Prupe.1G276800_v2.0.a1

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011785
Physical Location & Seq
Reverse (-)
28195516 .. 28198035
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G276800.1

Sequence Viewer

Length: 1284 bp
CCACATGAATCACATACGGCCAGTAGGGATTGGTCCGTGGGTCCAGAGGAGCCTTGCTGGCGAACTAATACGAGCTTCTCACCACCCCCATCGAGATGGGATTTCCGATTCCAACCTGAAGAACTACAATATGGTTTGCATGATGGTATTCAGCAACAGGGGTCTTCTACTTCATCAAACAGTAAAGGAAGTAGGGGCTGGGTAAGAGGCAACAATCTCTATAATCATCACTACTCTGCATCTGATGGTGCTGCACTGTTTTTAAGTAGTTCATCTGACCTTTCTCAAGGTCCTCAGTGGACACCTCCAGCAATACAGGAAATCAGTATAGATGATTATGAAACTGCAAAAAGGAGAGGTCCAGCTTTTGGGCATTCATTCTTTAGACCTACCATGGAGGGAACTTCAGAAATTCAAGACACCGGGGGATCCTCCTCATCCCGTTCAGACAGCAGTGAGTCTGAACCTGCAGTCAAGGCATGCCTATCTTCTCATCATACTTTACCGAGCCGCCGTTCATTCATGTCCAAACCTATTCATCCCTTATCTTTTCCTGCACAAACTCCTCCAAGAGAGGCTTCTGACCTTACTTTAGCTGGATTTACGGAATTTGATGCCGCCACTCCTCAAAGAGATGGCCACCGCTGGAGCAGTGCGAGTAGCAGCATTGATTTTGCAGATGTTTCTGAGTCATTTGAGGCAGAAATTTCTGGTCGACCATGTAATAATATGTCTGATGGTTTTAGATGCGGGTTGTGTGAAAGGTTTCTTTCACAGAGATCACCTTGGAGTTCTCGTAGGATAGTAAGAAGTGGAGATATGCCAGTCACAGGGGTGCTTTCTTGTTGTCATGTCTTCCATGCAGAGTGCTTGGAGCAAACAACGCCCAAGACACGTAAAAATGACCCTCCCTGCCCATTATGTGCCAGACTTGAGGAGGAAAATCTCCCTGAGCAGCAAGGCTTCTCAAGACTGCGGACTGGTTTTCCACGGCTCAGACCAATTTCTGATGACGGGTCATCCAGGCCTTGGGGATGTACGCAGGTAGGAGATTGTGTTGAAGGGGCTTTGCATGCTCCCCCGCGCAATAGTATGCTGTTGCTTAACAGAAGTCGCATAAAGAAAAATCTTTCTTTGAAAGGTAATTTGGGCAAAGAATTTCCAGGTAAGTTGAGAAAAAGTGGCTCTTACTCTTTTCAGCATTTGAGTGGAAAATCAGCTGACCAGGGAGCAGTTGGAAGCTCAAAGTCAAAGATGACTGCAGGCCTGACTATTAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

428

Amino Acids

46.87

Weight (kDa)

8.33

Isoelectric Point (pI)

