Rh4CG396900

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011785
Physical Location & Seq
Forward (+)
64628919 .. 64631219
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG396900.1

Sequence Viewer

Length: 1191 bp
ATGAGTCACATACGGCCAGTAGGGACTGAACTGCAATATGGTTTGCATGATGGTGTGCAACTATATGGGTCTTCTACTTCATCAAACAGTAGAGGAAGTAGGGGATGGGTGAGAGGGAATCATCTCTATAATCATCATTACTCTGCATCTGATGGTGCTGGGCTGTTTTTAAGTAGTTCGTCTGACCATTCTCAAGGTCCTCAGTGGACACCTCCAGCAATACAGGAAATCAGTATCGATGATTATGAAACTACAAAAAGGAGAGGTCCAGCTTTTGGGAAGTCATCCTTTAGACCTACCATGGAGGGAACCTCAGAAATTCAAGATACTGGGGGGTCCACGTCATCTCGTTCAGACAGTAGTGAATCTGAACCCACGGTCAAGGCATCCCTATCTTGTCATCATACTTTCGCAAGTCGCCGTTCTTTCATGTCCAAACCTATATATCCCTTGTCATTTCCTCCACAAACTCCCCCCAGAGAGGCTTCTGACTTCACAGTTGCTGGGTTTCCTGAATTTGATGCTGCCACTCCTCAGAGAGATGGCCACCGCTGGAGCAGTGCCAGCAGCAGTGTTGATTTTACTGATGTTTCTGAGTCATTTGAGGCAGAAATTTCTGGTCGACACTTTAGTAATATGTCTGAGGGGTTTAGATGTGGCTTGTGTGATAGGTTCCTTTCACAGAGATCACCTTGGAGTTCTCGTCGCATAGTCAGAAGTGGAGATATGCCAATCACTGGGGTTCTTTCTTGTTGTCATGTTTTCCATGCAGAGTGCTTGGAGCAAACAACACCGAAGATCCGCAAAAGCGACCCTCCCTGCCCCCTATGTGCCCGACTTGAGGAGGAAAATCTCTCTGAACAGCAAAGCTTTTCTAGATTGCGAGCTAGTTTTCCAAGACTTAGACCAATTAGTGATGATGGACCATCCAGGCCTTGGGGATGCGCTCAGGTGGGAGATTGTGTTGAAGGGGCTTTGCATGCTCCCCCACGCAATAGTATGCTGTTGCTCAATAAGAGTCGCATAAAGAAAAATCTTTCTTTGAAAAGCAATTCGAGCAAAGAATTTCCTGGTAAATTGAGAAAAAGCGGCGCTTACTATTCACAACATCTGAGTGGAAAATCAGTTGATCAGGGAGCAGTTGGATGCTCAAAGTCAAAGATGACAGCAGGGCCGAGTATTAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

43.34

Weight (kDa)

