WRKY transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13960 AT1G13960 AT2G03340 |
| fragaria_vesca | FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 FvH4_4g30640 |
| malus_domestica | MD13G1067600.v1.1 MD16G1066500.v1.1 |
| prunus_persica | Prupe.1G280700_v2.0.a1 Prupe.1G280700_v2.0.a1 |
| pyrus_communis | pycom13g05940 pycom16g05790 |
| rosa_chinensis | RchiOBHm_Chr4g0439041 |
| rosa_laevigata | RLG00000006307 |
| rosa_multiflora | Rmu_sc0001338.1_g000004 Rmu_sc0003226.1_g000090 |
| rosa_roxburghii | Rroxscaffold_5G00380040 |
| rosa_rugosa | Rorug04G0315200 |
| rosa_samantha | Rh4AG365900 Rh4BG377200 Rh4CG391300 Rh4DG371900 |
| rosa_wichuraiana | Rw0G007420 Rw0G016970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 748 |
| Acc36I | ACCTGC | 1 cut(s) | 748 |
| AccB1I | GGYRCC | 1 cut(s) | 152 |
| AccII | CGCG | 3 cut(s) | 94, 118, 1279 |
| AclWI | GGATC | 3 cut(s) | 678, 1340, 1497 |
| AcoI | YGGCCR | 1 cut(s) | 282 |
| AcuI | CTGAAG | 1 cut(s) | 169 |
| AcyI | GRCGYC | 1 cut(s) | 153 |
| AfaI | GTAC | 1 cut(s) | 1395 |
| AfeI | AGCGCT | 1 cut(s) | 836 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 162, 173, 351, 397, 398, 437, 475 |
| AgsI | TTSAA | 5 cut(s) | 61, 142, 358, 597, 807 |
| AhlI | ACTAGT | 1 cut(s) | 1046 |
| AjnI | CCWGG | 5 cut(s) | 190, 284, 292, 430, 606 |
| Alw21I | GWGCWC | 1 cut(s) | 882 |
| Alw26I | GTCTC | 5 cut(s) | 125, 214, 279, 399, 1114 |
| AlwI | GGATC | 3 cut(s) | 678, 1340, 1497 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1469 |
| Aor51HI | AGCGCT | 1 cut(s) | 836 |
| AoxI | GGCC | 7 cut(s) | 28, 164, 175, 194, 282, 287, 465 |
| ApaI | GGGCCC | 1 cut(s) | 32 |
| ApeKI | GCWGC | 7 cut(s) | 19, 68, 256, 491, 626, 1413, 1424 |
| AspLEI | GCGC | 6 cut(s) | 96, 120, 155, 553, 837, 1239 |
| AspS9I | GGNCC | 7 cut(s) | 28, 29, 164, 194, 388, 440, 466 |
| AsuC2I | CCSGG | 4 cut(s) | 27, 168, 399, 417 |
| AsuHPI | GGTGA | 4 cut(s) | 45, 97, 772, 887 |
| AvaII | GGWCC | 2 cut(s) | 388, 440 |
| BaeGI | GKGCMC | 1 cut(s) | 32 |
| BanI | GGYRCC | 1 cut(s) | 152 |
| BanII | GRGCYC | 2 cut(s) | 32, 423 |
| BbsI | GAAGAC | 1 cut(s) | 687 |
| Bbv12I | GWGCWC | 1 cut(s) | 882 |
| BbvCI | CCTCAGC | 1 cut(s) | 303 |
| BbvI | GCAGC | 7 cut(s) | 31, 55, 243, 478, 638, 1425, 1436 |
| BccI | CCATC | 5 cut(s) | 625, 719, 839, 1217, 1480 |
| BceAI | ACGGC | 2 cut(s) | 244, 346 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 109, 143 |
| BciT130I | CCWGG | 5 cut(s) | 192, 286, 294, 432, 608 |
| BciVI | GTATCC | 1 cut(s) | 722 |
| BclI | TGATCA | 2 cut(s) | 676, 1030 |
| BcnI | CCSGG | 4 cut(s) | 27, 168, 399, 417 |
| BcoDI | GTCTC | 5 cut(s) | 125, 214, 279, 399, 1114 |
| BcuI | ACTAGT | 1 cut(s) | 1046 |
