |
| FokI | GGATG | 4 cut(s) | 28, 388, 816, 1133 |
| FriOI | GRGCYC | 1 cut(s) | 284 |
| FspBI | CTAG | 4 cut(s) | 636, 1098, 1203, 1428 |
| GlaI | GCGC | 2 cut(s) | 932, 1262 |
| GsuI | CTGGAG | 1 cut(s) | 222 |
| HaeIII | GGCC | 1 cut(s) | 61 |
| HapII | CCGG | 5 cut(s) | 48, 218, 371, 392, 404 |
| HhaI | GCGC | 2 cut(s) | 933, 1263 |
| Hin1II | CATG | 4 cut(s) | 917, 1118, 1352, 1415 |
| Hin6I | GCGC | 2 cut(s) | 931, 1261 |
| HinP1I | GCGC | 2 cut(s) | 931, 1261 |
| HincII | GTYRAC | 4 cut(s) | 319, 905, 1234, 1483 |
| HindII | GTYRAC | 4 cut(s) | 319, 905, 1234, 1483 |
| HindIII | AAGCTT | 2 cut(s) | 483, 597 |
| HinfI | GANTC | 4 cut(s) | 139, 419, 613, 646 |
| HpaI | GTTAAC | 1 cut(s) | 1483 |
| HpaII | CCGG | 5 cut(s) | 48, 218, 371, 392, 404 |
| HphI | GGTGA | 4 cut(s) | 104, 302, 323, 438 |
| Hpy166II | GTNNAC | 8 cut(s) | 319, 341, 381, 905, 1234, 1320, 1403, 1483 |
| Hpy188III | TCNNGA | 4 cut(s) | 167, 662, 847, 914 |
| Hpy8I | GTNNAC | 8 cut(s) | 319, 341, 381, 905, 1234, 1320, 1403, 1483 |
| Hpy99I | CGWCG | 1 cut(s) | 1225 |
| HpyAV | CCTTC | 4 cut(s) | 4, 570, 784, 1391 |
| HpyCH4III | ACNGT | 4 cut(s) | 87, 385, 1192, 1480 |
| HpyCH4IV | ACGT | 1 cut(s) | 1510 |
| HpyCH4V | TGCA | 6 cut(s) | 503, 535, 632, 971, 1091, 1508 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 218, 227, 233, 236, 242, 251, 303 |
| HpyF3I | CTNAG | 4 cut(s) | 189, 609, 642, 1240 |
| HpySE526I | ACGT | 1 cut(s) | 1510 |
| Hsp92II | CATG | 4 cut(s) | 917, 1118, 1352, 1415 |
| HspAI | GCGC | 2 cut(s) | 931, 1261 |
| KspAI | GTTAAC | 1 cut(s) | 1483 |
| Kzo9I | GATC | 2 cut(s) | 163, 1129 |
| LguI | GCTCTTC | 1 cut(s) | 1521 |
| LmnI | GCTCC | 3 cut(s) | 203, 795, 1305 |
| Lsp1109I | GCAGC | 7 cut(s) | 214, 229, 236, 547, 1373, 1411, 1449 |
| LweI | GCATC | 2 cut(s) | 721, 838 |
| MaeI | CTAG | 4 cut(s) | 636, 1098, 1203, 1428 |
| MaeII | ACGT | 1 cut(s) | 1510 |
| MaeIII | GTNAC | 8 cut(s) | 496, 717, 864, 880, 935, 1036, 1192, 1384 |
| MalI | GATC | 2 cut(s) | 165, 1131 |
| MboI | GATC | 2 cut(s) | 163, 1129 |
| MboII | GAAGA | 7 cut(s) | 26, 443, 555, 618, 862, 1152, 1538 |
| MhlI | GDGCHC | 1 cut(s) | 284 |
| MluCI | AATT | 1 cut(s) | 151 |
| MlyI | GAGTC | 1 cut(s) | 133 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MseI | TTAA | 7 cut(s) | 35, 330, 398, 1448, 1482, 1514, 1521 |
| MslI | CAYNNNNRTG | 3 cut(s) | 912, 1119, 1410 |
| MspA1I | CMGCKG | 4 cut(s) | 227, 242, 746, 1424 |
| MspI | CCGG | 5 cut(s) | 48, 218, 371, 392, 404 |
| MspR9I | CCNGG | 4 cut(s) | 129, 372, 393, 1022 |
| Mva1269I | GAATGC | 1 cut(s) | 1093 |
| MvaI | CCWGG | 2 cut(s) | 129, 1022 |
| MvnI | CGCG | 1 cut(s) | 933 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 218, 227, 233, 236, 242, 251, 303 |
| NciI | CCSGG | 2 cut(s) | 372, 393 |
| NdeI | CATATG | 2 cut(s) | 531, 1393 |
