AT1G14180

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011785
Physical Location & Seq
Forward (+)
4847162 .. 4849413
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14180.1

Sequence Viewer

Length: 1047 bp
ATGGGTTCGCTCTGTTGTGTAGCTGCGAAGTCAGATAGATCAAATTCTACAAGTGGGGACTTTTCATTTGGCCTGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCTCCTTCATCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCATCAAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAACGATTTTGAATCTGCTACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGAAATGTCGGTATTGGTGACTCTGAACCTGGTCGTAACTCCTCAAGCCGGCGCTTTTTCTTGTCTAAGCCGGTTCATCCTATACTGCATCCTTCTGATAATGTTAGGGATACAGCATCTGATTCTGCGGATGCCTGCAGTTGGAGCAGCGGGACCCCAAGCAGCATTGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAACTCTACCAAAGCACAACAAGTAGCAGCTTCAAGTACATTTAAATGCGGACTGTGTAACAGATACCTCTCGCAGAAATCTCCGTGGGGATCTCGGTCCATTGTAAGAAACCGAGACATGCCTGTCACAGGAGTGCTTTCATGTCAACATGTCTTTCACGTGGAATGTCTTGACCAATCAACTCCAAAGATTCAACGCAATGACCCACTGTGTCCAATATGCACCAAACAGGAAGGAGAACACTTCAAATCAAACAACATTGTCCCGAGGCTTAAACCGCTTTATGAAGATGGGCCATCTTCAAGACCATGGGGCTGTGCTCAGGCCGGTGACTGTGTTGAAAGTGCTGTCAATGTGCCCCCTAAAAACACCATGATGATGATAAACCGGAACCGGATAAGGAAAAGCCTCTCATTGAGAGGAAACTCAAGCAAAGATTTTTCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGAAAATCTGGCTAATCAAGTCTCGCTTGTTCATTCTAGAGGGAAAGAGAAAGTTTCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

348

Amino Acids

38.35

Weight (kDa)