| BfaI | CTAG | 4 cut(s) | 470, 1014, 1047, 1179 |
| BfmI | CTRYAG | 2 cut(s) | 1228, 1515 |
| BfoI | RGCGCY | 3 cut(s) | 156, 554, 838 |
| BfuAI | ACCTGC | 1 cut(s) | 748 |
| BfuI | GTATCC | 1 cut(s) | 722 |
| Bme1390I | CCNGG | 9 cut(s) | 27, 168, 192, 286, 294, 399, 417, 432, 608 |
| Bme18I | GGWCC | 2 cut(s) | 388, 440 |
| BmgT120I | GGNCC | 7 cut(s) | 28, 29, 164, 194, 388, 440, 466 |
| BmiI | GGNNCC | 6 cut(s) | 30, 154, 268, 390, 441, 442 |
| BmrFI | CCNGG | 9 cut(s) | 27, 168, 192, 286, 294, 399, 417, 432, 608 |
| BmsI | GCATC | 2 cut(s) | 603, 1060 |
| BoxI | GACNNNNGTC | 1 cut(s) | 206 |
| BpiI | GAAGAC | 1 cut(s) | 687 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1322, 1354 |
| BpmI | CTGGAG | 2 cut(s) | 196, 642 |
| Bpu10I | CCTNAGC | 2 cut(s) | 303, 486 |
| BpuMI | CCSGG | 4 cut(s) | 27, 168, 399, 417 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1101 |
| BsaHI | GRCGYC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 6 cut(s) | 178, 190, 191, 416, 606, 1277 |
| BsaWI | WCCGGW | 1 cut(s) | 351 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 97, 127, 305, 326, 335, 356 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 162, 173, 351, 397, 398, 437, 475 |
| Bse1I | ACTGG | 2 cut(s) | 1200, 1414 |
| Bse3DI | GCAATG | 1 cut(s) | 1318 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1101 |
| BseBI | CCWGG | 5 cut(s) | 192, 286, 294, 432, 608 |
| BseDI | CCNNGG | 6 cut(s) | 178, 190, 191, 416, 606, 1277 |
| BseJI | GATNNNNATC | 1 cut(s) | 1101 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 162, 173, 351, 397, 398, 437, 475 |
| BseMI | GCAATG | 1 cut(s) | 1318 |
| BseMII | CTCAG | 6 cut(s) | 266, 317, 500, 849, 911, 1461 |
| BseNI | ACTGG | 2 cut(s) | 1200, 1414 |
| BseRI | GAGGAG | 5 cut(s) | 63, 66, 69, 72, 75 |
| BseSI | GKGCMC | 1 cut(s) | 32 |
| BseXI | GCAGC | 7 cut(s) | 31, 55, 243, 478, 638, 1425, 1436 |
| BsgI | GTGCAG | 2 cut(s) | 477, 1211 |
| Bsh1236I | CGCG | 3 cut(s) | 94, 118, 1279 |
| BshFI | GGCC | 7 cut(s) | 30, 166, 177, 196, 284, 289, 467 |
| BshNI | GGYRCC | 1 cut(s) | 152 |
| BsiHKAI | GWGCWC | 1 cut(s) | 882 |
| BsiSI | CCGG | 7 cut(s) | 26, 147, 167, 278, 352, 398, 416 |
| BslFI | GGGAC | 3 cut(s) | 374, 453, 1057 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 162, 173, 351, 397, 398, 437, 475 |
| BsmAI | GTCTC | 5 cut(s) | 125, 214, 279, 399, 1114 |
| BsmBI | CGTCTC | 4 cut(s) | 125, 214, 399, 1114 |
| BsmFI | GGGAC | 3 cut(s) | 374, 453, 1057 |
| BsmI | GAATGC | 1 cut(s) | 802 |
| BsnI | GGCC | 7 cut(s) | 30, 166, 177, 196, 284, 289, 467 |
| Bsp120I | GGGCCC | 1 cut(s) | 28 |
| Bsp1286I | GDGCHC | 3 cut(s) | 32, 423, 882 |