66.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 475, 1033
AccB7I CCANNNNNTGG 2 cut(s) 368, 1029
AccI GTMKAC 1 cut(s) 715
AccII CGCG 1 cut(s) 1084
AciI CCGC 6 cut(s) 511, 618, 643, 750, 976, 1082
AclWI GGATC 2 cut(s) 423, 436
AcoI YGGCCR 2 cut(s) 18, 637
AcsI RAATTY 4 cut(s) 411, 608, 705, 1157
AcuI CTGAAG 2 cut(s) 138, 390
AfaI GTAC 1 cut(s) 1039
AfiI CCNNNNNNNGG 3 cut(s) 368, 830, 1029
AflIII ACRYGT 1 cut(s) 893
AgsI TTSAA 3 cut(s) 416, 1061, 1138
AjnI CCWGG 3 cut(s) 1022, 1162, 1224
AjuI GAANNNNNNNTTGG 4 cut(s) 562, 594, 1130, 1162
AleI CACNNNNGTG 1 cut(s) 833
AluBI AGCT 5 cut(s) 75, 365, 596, 1220, 1242
AluI AGCT 5 cut(s) 75, 365, 596, 1220, 1242
AlwI GGATC 2 cut(s) 423, 436
AoxI GGCC 4 cut(s) 18, 637, 1025, 1264
ApeKI GCWGC 3 cut(s) 251, 663, 955
ApoI RAATTY 4 cut(s) 411, 608, 705, 1157
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 1 cut(s) 1086
AspS9I GGNCC 4 cut(s) 33, 41, 290, 359
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 72, 774
AvaII GGWCC 4 cut(s) 33, 41, 290, 359
BalI TGGCCA 1 cut(s) 639
BamHI GGATCC 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 156, 847
BbvI GCAGC 3 cut(s) 238, 675, 967
BccI CCATC 6 cut(s) 90, 97, 137, 239, 629, 731
BceAI ACGGC 3 cut(s) 33, 498, 1007
BciT130I CCWGG 3 cut(s) 1024, 1164, 1226
BcnI CCSGG 1 cut(s) 424
BfmI CTRYAG 2 cut(s) 468, 1260
BfuAI ACCTGC 2 cut(s) 475, 1033
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 5 cut(s) 252, 511, 618, 664, 956
BlsI GCNGC 5 cut(s) 253, 512, 619, 665, 957
Bme1390I CCNGG 4 cut(s) 424, 1024, 1164, 1226
Bme18I GGWCC 4 cut(s) 33, 41, 290, 359
BmgT120I GGNCC 4 cut(s) 33, 41, 290, 359
BmiI GGNNCC 3 cut(s) 42, 51, 430
BmrFI CCNGG 4 cut(s) 424, 1024, 1164, 1226
BmsI GCATC 3 cut(s) 248, 604, 737
BpiI GAAGAC 2 cut(s) 156, 847
BpmI CTGGAG 2 cut(s) 291, 667
Bpu10I CCTNAGC 1 cut(s) 951
BpuEI CTTGAG 3 cut(s) 270, 952, 953
BpuMI CCSGG 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 896
BsaJI CCNNGG 7 cut(s) 36, 393, 423, 785, 989, 1028, 1225
BsaXI ACNNNNNCTCC 4 cut(s) 781, 811, 1041, 1071
Bsc4I CCNNNNNNNGG 3 cut(s) 368, 830, 1029
Bse1I ACTGG 3 cut(s) 21, 824, 985
BseBI CCWGG 3 cut(s) 1024, 1164, 1226
BseDI CCNNGG 7 cut(s) 36, 393, 423, 785, 989, 1028, 1225
BseGI GGATG 4 cut(s) 437, 538, 1019, 1040
BseLI CCNNNNNNNGG 3 cut(s) 368, 830, 1029
BseMII CTCAG 4 cut(s) 308, 678, 942, 1009
BseNI ACTGG 3 cut(s) 21, 824, 985
BseRI GAGGAG 5 cut(s) 62, 424, 555, 615, 950
BseXI GCAGC 3 cut(s) 238, 675, 967
BseYI CCCAGC 1 cut(s) 198
BsgI GTGCAG 2 cut(s) 237, 540
Bsh1236I CGCG 1 cut(s) 1084
BshFI GGCC 4 cut(s) 20, 639, 1027, 1266
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 368, 830, 1029
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 4 cut(s) 20, 639, 1027, 1266
Bsp143I GATC 2 cut(s) 428, 779
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 6 cut(s) 511, 618, 643, 750, 976, 1082
BspANI GGCC 4 cut(s) 20, 639, 1027, 1266
BspCNI CTCAG 4 cut(s) 307, 679, 943, 1008
BspFNI CGCG 1 cut(s) 1084
BspLI GGNNCC 3 cut(s) 42, 51, 430
BspMAI CTGCAG 2 cut(s) 472, 1264
BspMI ACCTGC 2 cut(s) 475, 1033
BspPI GGATC 2 cut(s) 423, 436
BsrI ACTGG 3 cut(s) 21, 824, 985
BssECI CCNNGG 7 cut(s) 36, 393, 423, 785, 989, 1028, 1225
BssMI GATC 2 cut(s) 428, 779
BssT1I CCWWGG 3 cut(s) 393, 785, 1028