9.1

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
AatII GACGTC 1 cut(s) 135
AciI CCGC 4 cut(s) 425, 447, 555, 785
AclWI GGATC 2 cut(s) 175, 604
AcsI RAATTY 1 cut(s) 43
AcvI CACGTG 1 cut(s) 667
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 292, 544
AfiI CCNNNNNNNGG 3 cut(s) 345, 438, 635
AflIII ACRYGT 1 cut(s) 655
AgsI TTSAA 7 cut(s) 248, 540, 701, 754, 810, 848, 951
AjnI CCWGG 2 cut(s) 286, 325
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 4 cut(s) 23, 159, 221, 536
AluI AGCT 4 cut(s) 23, 159, 221, 536
Alw21I GWGCWC 1 cut(s) 829
Alw26I GTCTC 2 cut(s) 615, 1009
AlwI GGATC 2 cut(s) 175, 604
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 772
AoxI GGCC 3 cut(s) 70, 800, 831
ApeKI GCWGC 4 cut(s) 23, 444, 459, 533
ApoI RAATTY 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AseI ATTAAT 1 cut(s) 143
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 450, 603, 800
AsuHPI GGTGA 2 cut(s) 326, 848
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 2 cut(s) 450, 603
BaeGI GKGCMC 1 cut(s) 867
BbrPI CACGTG 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 829
BbvI GCAGC 4 cut(s) 10, 456, 471, 545
BccI CCATC 4 cut(s) 120, 143, 791, 811
BciT130I CCWGG 2 cut(s) 288, 327
BciVI GTATCC 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 615, 1009
BfaI CTAG 1 cut(s) 1020
BfmI CTRYAG 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 352
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 4 cut(s) 24, 445, 460, 534
BlsI GCNGC 4 cut(s) 25, 446, 461, 535
Bme1390I CCNGG 2 cut(s) 288, 327
Bme18I GGWCC 2 cut(s) 450, 603
BmeT110I CYCGRG 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 450, 603, 800
BmiI GGNNCC 3 cut(s) 451, 452, 899
BmrFI CCNGG 2 cut(s) 288, 327
BmsI GCATC 3 cut(s) 394, 418, 422
Bpu10I CCTNAGC 2 cut(s) 483, 828
BpuEI CTTGAG 3 cut(s) 201, 325, 919
BsaAI YACGTR 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 136, 590, 773, 815, 981
BsaWI WCCGGW 2 cut(s) 894, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 438, 635
Bse118I RCCGGY 3 cut(s) 345, 367, 833
Bse1I ACTGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 712
BseBI CCWGG 2 cut(s) 288, 327
BseDI CCNNGG 5 cut(s) 136, 590, 773, 815, 981
BseGI GGATG 5 cut(s) 154, 373, 385, 433, 481
BseLI CCNNNNNNNGG 3 cut(s) 345, 438, 635
BseMI GCAATG 1 cut(s) 712
BseMII CTCAG 3 cut(s) 474, 842, 987
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 2 cut(s) 102, 328
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 4 cut(s) 10, 456, 471, 545
BshFI GGCC 3 cut(s) 72, 802, 833
BsiHKAI GWGCWC 1 cut(s) 829
BsiHKCI CYCGRG 1 cut(s) 772
BsiSI CCGG 5 cut(s) 346, 368, 834, 895, 901
BslFI GGGAC 5 cut(s) 71, 143, 189, 463, 755
BslI CCNNNNNNNGG 3 cut(s) 345, 438, 635
BsmAI GTCTC 2 cut(s) 615, 1009
BsmFI GGGAC 5 cut(s) 71, 143, 189, 463, 755
BsnI GGCC 3 cut(s) 72, 802, 833
BsoBI CYCGRG 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 829, 867
Bsp143I GATC 4 cut(s) 38, 167, 265, 596
Bsp19I CCATGG 3 cut(s) 136, 815, 981
BspACI CCGC 4 cut(s) 425, 447, 555, 785
BspANI GGCC 3 cut(s) 72, 802, 833
BspCNI CTCAG 3 cut(s) 475, 841, 986
BspLI GGNNCC 3 cut(s) 451, 452, 899
BspMAI CTGCAG 1 cut(s) 437
BspPI GGATC 2 cut(s) 175, 604
BspQI GCTCTTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 712
BsrFI RCCGGY 3 cut(s) 345, 367, 833
BsrI ACTGG 1 cut(s) 488
BssAI RCCGGY 3 cut(s) 345, 367, 833
BssECI CCNNGG 5 cut(s) 136, 590, 773, 815, 981
BssMI GATC 4 cut(s) 38, 167, 265, 596
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 3 cut(s) 136, 815, 981