| Bsp143I | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| BspANI | GGCC | 7 cut(s) | 30, 166, 177, 196, 284, 289, 467 |
| BspCNI | CTCAG | 6 cut(s) | 265, 316, 499, 850, 910, 1462 |
| BspFNI | CGCG | 3 cut(s) | 94, 118, 1279 |
| BspHI | TCATGA | 1 cut(s) | 1387 |
| BspLI | GGNNCC | 6 cut(s) | 30, 154, 268, 390, 441, 442 |
| BspMI | ACCTGC | 1 cut(s) | 748 |
| BspPI | GGATC | 3 cut(s) | 678, 1340, 1497 |
| BspQI | GCTCTTC | 2 cut(s) | 143, 428 |
| BspT107I | GGYRCC | 1 cut(s) | 152 |
| BsrDI | GCAATG | 1 cut(s) | 1318 |
| BsrI | ACTGG | 2 cut(s) | 1200, 1414 |
| BssECI | CCNNGG | 6 cut(s) | 178, 190, 191, 416, 606, 1277 |
| BssMI | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| BssNI | GRCGYC | 1 cut(s) | 153 |
| Bst2UI | CCWGG | 5 cut(s) | 192, 286, 294, 432, 608 |
| Bst4CI | ACNGT | 4 cut(s) | 372, 693, 1055, 1168 |
| Bst6I | CTCTTC | 3 cut(s) | 143, 428, 508 |
| BstACI | GRCGYC | 1 cut(s) | 153 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1460 |
| BstC8I | GCNNGC | 8 cut(s) | 261, 404, 465, 555, 800, 909, 1149, 1309 |
| BstDSI | CCRYGG | 1 cut(s) | 1277 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 473 |
| BstFNI | CGCG | 3 cut(s) | 94, 118, 1279 |
| BstH2I | RGCGCY | 3 cut(s) | 156, 554, 838 |
| BstHHI | GCGC | 6 cut(s) | 96, 120, 155, 553, 837, 1239 |
| BstKTI | GATC | 8 cut(s) | 105, 679, 686, 1033, 1105, 1213, 1348, 1492 |
| BstMAI | GTCTC | 5 cut(s) | 125, 214, 279, 399, 1114 |
| BstMBI | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 202, 237, 427, 491, 1148, 1460 |
| BstNI | CCWGG | 5 cut(s) | 192, 286, 294, 432, 608 |
| BstNSI | RCATGY | 1 cut(s) | 1328 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 206 |
| BstSCI | CCNGG | 9 cut(s) | 25, 166, 190, 284, 292, 397, 415, 430, 606 |
| BstSFI | CTRYAG | 2 cut(s) | 1228, 1515 |
| BstSLI | GKGCMC | 1 cut(s) | 32 |
| BstUI | CGCG | 3 cut(s) | 94, 118, 1279 |
| BstV1I | GCAGC | 7 cut(s) | 31, 55, 243, 478, 638, 1425, 1436 |
| BstV2I | GAAGAC | 1 cut(s) | 687 |
| BstX2I | RGATCY | 3 cut(s) | 683, 1345, 1489 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 974 |
| BstYI | RGATCY | 3 cut(s) | 683, 1345, 1489 |
| BsuI | GTATCC | 1 cut(s) | 722 |
| BsuRI | GGCC | 7 cut(s) | 30, 166, 177, 196, 284, 289, 467 |
| BtgI | CCRYGG | 1 cut(s) | 1277 |
| BtsI | GCAGTG | 1 cut(s) | 775 |
| BtsIMutI | CAGTG | 3 cut(s) | 775, 1060, 1207 |
| BveI | ACCTGC | 1 cut(s) | 748 |
| Cac8I | GCNNGC | 8 cut(s) | 261, 404, 465, 555, 800, 909, 1149, 1309 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1469 |
| CciI | TCATGA | 1 cut(s) | 1387 |
| CfoI | GCGC | 6 cut(s) | 96, 120, 155, 553, 837, 1239 |
| Cfr13I | GGNCC | 7 cut(s) | 28, 29, 164, 194, 388, 440, 466 |
| Cfr42I | CCGCGG | 1 cut(s) | 1280 |
| CseI | GACGC | 2 cut(s) | 142, 211 |