| NdeII | GATC | 2 cut(s) | 163, 1129 |
| NlaIII | CATG | 4 cut(s) | 917, 1118, 1352, 1415 |
| NlaIV | GGNNCC | 1 cut(s) | 1019 |
| NmuCI | GTSAC | 4 cut(s) | 496, 717, 864, 1192 |
| NspI | RCATGY | 1 cut(s) | 1352 |
| PagI | TCATGA | 1 cut(s) | 913 |
| PciI | ACATGT | 1 cut(s) | 1348 |
| PciSI | GCTCTTC | 1 cut(s) | 1521 |
| PctI | GAATGC | 1 cut(s) | 1093 |
| PfeI | GAWTC | 3 cut(s) | 419, 613, 646 |
| PfoI | TCCNGGA | 1 cut(s) | 127 |
| PleI | GAGTC | 1 cut(s) | 133 |
| PpsI | GAGTC | 1 cut(s) | 133 |
| PscI | ACATGT | 1 cut(s) | 1348 |
| PshAI | GACNNNNGTC | 1 cut(s) | 143 |
| Psp124BI | GAGCTC | 1 cut(s) | 284 |
| Psp6I | CCWGG | 2 cut(s) | 127, 1020 |
| PspGI | CCWGG | 2 cut(s) | 127, 1020 |
| PspN4I | GGNNCC | 1 cut(s) | 1019 |
| PspPI | GGNCC | 2 cut(s) | 131, 1018 |
| PstNI | CAGNNNCTG | 2 cut(s) | 230, 1367 |
| PvuII | CAGCTG | 3 cut(s) | 227, 746, 1424 |
| RsaI | GTAC | 3 cut(s) | 387, 826, 1321 |
| RsaNI | GTAC | 3 cut(s) | 386, 825, 1320 |
| RseI | CAYNNNNRTG | 3 cut(s) | 912, 1119, 1410 |
| SacI | GAGCTC | 1 cut(s) | 284 |
| SapI | GCTCTTC | 1 cut(s) | 1521 |
| SaqAI | TTAA | 7 cut(s) | 35, 330, 398, 1448, 1482, 1514, 1521 |
| Sau3AI | GATC | 2 cut(s) | 163, 1129 |
| Sau96I | GGNCC | 2 cut(s) | 131, 1018 |
| SchI | GAGTC | 1 cut(s) | 133 |
| ScrFI | CCNGG | 4 cut(s) | 129, 372, 393, 1022 |
| SduI | GDGCHC | 1 cut(s) | 284 |
| SfaNI | GCATC | 2 cut(s) | 721, 838 |
| SinI | GGWCC | 2 cut(s) | 131, 1018 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 912, 1119, 1410 |
| SpeI | ACTAGT | 1 cut(s) | 1097 |
| Sse9I | AATT | 1 cut(s) | 151 |
| SspMI | CTAG | 4 cut(s) | 636, 1098, 1203, 1428 |
| SstI | GAGCTC | 1 cut(s) | 284 |
| StyD4I | CCNGG | 4 cut(s) | 127, 370, 391, 1020 |
| StyI | CCWWGG | 2 cut(s) | 635, 1202 |
| TaaI | ACNGT | 4 cut(s) | 87, 385, 1192, 1480 |
| TaiI | ACGT | 1 cut(s) | 1513 |
| TaqI | TCGA | 4 cut(s) | 29, 82, 649, 870 |
| TaqII | GACCGA | 1 cut(s) | 705 |
| TasI | AATT | 1 cut(s) | 151 |
| TatI | WGTACW | 1 cut(s) | 1319 |
| TauI | GCSGC | 3 cut(s) | 224, 239, 242 |
| TfiI | GAWTC | 3 cut(s) | 419, 613, 646 |
| Tru1I | TTAA | 7 cut(s) | 35, 330, 398, 1448, 1482, 1514, 1521 |
| Tru9I | TTAA | 7 cut(s) | 35, 330, 398, 1448, 1482, 1514, 1521 |
| TscAI | CASTG | 1 cut(s) | 505 |
| TseFI | GTSAC | 4 cut(s) | 496, 717, 864, 1192 |
| TseI | GCWGC | 7 cut(s) | 224, 227, 242, 535, 1361, 1424, 1437 |
| Tsp45I | GTSAC | 4 cut(s) | 496, 717, 864, 1192 |
| TspDTI | ATGAA | 4 cut(s) | 518, 591, 1167, 1410 |
| TspGWI | ACGGA | 1 cut(s) | 899 |
| TspRI | CASTG | 1 cut(s) | 505 |
| VpaK11BI | GGWCC | 2 cut(s) | 131, 1018 |
| XapI | RAATTY | 1 cut(s) | 151 |
| XceI | RCATGY | 1 cut(s) | 1352 |
| XmaJI | CCTAGG | 2 cut(s) | 635, 1202 |
| XmiI | GTMKAC | 1 cut(s) | 340 |
| XspI | CTAG | 4 cut(s) | 636, 1098, 1203, 1428 |