8.83

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 275, 737, 936
AccI GTMKAC 1 cut(s) 622
AciI CCGC 3 cut(s) 550, 802, 1089
AclWI GGATC 1 cut(s) 793
AcoI YGGCCR 2 cut(s) 14, 544
AcsI RAATTY 4 cut(s) 318, 515, 612, 1064
AfiI CCNNNNNNNGG 5 cut(s) 275, 481, 737, 841, 936
AgsI TTSAA 3 cut(s) 323, 968, 1045
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 2 cut(s) 929, 1069
AluBI AGCT 4 cut(s) 272, 870, 887, 1188
AluI AGCT 4 cut(s) 272, 870, 887, 1188
AlwI GGATC 1 cut(s) 793
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 4 cut(s) 14, 544, 932, 1172
ApeKI GCWGC 2 cut(s) 524, 567
ApoI RAATTY 4 cut(s) 318, 515, 612, 1064
AspLEI GCGC 2 cut(s) 947, 1094
AspS9I GGNCC 5 cut(s) 197, 266, 336, 923, 1172
AsuHPI GGTGA 2 cut(s) 121, 681
AvaII GGWCC 4 cut(s) 197, 266, 336, 923
BaeGI GKGCMC 1 cut(s) 835
BalI TGGCCA 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 511, 579
BccI CCATC 6 cut(s) 44, 99, 146, 536, 914, 934
BceAI ACGGC 2 cut(s) 29, 405
BciT130I CCWGG 2 cut(s) 931, 1071
BclI TGATCA 1 cut(s) 1129
BfaI CTAG 2 cut(s) 876, 888
BfoI RGCGCY 1 cut(s) 1095
BisI GCNGC 3 cut(s) 525, 568, 1090
BlsI GCNGC 3 cut(s) 526, 569, 1091
Bme1390I CCNGG 2 cut(s) 931, 1071
Bme18I GGWCC 4 cut(s) 197, 266, 336, 923
BmgBI CACGTC 1 cut(s) 342
BmgT120I GGNCC 5 cut(s) 197, 266, 336, 923, 1172
BmiI GGNNCC 3 cut(s) 310, 337, 674
BmrFI CCNGG 2 cut(s) 931, 1071
BmrI ACTGGG 2 cut(s) 339, 747
BmsI GCATC 5 cut(s) 155, 395, 511, 932, 1136
BmuI ACTGGG 2 cut(s) 339, 747
BpiI GAAGAC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 2 cut(s) 198, 574
Bpu10I CCTNAGC 1 cut(s) 948
BpuEI CTTGAG 2 cut(s) 177, 860
Bsa29I ATCGAT 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 300, 375, 692, 935
BsaXI ACNNNNNCTCC 4 cut(s) 688, 718, 948, 978
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 481, 737, 841, 936
Bse1I ACTGG 3 cut(s) 17, 334, 742
BseBI CCWGG 2 cut(s) 931, 1071
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 4 cut(s) 300, 375, 692, 935
BseGI GGATG 6 cut(s) 110, 284, 386, 926, 947, 1151
BseLI CCNNNNNNNGG 5 cut(s) 275, 481, 737, 841, 936
BseMII CTCAG 7 cut(s) 215, 327, 548, 585, 633, 962, 1103
BseNI ACTGG 3 cut(s) 17, 334, 742
BseRI GAGGAG 2 cut(s) 522, 857
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 2 cut(s) 511, 579
BseYI CCCAGC 2 cut(s) 158, 503
BshFI GGCC 4 cut(s) 16, 546, 934, 1174
BshVI ATCGAT 1 cut(s) 237
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 5 cut(s) 275, 481, 737, 841, 936
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 4 cut(s) 16, 546, 934, 1174
Bsp1286I GDGCHC 1 cut(s) 835
Bsp143I GATC 3 cut(s) 686, 798, 1129
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 3 cut(s) 550, 802, 1089
BspANI GGCC 4 cut(s) 16, 546, 934, 1174
BspCNI CTCAG 7 cut(s) 214, 326, 547, 586, 634, 961, 1104
BspDI ATCGAT 1 cut(s) 237
BspLI GGNNCC 3 cut(s) 310, 337, 674
BspPI GGATC 1 cut(s) 793
BsrI ACTGG 3 cut(s) 17, 334, 742
BssECI CCNNGG 4 cut(s) 300, 375, 692, 935
BssMI GATC 3 cut(s) 686, 798, 1129
BssT1I CCWWGG 3 cut(s) 300, 692, 935
Bst2UI CCWGG 2 cut(s) 931, 1071
Bst4CI ACNGT 4 cut(s) 89, 359, 379, 499