| Csp6I | GTAC | 1 cut(s) | 1394 |
| CviAII | CATG | 7 cut(s) | 271, 887, 974, 1028, 1325, 1388, 1551 |
| CviQI | GTAC | 1 cut(s) | 1394 |
| DinI | GGCGCC | 1 cut(s) | 154 |
| DpnI | GATC | 8 cut(s) | 104, 678, 685, 1032, 1104, 1212, 1347, 1491 |
| DpnII | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| DraI | TTTAAA | 1 cut(s) | 648 |
| EaeI | YGGCCR | 1 cut(s) | 282 |
| Eam1104I | CTCTTC | 3 cut(s) | 143, 428, 508 |
| EarI | CTCTTC | 3 cut(s) | 143, 428, 508 |
| EciI | GGCGGA | 3 cut(s) | 78, 313, 754 |
| Eco24I | GRGCYC | 2 cut(s) | 32, 423 |
| Eco47I | GGWCC | 2 cut(s) | 388, 440 |
| Eco47III | AGCGCT | 1 cut(s) | 836 |
| Eco57I | CTGAAG | 1 cut(s) | 169 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 473 |
| EcoO109I | RGGNCCY | 3 cut(s) | 194, 440, 466 |
| EcoRII | CCWGG | 5 cut(s) | 190, 284, 292, 430, 606 |
| EcoT38I | GRGCYC | 2 cut(s) | 32, 423 |
| EgeI | GGCGCC | 1 cut(s) | 154 |
| EheI | GGCGCC | 1 cut(s) | 154 |
| Esp3I | CGTCTC | 4 cut(s) | 125, 214, 399, 1114 |
| FaeI | CATG | 7 cut(s) | 274, 890, 977, 1031, 1328, 1391, 1554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1197, 1229 |
| FaqI | GGGAC | 3 cut(s) | 374, 453, 1057 |
| FatI | CATG | 7 cut(s) | 270, 886, 973, 1027, 1324, 1387, 1550 |
| FauI | CCCGC | 1 cut(s) | 562 |
| FbaI | TGATCA | 2 cut(s) | 676, 1030 |
| FriOI | GRGCYC | 2 cut(s) | 32, 423 |
| FspBI | CTAG | 4 cut(s) | 470, 1014, 1047, 1179 |
| GlaI | GCGC | 6 cut(s) | 95, 119, 154, 552, 836, 1238 |
| GsuI | CTGGAG | 2 cut(s) | 196, 642 |
| HaeII | RGCGCY | 3 cut(s) | 156, 554, 838 |
| HaeIII | GGCC | 7 cut(s) | 30, 166, 177, 196, 284, 289, 467 |
| HapII | CCGG | 7 cut(s) | 26, 147, 167, 278, 352, 398, 416 |
| HgaI | GACGC | 2 cut(s) | 142, 211 |
| HhaI | GCGC | 6 cut(s) | 96, 120, 155, 553, 837, 1239 |
| Hin1I | GRCGYC | 1 cut(s) | 153 |
| Hin1II | CATG | 7 cut(s) | 274, 890, 977, 1031, 1328, 1391, 1554 |
| Hin6I | GCGC | 6 cut(s) | 94, 118, 153, 551, 835, 1237 |
| HinP1I | GCGC | 6 cut(s) | 94, 118, 153, 551, 835, 1237 |
| HinfI | GANTC | 8 cut(s) | 410, 593, 632, 653, 917, 949, 1010, 1182 |
| HpaII | CCGG | 7 cut(s) | 26, 147, 167, 278, 352, 398, 416 |
| HphI | GGTGA | 4 cut(s) | 45, 97, 772, 887 |
| Hpy166II | GTNNAC | 1 cut(s) | 1526 |
| Hpy188I | TCNGA | 8 cut(s) | 226, 346, 592, 661, 676, 681, 930, 1164 |
| Hpy188III | TCNNGA | 6 cut(s) | 130, 621, 921, 953, 1007, 1388 |
| Hpy8I | GTNNAC | 1 cut(s) | 1526 |
| Hpy99I | CGWCG | 4 cut(s) | 230, 332, 338, 376 |
| HpyAV | CCTTC | 5 cut(s) | 48, 256, 757, 820, 994 |
| HpyCH4III | ACNGT | 4 cut(s) | 372, 693, 1055, 1168 |
| HpyCH4IV | ACGT | 4 cut(s) | 892, 1298, 1367, 1522 |