Bst2UI CCWGG 2 cut(s) 288, 327
Bst4CI ACNGT 3 cut(s) 561, 717, 842
Bst6I CTCTTC 3 cut(s) 228, 256, 956
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 74, 347, 433
BstDEI CTNAG 4 cut(s) 363, 483, 828, 973
BstDSI CCRYGG 4 cut(s) 136, 590, 815, 981
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 5 cut(s) 154, 373, 385, 433, 481
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 4 cut(s) 41, 170, 268, 599
BstMAI GTCTC 2 cut(s) 615, 1009
BstMBI GATC 4 cut(s) 38, 167, 265, 596
BstMWI GCNNNNNNNGC 2 cut(s) 441, 784
BstNI CCWGG 2 cut(s) 288, 327
BstNSI RCATGY 2 cut(s) 628, 659
BstSCI CCNGG 2 cut(s) 286, 325
BstSFI CTRYAG 1 cut(s) 433
BstSLI GKGCMC 1 cut(s) 867
BstV1I GCAGC 4 cut(s) 10, 456, 471, 545
BstX2I RGATCY 2 cut(s) 167, 596
BstYI RGATCY 2 cut(s) 167, 596
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 3 cut(s) 72, 802, 833
BtgI CCRYGG 4 cut(s) 136, 590, 815, 981
BtsCI GGATG 5 cut(s) 154, 373, 385, 433, 481
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 3 cut(s) 74, 347, 433
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 351
Cfr10I RCCGGY 3 cut(s) 345, 367, 833
Cfr13I GGNCC 3 cut(s) 450, 603, 800
CsiI ACCWGGT 2 cut(s) 286, 325
Csp6I GTAC 2 cut(s) 291, 543
CviAII CATG 9 cut(s) 77, 137, 625, 648, 656, 816, 880, 982, 1041
CviQI GTAC 2 cut(s) 291, 543
DdeI CTNAG 4 cut(s) 363, 483, 828, 973
DpnI GATC 4 cut(s) 40, 169, 267, 598
DpnII GATC 4 cut(s) 38, 167, 265, 596
DraI TTTAAA 1 cut(s) 550
DrdI GACNNNNNNGTC 1 cut(s) 629
DseDI GACNNNNNNGTC 1 cut(s) 629
Eam1104I CTCTTC 3 cut(s) 228, 256, 956
EarI CTCTTC 3 cut(s) 228, 256, 956
Eco130I CCWWGG 3 cut(s) 136, 815, 981
Eco47I GGWCC 2 cut(s) 450, 603
Eco72I CACGTG 1 cut(s) 667
Eco88I CYCGRG 1 cut(s) 772
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 286, 325
EcoT14I CCWWGG 3 cut(s) 136, 815, 981
ErhI CCWWGG 3 cut(s) 136, 815, 981
FaeI CATG 9 cut(s) 80, 140, 628, 651, 659, 819, 883, 985, 1044
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FaqI GGGAC 5 cut(s) 71, 143, 189, 463, 755
FatI CATG 9 cut(s) 76, 136, 624, 647, 655, 815, 879, 981, 1040
FauI CCCGC 1 cut(s) 440
Fnu4HI GCNGC 4 cut(s) 24, 445, 460, 534
FokI GGATG 5 cut(s) 161, 360, 372, 440, 488
Fsp4HI GCNGC 4 cut(s) 24, 445, 460, 534
FspBI CTAG 1 cut(s) 1020
GlaI GCGC 1 cut(s) 350
GluI GCNGC 4 cut(s) 24, 445, 460, 534
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 3 cut(s) 72, 802, 833
HapII CCGG 5 cut(s) 346, 368, 834, 895, 901
HhaI GCGC 1 cut(s) 351
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 9 cut(s) 80, 140, 628, 651, 659, 819, 883, 985, 1044
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 653
HindII GTYRAC 1 cut(s) 653
HinfI GANTC 5 cut(s) 248, 317, 419, 467, 697
HpaII CCGG 5 cut(s) 346, 368, 834, 895, 901
HphI GGTGA 2 cut(s) 326, 848
Hpy166II GTNNAC 1 cut(s) 653
Hpy188I TCNGA 5 cut(s) 34, 270, 322, 394, 418
Hpy8I GTNNAC 1 cut(s) 653
HpyAV CCTTC 3 cut(s) 126, 399, 734
HpyCH4III ACNGT 3 cut(s) 561, 717, 842
HpyCH4IV ACGT 2 cut(s) 132, 666
HpyCH4V TGCA 4 cut(s) 76, 385, 435, 729
HpyF10VI GCNNNNNNNGC 2 cut(s) 441, 784
HpyF3I CTNAG 4 cut(s) 363, 483, 828, 973
HpySE526I ACGT 2 cut(s) 132, 666
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 9 cut(s) 80, 140, 628, 651, 659, 819, 883, 985, 1044
HspAI GCGC 1 cut(s) 349
KflI GGGWCCC 1 cut(s) 450
KroI GCCGGC 1 cut(s) 345
KroNI GCCGGC 1 cut(s) 347
Kzo9I GATC 4 cut(s) 38, 167, 265, 596
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 441
Lsp1109I GCAGC 4 cut(s) 10, 456, 471, 545