BstC8I GCNNGC 3 cut(s) 565, 885, 981
BstDEI CTNAG 8 cut(s) 201, 313, 534, 594, 642, 902, 948, 1112
BstDSI CCRYGG 2 cut(s) 300, 375
BstF5I GGATG 6 cut(s) 110, 284, 386, 926, 947, 1151
BstH2I RGCGCY 1 cut(s) 1095
BstHHI GCGC 2 cut(s) 947, 1094
BstKTI GATC 3 cut(s) 689, 801, 1132
BstMBI GATC 3 cut(s) 686, 798, 1129
BstMWI GCNNNNNNNGC 3 cut(s) 564, 980, 1056
BstNI CCWGG 2 cut(s) 931, 1071
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 2 cut(s) 929, 1069
BstSLI GKGCMC 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 511, 579
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 4 cut(s) 16, 546, 934, 1174
BsuTUI ATCGAT 1 cut(s) 237
BtgI CCRYGG 2 cut(s) 300, 375
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 6 cut(s) 110, 284, 386, 926, 947, 1151
BtsI GCAGTG 2 cut(s) 565, 577
BtsIMutI CAGTG 4 cut(s) 209, 565, 577, 735
Cac8I GCNNGC 3 cut(s) 565, 885, 981
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 2 cut(s) 947, 1094
Cfr13I GGNCC 5 cut(s) 197, 266, 336, 923, 1172
ClaI ATCGAT 1 cut(s) 237
CviAII CATG 6 cut(s) 47, 301, 430, 758, 767, 980
DdeI CTNAG 8 cut(s) 201, 313, 534, 594, 642, 902, 948, 1112
DpnI GATC 3 cut(s) 688, 800, 1131
DpnII GATC 3 cut(s) 686, 798, 1129
EaeI YGGCCR 2 cut(s) 14, 544
Eco130I CCWWGG 3 cut(s) 300, 692, 935
Eco147I AGGCCT 1 cut(s) 934
Eco47I GGWCC 4 cut(s) 197, 266, 336, 923
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 929, 1069
EcoT14I CCWWGG 3 cut(s) 300, 692, 935
ErhI CCWWGG 3 cut(s) 300, 692, 935
FaeI CATG 6 cut(s) 50, 304, 433, 761, 770, 983
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 1078, 1110
FaqI GGGAC 1 cut(s) 37
FatI CATG 6 cut(s) 46, 300, 429, 757, 766, 979
FbaI TGATCA 1 cut(s) 1129
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 3 cut(s) 525, 568, 1090
FokI GGATG 6 cut(s) 117, 271, 373, 913, 954, 1158
Fsp4HI GCNGC 3 cut(s) 525, 568, 1090
FspBI CTAG 2 cut(s) 876, 888
GlaI GCGC 2 cut(s) 946, 1093
GluI GCNGC 3 cut(s) 525, 568, 1090
GsaI CCCAGC 2 cut(s) 162, 507
GsuI CTGGAG 2 cut(s) 198, 574
HaeII RGCGCY 1 cut(s) 1095
HaeIII GGCC 4 cut(s) 16, 546, 934, 1174
HhaI GCGC 2 cut(s) 947, 1094
Hin1II CATG 6 cut(s) 50, 304, 433, 761, 770, 983
Hin6I GCGC 2 cut(s) 945, 1092
HinP1I GCGC 2 cut(s) 945, 1092
HincII GTYRAC 1 cut(s) 623
HindII GTYRAC 1 cut(s) 623
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 5 cut(s) 4, 118, 365, 596, 1018
HphI GGTGA 2 cut(s) 121, 681
Hpy166II GTNNAC 3 cut(s) 207, 339, 623
Hpy188III TCNNGA 3 cut(s) 323, 512, 876
Hpy8I GTNNAC 3 cut(s) 207, 339, 623
Hpy99I CGWCG 1 cut(s) 708
HpyAV CCTTC 1 cut(s) 962
HpyCH4III ACNGT 4 cut(s) 89, 359, 379, 499
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 6 cut(s) 34, 46, 58, 146, 770, 979
HpyF10VI GCNNNNNNNGC 3 cut(s) 564, 980, 1056
HpyF3I CTNAG 8 cut(s) 201, 313, 534, 594, 642, 902, 948, 1112
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 6 cut(s) 50, 304, 433, 761, 770, 983
HspAI GCGC 2 cut(s) 945, 1092
Ksp22I TGATCA 1 cut(s) 1129
Kzo9I GATC 3 cut(s) 686, 798, 1129
LmnI GCTCC 4 cut(s) 555, 781, 988, 1136
Lsp1109I GCAGC 2 cut(s) 511, 579