Bst2UI CCWGG 3 cut(s) 1024, 1164, 1226
Bst4CI ACNGT 2 cut(s) 182, 258
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 4 cut(s) 59, 481, 1074, 1264
BstDEI CTNAG 4 cut(s) 294, 687, 951, 995
BstDSI CCRYGG 3 cut(s) 36, 393, 989
BstF5I GGATG 4 cut(s) 437, 538, 1019, 1040
BstFNI CGCG 1 cut(s) 1084
BstHHI GCGC 1 cut(s) 1086
BstKTI GATC 2 cut(s) 431, 782
BstMBI GATC 2 cut(s) 428, 779
BstMWI GCNNNNNNNGC 4 cut(s) 58, 476, 883, 1073
BstNI CCWGG 3 cut(s) 1024, 1164, 1226
BstNSI RCATGY 2 cut(s) 483, 1076
BstSCI CCNGG 4 cut(s) 422, 1022, 1162, 1224
BstSFI CTRYAG 2 cut(s) 468, 1260
BstUI CGCG 1 cut(s) 1084
BstV1I GCAGC 3 cut(s) 238, 675, 967
BstV2I GAAGAC 2 cut(s) 156, 847
BstX2I RGATCY 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 428
BsuRI GGCC 4 cut(s) 20, 639, 1027, 1266
BtgI CCRYGG 3 cut(s) 36, 393, 989
BtsCI GGATG 4 cut(s) 437, 538, 1019, 1040
BtsI GCAGTG 2 cut(s) 460, 658
BtsIMutI CAGTG 4 cut(s) 254, 302, 460, 658
BveI ACCTGC 2 cut(s) 475, 1033
Cac8I GCNNGC 4 cut(s) 59, 481, 1074, 1264
CfoI GCGC 1 cut(s) 1086
Cfr13I GGNCC 4 cut(s) 33, 41, 290, 359
Csp6I GTAC 1 cut(s) 1038
CviAII CATG 9 cut(s) 5, 140, 394, 480, 523, 720, 851, 860, 1073
CviQI GTAC 1 cut(s) 1038
DdeI CTNAG 4 cut(s) 294, 687, 951, 995
DpnI GATC 2 cut(s) 430, 781
DpnII GATC 2 cut(s) 428, 779
EaeI YGGCCR 2 cut(s) 18, 637
Eco130I CCWWGG 3 cut(s) 393, 785, 1028
Eco147I AGGCCT 2 cut(s) 1027, 1266
Eco47I GGWCC 4 cut(s) 33, 41, 290, 359
Eco57I CTGAAG 2 cut(s) 138, 390
EcoO109I RGGNCCY 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 1022, 1162, 1224
EcoT14I CCWWGG 3 cut(s) 393, 785, 1028
ErhI CCWWGG 3 cut(s) 393, 785, 1028
FaeI CATG 9 cut(s) 8, 143, 397, 483, 526, 723, 854, 863, 1076
FalI AAGNNNNNCTT 4 cut(s) 562, 594, 1171, 1203
FatI CATG 9 cut(s) 4, 139, 393, 479, 522, 719, 850, 859, 1072
FauI CCCGC 2 cut(s) 743, 1089
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 5 cut(s) 252, 511, 618, 664, 956
FokI GGATG 4 cut(s) 424, 525, 1006, 1047
Fsp4HI GCNGC 5 cut(s) 252, 511, 618, 664, 956
GlaI GCGC 1 cut(s) 1085
GluI GCNGC 5 cut(s) 252, 511, 618, 664, 956
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 2 cut(s) 291, 667
HaeIII GGCC 4 cut(s) 20, 639, 1027, 1266
HapII CCGG 1 cut(s) 423
HhaI GCGC 1 cut(s) 1086
Hin1II CATG 9 cut(s) 8, 143, 397, 483, 526, 723, 854, 863, 1076
Hin6I GCGC 1 cut(s) 1084
HinP1I GCGC 1 cut(s) 1084
HincII GTYRAC 1 cut(s) 716
HindII GTYRAC 1 cut(s) 716
HinfI GANTC 4 cut(s) 8, 108, 458, 689
HpaII CCGG 1 cut(s) 423
HphI GGTGA 2 cut(s) 72, 774
Hpy166II GTNNAC 2 cut(s) 300, 716
Hpy188III TCNNGA 4 cut(s) 44, 93, 416, 969
Hpy8I GTNNAC 2 cut(s) 300, 716
HpyAV CCTTC 1 cut(s) 1055
HpyCH4III ACNGT 2 cut(s) 182, 258
HpyCH4IV ACGT 1 cut(s) 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 476, 883, 1073
HpyF3I CTNAG 4 cut(s) 294, 687, 951, 995
HpySE526I ACGT 1 cut(s) 895
Hsp92II CATG 9 cut(s) 8, 143, 397, 483, 526, 723, 854, 863, 1076
HspAI GCGC 1 cut(s) 1084
Kzo9I GATC 2 cut(s) 428, 779
LmnI GCTCC 5 cut(s) 49, 648, 874, 1081, 1229
Lsp1109I GCAGC 3 cut(s) 238, 675, 967
LweI GCATC 3 cut(s) 248, 604, 737
MaeII ACGT 1 cut(s) 895
MaeIII GTNAC 1 cut(s) 826
MalI GATC 2 cut(s) 430, 781
MboI GATC 2 cut(s) 428, 779
MboII GAAGA 4 cut(s) 131, 156, 480, 847
MflI RGATCY 1 cut(s) 428