| HpyCH4V | TGCA | 8 cut(s) | 240, 494, 798, 911, 1192, 1296, 1311, 1463 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 202, 237, 427, 491, 1148, 1460 |
| HpySE526I | ACGT | 4 cut(s) | 892, 1298, 1367, 1522 |
| Hsp92I | GRCGYC | 1 cut(s) | 153 |
| Hsp92II | CATG | 7 cut(s) | 274, 890, 977, 1031, 1328, 1391, 1554 |
| HspAI | GCGC | 6 cut(s) | 94, 118, 153, 551, 835, 1237 |
| KasI | GGCGCC | 1 cut(s) | 152 |
| KflI | GGGWCCC | 1 cut(s) | 440 |
| Ksp22I | TGATCA | 2 cut(s) | 676, 1030 |
| KspI | CCGCGG | 1 cut(s) | 1280 |
| Kzo9I | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| LguI | GCTCTTC | 2 cut(s) | 143, 428 |
| LmnI | GCTCC | 5 cut(s) | 76, 266, 326, 623, 1281 |
| Lsp1109I | GCAGC | 7 cut(s) | 31, 55, 243, 478, 638, 1425, 1436 |
| LweI | GCATC | 2 cut(s) | 603, 1060 |
| MaeI | CTAG | 4 cut(s) | 470, 1014, 1047, 1179 |
| MaeII | ACGT | 4 cut(s) | 892, 1298, 1367, 1522 |
| MaeIII | GTNAC | 4 cut(s) | 51, 478, 1049, 1168 |
| MalI | GATC | 8 cut(s) | 104, 678, 685, 1032, 1104, 1212, 1347, 1491 |
| MboI | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| MfeI | CAATTG | 2 cut(s) | 733, 840 |
| MflI | RGATCY | 3 cut(s) | 683, 1345, 1489 |
| MhlI | GDGCHC | 3 cut(s) | 32, 423, 882 |
| MluCI | AATT | 3 cut(s) | 733, 808, 840 |
| Mly113I | GGCGCC | 1 cut(s) | 153 |
| MlyI | GAGTC | 2 cut(s) | 404, 626 |
| MmeI | TCCRAC | 1 cut(s) | 249 |
| MseI | TTAA | 5 cut(s) | 647, 819, 1442, 1479, 1532 |
| MslI | CAYNNNNRTG | 2 cut(s) | 885, 1386 |
| MspA1I | CMGCKG | 4 cut(s) | 68, 256, 629, 1279 |
| MspI | CCGG | 7 cut(s) | 26, 147, 167, 278, 352, 398, 416 |
| MspR9I | CCNGG | 9 cut(s) | 27, 168, 192, 286, 294, 399, 417, 432, 608 |
| MunI | CAATTG | 2 cut(s) | 733, 840 |
| Mva1269I | GAATGC | 1 cut(s) | 802 |
| MvaI | CCWGG | 5 cut(s) | 192, 286, 294, 432, 608 |
| MvnI | CGCG | 3 cut(s) | 94, 118, 1279 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 202, 237, 427, 491, 1148, 1460 |
| NarI | GGCGCC | 1 cut(s) | 153 |
| NciI | CCSGG | 4 cut(s) | 27, 168, 399, 417 |
| NdeII | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| NlaIII | CATG | 7 cut(s) | 274, 890, 977, 1031, 1328, 1391, 1554 |
| NlaIV | GGNNCC | 6 cut(s) | 30, 154, 268, 390, 441, 442 |
| NmeAIII | GCCGAG | 1 cut(s) | 159 |
| NmuCI | GTSAC | 4 cut(s) | 51, 478, 1049, 1168 |
| NspI | RCATGY | 1 cut(s) | 1328 |
| PagI | TCATGA | 1 cut(s) | 1387 |
| PaqCI | CACCTGC | 1 cut(s) | 748 |
| PasI | CCCWGGG | 1 cut(s) | 191 |
| PciSI | GCTCTTC | 2 cut(s) | 143, 428 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 342 |
| PctI | GAATGC | 1 cut(s) | 802 |
| PfeI | GAWTC | 6 cut(s) | 593, 653, 917, 949, 1010, 1182 |
| PleI | GAGTC | 2 cut(s) | 404, 626 |
| PluTI | GGCGCC | 1 cut(s) | 156 |
| PpsI | GAGTC | 2 cut(s) | 404, 626 |
| PpuMI | RGGWCCY | 1 cut(s) | 440 |