LweI GCATC 5 cut(s) 155, 395, 511, 932, 1136
MaeI CTAG 2 cut(s) 876, 888
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 5
MalI GATC 3 cut(s) 688, 800, 1131
MboI GATC 3 cut(s) 686, 798, 1129
MboII GAAGA 2 cut(s) 63, 808
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 1 cut(s) 835
MlsI TGGCCA 1 cut(s) 546
MluCI AATT 7 cut(s) 318, 515, 612, 909, 1051, 1064, 1076
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 3 cut(s) 13, 605, 1027
MmeI TCCRAC 1 cut(s) 1123
Mox20I TGGCCA 1 cut(s) 546
MscI TGGCCA 1 cut(s) 546
MseI TTAA 2 cut(s) 170, 1182
MslI CAYNNNNRTG 2 cut(s) 51, 1113
Msp20I TGGCCA 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 552
MspR9I CCNGG 2 cut(s) 931, 1071
MvaI CCWGG 2 cut(s) 931, 1071
MwoI GCNNNNNNNGC 3 cut(s) 564, 980, 1056
NcoI CCATGG 1 cut(s) 300
NdeII GATC 3 cut(s) 686, 798, 1129
NlaIII CATG 6 cut(s) 50, 304, 433, 761, 770, 983
NlaIV GGNNCC 3 cut(s) 310, 337, 674
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 983
PaeI GCATGC 1 cut(s) 983
PceI AGGCCT 1 cut(s) 934
PfeI GAWTC 2 cut(s) 118, 365
PflMI CCANNNNNTGG 3 cut(s) 275, 737, 936
PkrI GCNGC 3 cut(s) 526, 569, 1091
PleI GAGTC 3 cut(s) 12, 604, 1026
PpsI GAGTC 3 cut(s) 12, 604, 1026
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 929, 1069
PspFI CCCAGC 2 cut(s) 158, 503
PspGI CCWGG 2 cut(s) 929, 1069
PspN4I GGNNCC 3 cut(s) 310, 337, 674
PspPI GGNCC 5 cut(s) 197, 266, 336, 923, 1172
PspPPI RGGWCCY 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 798
RseI CAYNNNNRTG 2 cut(s) 51, 1113
SalI GTCGAC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 170, 1182
SatI GCNGC 3 cut(s) 525, 568, 1090
Sau3AI GATC 3 cut(s) 686, 798, 1129
Sau96I GGNCC 5 cut(s) 197, 266, 336, 923, 1172
SchI GAGTC 3 cut(s) 13, 605, 1027
ScrFI CCNGG 2 cut(s) 931, 1071
SduI GDGCHC 1 cut(s) 835
SfaNI GCATC 5 cut(s) 155, 395, 511, 932, 1136
SinI GGWCC 4 cut(s) 197, 266, 336, 923
SmiMI CAYNNNNRTG 2 cut(s) 51, 1113
SmlI CTYRAG 2 cut(s) 192, 839
SmoI CTYRAG 2 cut(s) 192, 839
SphI GCATGC 1 cut(s) 983
Sse9I AATT 7 cut(s) 318, 515, 612, 909, 1051, 1064, 1076
SseBI AGGCCT 1 cut(s) 934
SsiI CCGC 3 cut(s) 550, 802, 1089
SspMI CTAG 2 cut(s) 876, 888
StuI AGGCCT 1 cut(s) 934
StyD4I CCNGG 2 cut(s) 929, 1069
StyI CCWWGG 3 cut(s) 300, 692, 935
TaaI ACNGT 4 cut(s) 89, 359, 379, 499
TaiI ACGT 1 cut(s) 344
TaqI TCGA 3 cut(s) 237, 622, 1055
TasI AATT 7 cut(s) 318, 515, 612, 909, 1051, 1064, 1076
TauI GCSGC 1 cut(s) 1092
TfiI GAWTC 2 cut(s) 118, 365
Tru1I TTAA 2 cut(s) 170, 1182
Tru9I TTAA 2 cut(s) 170, 1182
TscAI CASTG 4 cut(s) 209, 565, 577, 742
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 2 cut(s) 524, 567
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 69, 261, 418
TspRI CASTG 4 cut(s) 209, 565, 577, 742
Van91I CCANNNNNTGG 3 cut(s) 275, 737, 936
VpaK11BI GGWCC 4 cut(s) 197, 266, 336, 923
XapI RAATTY 4 cut(s) 318, 515, 612, 1064
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 1 cut(s) 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 933
XmiI GTMKAC 1 cut(s) 622
XspI CTAG 2 cut(s) 876, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.