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 6 cut(s) 411, 608, 705, 1002, 1144, 1157
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 2 cut(s) 467, 698
MmeI TCCRAC 2 cut(s) 136, 1216
Mox20I TGGCCA 1 cut(s) 639
MroXI GAANNNNTTC 1 cut(s) 765
MscI TGGCCA 1 cut(s) 639
MseI TTAA 3 cut(s) 263, 1104, 1275
MslI CAYNNNNRTG 3 cut(s) 94, 833, 1206
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 2 cut(s) 645, 1220
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 4 cut(s) 424, 1024, 1164, 1226
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 3 cut(s) 1024, 1164, 1226
MvnI CGCG 1 cut(s) 1084
MwoI GCNNNNNNNGC 4 cut(s) 58, 476, 883, 1073
NciI CCSGG 1 cut(s) 424
NcoI CCATGG 1 cut(s) 393
NdeII GATC 2 cut(s) 428, 779
NlaIII CATG 9 cut(s) 8, 143, 397, 483, 526, 723, 854, 863, 1076
NlaIV GGNNCC 3 cut(s) 42, 51, 430
NmuCI GTSAC 1 cut(s) 826
NspI RCATGY 2 cut(s) 483, 1076
OliI CACNNNNGTG 1 cut(s) 833
PaeI GCATGC 2 cut(s) 483, 1076
PceI AGGCCT 2 cut(s) 1027, 1266
PctI GAATGC 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 2 cut(s) 8, 108
PflMI CCANNNNNTGG 2 cut(s) 368, 1029
PkrI GCNGC 5 cut(s) 253, 512, 619, 665, 957
PleI GAGTC 2 cut(s) 466, 697
PpsI GAGTC 2 cut(s) 466, 697
Ppu21I YACGTR 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 290
Psp6I CCWGG 3 cut(s) 1022, 1162, 1224
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 3 cut(s) 1022, 1162, 1224
PspN4I GGNNCC 3 cut(s) 42, 51, 430
PspPI GGNCC 4 cut(s) 33, 41, 290, 359
PspPPI RGGWCCY 1 cut(s) 290
PstI CTGCAG 2 cut(s) 472, 1264
PsuI RGATCY 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 1220
RsaI GTAC 1 cut(s) 1039
RsaNI GTAC 1 cut(s) 1038
RseI CAYNNNNRTG 3 cut(s) 94, 833, 1206
SalI GTCGAC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 263, 1104, 1275
SatI GCNGC 5 cut(s) 252, 511, 618, 664, 956
Sau3AI GATC 2 cut(s) 428, 779
Sau96I GGNCC 4 cut(s) 33, 41, 290, 359
SchI GAGTC 2 cut(s) 467, 698
ScrFI CCNGG 4 cut(s) 424, 1024, 1164, 1226
SfaNI GCATC 3 cut(s) 248, 604, 737
SfcI CTRYAG 2 cut(s) 468, 1260
SinI GGWCC 4 cut(s) 33, 41, 290, 359
SmiMI CAYNNNNRTG 3 cut(s) 94, 833, 1206
SmlI CTYRAG 3 cut(s) 285, 932, 967
SmoI CTYRAG 3 cut(s) 285, 932, 967
SphI GCATGC 2 cut(s) 483, 1076
Sse9I AATT 6 cut(s) 411, 608, 705, 1002, 1144, 1157
SseBI AGGCCT 2 cut(s) 1027, 1266
SsiI CCGC 6 cut(s) 511, 618, 643, 750, 976, 1082
StuI AGGCCT 2 cut(s) 1027, 1266
StyD4I CCNGG 4 cut(s) 422, 1022, 1162, 1224
StyI CCWWGG 3 cut(s) 393, 785, 1028
TaaI ACNGT 2 cut(s) 182, 258
TaiI ACGT 1 cut(s) 898
TaqI TCGA 2 cut(s) 92, 715
TasI AATT 6 cut(s) 411, 608, 705, 1002, 1144, 1157
TauI GCSGC 2 cut(s) 513, 620
TfiI GAWTC 2 cut(s) 8, 108
Tru1I TTAA 3 cut(s) 263, 1104, 1275
Tru9I TTAA 3 cut(s) 263, 1104, 1275
TscAI CASTG 4 cut(s) 261, 302, 460, 658
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 3 cut(s) 251, 663, 955
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 8 cut(s) 21, 162, 261, 354, 366, 507, 511, 527
TspGWI ACGGA 2 cut(s) 25, 620
TspRI CASTG 4 cut(s) 261, 302, 460, 658
Van91I CCANNNNNTGG 2 cut(s) 368, 1029
VpaK11BI GGWCC 4 cut(s) 33, 41, 290, 359
XapI RAATTY 4 cut(s) 411, 608, 705, 1157
XceI RCATGY 2 cut(s) 483, 1076
XcmI CCANNNNNNNNNTGG 1 cut(s) 1232
XmiI GTMKAC 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.