| PshAI | GACNNNNGTC | 1 cut(s) | 206 |
| Psp5II | RGGWCCY | 1 cut(s) | 440 |
| Psp6I | CCWGG | 5 cut(s) | 190, 284, 292, 430, 606 |
| PspGI | CCWGG | 5 cut(s) | 190, 284, 292, 430, 606 |
| PspN4I | GGNNCC | 6 cut(s) | 30, 154, 268, 390, 441, 442 |
| PspOMI | GGGCCC | 1 cut(s) | 28 |
| PspPI | GGNCC | 7 cut(s) | 28, 29, 164, 194, 388, 440, 466 |
| PspPPI | RGGWCCY | 1 cut(s) | 440 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1469 |
| PsuI | RGATCY | 3 cut(s) | 683, 1345, 1489 |
| PvuII | CAGCTG | 3 cut(s) | 68, 256, 629 |
| RsaI | GTAC | 1 cut(s) | 1395 |
| RsaNI | GTAC | 1 cut(s) | 1394 |
| RseI | CAYNNNNRTG | 2 cut(s) | 885, 1386 |
| SacII | CCGCGG | 1 cut(s) | 1280 |
| SapI | GCTCTTC | 2 cut(s) | 143, 428 |
| SaqAI | TTAA | 5 cut(s) | 647, 819, 1442, 1479, 1532 |
| Sau3AI | GATC | 8 cut(s) | 102, 676, 683, 1030, 1102, 1210, 1345, 1489 |
| Sau96I | GGNCC | 7 cut(s) | 28, 29, 164, 194, 388, 440, 466 |
| SchI | GAGTC | 2 cut(s) | 404, 626 |
| ScrFI | CCNGG | 9 cut(s) | 27, 168, 192, 286, 294, 399, 417, 432, 608 |
| SduI | GDGCHC | 3 cut(s) | 32, 423, 882 |
| SfaNI | GCATC | 2 cut(s) | 603, 1060 |
| SfcI | CTRYAG | 2 cut(s) | 1228, 1515 |
| SfoI | GGCGCC | 1 cut(s) | 154 |
| Sfr303I | CCGCGG | 1 cut(s) | 1280 |
| SgrBI | CCGCGG | 1 cut(s) | 1280 |
| SinI | GGWCC | 2 cut(s) | 388, 440 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 885, 1386 |
| SpeI | ACTAGT | 1 cut(s) | 1046 |
| Sse9I | AATT | 3 cut(s) | 733, 808, 840 |
| SspDI | GGCGCC | 1 cut(s) | 152 |
| SspMI | CTAG | 4 cut(s) | 470, 1014, 1047, 1179 |
| StyD4I | CCNGG | 9 cut(s) | 25, 166, 190, 284, 292, 397, 415, 430, 606 |
| TaaI | ACNGT | 4 cut(s) | 372, 693, 1055, 1168 |
| TaiI | ACGT | 4 cut(s) | 895, 1301, 1370, 1525 |
| TaqI | TCGA | 7 cut(s) | 129, 309, 408, 545, 781, 1209, 1340 |
| TaqII | GACCGA | 1 cut(s) | 376 |
| TasI | AATT | 3 cut(s) | 733, 808, 840 |
| TauI | GCSGC | 5 cut(s) | 25, 94, 153, 284, 292 |
| TfiI | GAWTC | 6 cut(s) | 593, 653, 917, 949, 1010, 1182 |
| Tru1I | TTAA | 5 cut(s) | 647, 819, 1442, 1479, 1532 |
| Tru9I | TTAA | 5 cut(s) | 647, 819, 1442, 1479, 1532 |
| TscAI | CASTG | 3 cut(s) | 775, 1060, 1207 |
| TseFI | GTSAC | 4 cut(s) | 51, 478, 1049, 1168 |
| TseI | GCWGC | 7 cut(s) | 19, 68, 256, 491, 626, 1413, 1424 |
| Tsp45I | GTSAC | 4 cut(s) | 51, 478, 1049, 1168 |
| TspDTI | ATGAA | 5 cut(s) | 36, 903, 962, 1104, 1113 |
| TspGWI | ACGGA | 1 cut(s) | 1307 |
| TspRI | CASTG | 3 cut(s) | 775, 1060, 1207 |
| VpaK11BI | GGWCC | 2 cut(s) | 388, 440 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 473 |
| XceI | RCATGY | 1 cut(s) | 1328 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 974 |
| XspI | CTAG | 4 cut(s) | 470, 1014, 1047, 1179 |