LweI GCATC 3 cut(s) 394, 418, 422
MabI ACCWGGT 2 cut(s) 286, 325
MaeI CTAG 1 cut(s) 1020
MaeII ACGT 2 cut(s) 132, 666
MaeIII GTNAC 6 cut(s) 314, 332, 563, 631, 836, 968
MalI GATC 4 cut(s) 40, 169, 267, 598
MboI GATC 4 cut(s) 38, 167, 265, 596
MboII GAAGA 7 cut(s) 162, 188, 215, 273, 798, 806, 973
MflI RGATCY 2 cut(s) 167, 596
MhlI GDGCHC 2 cut(s) 829, 867
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 8 cut(s) 84, 123, 349, 584, 768, 920, 926, 1016
MroNI GCCGGC 1 cut(s) 345
MseI TTAA 4 cut(s) 143, 276, 549, 780
MslI CAYNNNNRTG 5 cut(s) 124, 550, 638, 881, 884
MspA1I CMGCKG 1 cut(s) 447
MspI CCGG 5 cut(s) 346, 368, 834, 895, 901
MspR9I CCNGG 2 cut(s) 288, 327
MvaI CCWGG 2 cut(s) 288, 327
MwoI GCNNNNNNNGC 2 cut(s) 441, 784
NaeI GCCGGC 1 cut(s) 347
NcoI CCATGG 3 cut(s) 136, 815, 981
NdeII GATC 4 cut(s) 38, 167, 265, 596
NgoMIV GCCGGC 1 cut(s) 345
NlaIII CATG 9 cut(s) 80, 140, 628, 651, 659, 819, 883, 985, 1044
NlaIV GGNNCC 3 cut(s) 451, 452, 899
NmuCI GTSAC 3 cut(s) 314, 631, 836
NspI RCATGY 2 cut(s) 628, 659
OliI CACNNNNGTG 1 cut(s) 638
PciI ACATGT 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 228
PdiI GCCGGC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 248, 419, 467, 697
PkrI GCNGC 4 cut(s) 25, 446, 461, 535
PleI GAGTC 1 cut(s) 311
PmaCI CACGTG 1 cut(s) 667
PmlI CACGTG 1 cut(s) 667
PpsI GAGTC 1 cut(s) 311
Ppu21I YACGTR 1 cut(s) 667
PpuMI RGGWCCY 1 cut(s) 450
PscI ACATGT 1 cut(s) 655
PshBI ATTAAT 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 286, 325
PspCI CACGTG 1 cut(s) 667
PspGI CCWGG 2 cut(s) 286, 325
PspN4I GGNNCC 3 cut(s) 451, 452, 899
PspPI GGNCC 3 cut(s) 450, 603, 800
PspPPI RGGWCCY 1 cut(s) 450
PstI CTGCAG 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 167, 596
RsaI GTAC 2 cut(s) 292, 544
RsaNI GTAC 2 cut(s) 291, 543
RseI CAYNNNNRTG 5 cut(s) 124, 550, 638, 881, 884
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 4 cut(s) 143, 276, 549, 780
SatI GCNGC 4 cut(s) 24, 445, 460, 534
Sau3AI GATC 4 cut(s) 38, 167, 265, 596
Sau96I GGNCC 3 cut(s) 450, 603, 800
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 288, 327
SduI GDGCHC 2 cut(s) 829, 867
SexAI ACCWGGT 2 cut(s) 286, 325
SfaNI GCATC 3 cut(s) 394, 418, 422
SfcI CTRYAG 1 cut(s) 433
SinI GGWCC 2 cut(s) 450, 603
SmiI ATTTAAAT 1 cut(s) 550
SmiMI CAYNNNNRTG 5 cut(s) 124, 550, 638, 881, 884
SmlI CTYRAG 3 cut(s) 216, 340, 934
SmoI CTYRAG 3 cut(s) 216, 340, 934
Sse9I AATT 1 cut(s) 43
SsiI CCGC 4 cut(s) 425, 447, 555, 785
SspMI CTAG 1 cut(s) 1020
StyD4I CCNGG 2 cut(s) 286, 325
StyI CCWWGG 3 cut(s) 136, 815, 981
SwaI ATTTAAAT 1 cut(s) 550
TaaI ACNGT 3 cut(s) 561, 717, 842
TaiI ACGT 2 cut(s) 135, 669
TaqI TCGA 1 cut(s) 122
TaqII GACCGA 1 cut(s) 591
TasI AATT 1 cut(s) 43
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 4 cut(s) 248, 419, 467, 697
Tru1I TTAA 4 cut(s) 143, 276, 549, 780
Tru9I TTAA 4 cut(s) 143, 276, 549, 780
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 3 cut(s) 314, 631, 836
TseI GCWGC 4 cut(s) 23, 444, 459, 533
Tsp45I GTSAC 3 cut(s) 314, 631, 836
TspDTI ATGAA 9 cut(s) 54, 108, 215, 362, 636, 807, 974, 1004, 1029
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 1 cut(s) 720
VpaK11BI GGWCC 2 cut(s) 450, 603
VspI ATTAAT 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 633
XapI RAATTY 1 cut(s) 43
XbaI TCTAGA 1 cut(s) 1019
XceI RCATGY 2 cut(s) 628, 659
XcmI CCANNNNNNNNNTGG 2 cut(s) 495, 988
XspI CTAG 1 cut(s) 1020
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.