Rh4AG370400

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011785
Physical Location & Seq
Forward (+)
67801702 .. 67804238
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG370400.1

Sequence Viewer

Length: 999 bp
ATGGGTCCTCAGTGGACACCTCCAGCAATACAGGAAATCAGTATCGATGATTATGAAACTACAAAAAGGAGAGGTCCAGCTTTTGGGAAGTCATCCTTTAGACCTACCATGGAGGGAACCTCAGAAATTCAAGATACTGGGGGGTCCACGTCATCTCATTCAGACAGTAGTGAATCTGAACCCACGGTCAAGGCATCCCTATCTTGTCATCATACTTTCGCAAGTCGCCGTTCTTTCATGTCCAAACCTATATATCCCTTGTCATTTCCTCCACAAACTCCCCCCAGAGAGGCTTCTGACTTCACAGTTGCTGGGTTTCCTGAATTTGATGCTACCACTCCTCAGAGGGATGGCCACCGCTGGAGCAGTGCCAGCAGCAGTGTTGATTTTACTGATGTTTCTGAGTCATTTGAGGCAGAAATTTCTGGTCGACACTTTAGTAATATGTCTGAGGGGTTTAGATGTGGCTTGTGTGATAGGTTCCTTTCACGGAGATCACCTTGGAGTTCTCGTCGCATAGTCAGAAGTGGAGATATGCCAATCACTGGGGTTCTTTCTTGTTGTCATGTTTTCCATGCAGAGTGCTTGGAGCAAACAACACCGAAGATCCGCAAAAGTGACCCTCCTTGCCCCCTATGTGCCCGACTTGAGGAGGAAAACCTCTCTGAACAGCAAGGCTTTTCTAGATTGCGAGCTAGTTTTCCAAGACTTAGACCAATTAGTGATGATGGACCATCCAGGCCTTGGGGATGCGCTCAGGTGGGAGATTGTGTTGAAGGGGCTTTGCATGCTCCCCCACGCAATAGTATGCTGTTGCTTAATAGGAGTCGTATAAAGAAAAATCTTTCTTTGAAAAGCAATTCGAGCAAAGAATTTCCTGGTAAATTGAGAAAAAGCGGCGCTTACTATTCACAACATCTGAGTGGAAAATCAGTTGATCAGGGAGCAGTTGGATGCTCAAAGTCAAAGATGACAGCAGGGCCGAGTATTAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.48

Weight (kDa)

8.86

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 83, 545, 744
AccI GTMKAC 1 cut(s) 430
AciI CCGC 3 cut(s) 358, 610, 897
AclWI GGATC 1 cut(s) 601
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 4 cut(s) 126, 323, 420, 872
AfiI CCNNNNNNNGG 5 cut(s) 83, 289, 545, 649, 744
AgsI TTSAA 3 cut(s) 131, 776, 853
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 2 cut(s) 737, 877
AluBI AGCT 3 cut(s) 80, 695, 996
AluI AGCT 3 cut(s) 80, 695, 996
AlwI GGATC 1 cut(s) 601
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 3 cut(s) 352, 740, 980
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 4 cut(s) 126, 323, 420, 872
AspLEI GCGC 2 cut(s) 755, 902
AspS9I GGNCC 5 cut(s) 5, 74, 144, 731, 980
AsuHPI GGTGA 1 cut(s) 489
AvaII GGWCC 4 cut(s) 5, 74, 144, 731
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 1 cut(s) 354
BbvI GCAGC 1 cut(s) 387
BccI CCATC 3 cut(s) 344, 722, 742
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 2 cut(s) 739, 879
BclI TGATCA 1 cut(s) 937
BfaI CTAG 2 cut(s) 684, 696
BfoI RGCGCY 1 cut(s) 903
BisI GCNGC 2 cut(s) 376, 898
BlsI GCNGC 2 cut(s) 377, 899
Bme1390I CCNGG 2 cut(s) 739, 879
Bme18I GGWCC 4 cut(s) 5, 74, 144, 731
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 5 cut(s) 5, 74, 144, 731, 980
BmiI GGNNCC 4 cut(s) 6, 118, 145, 482
BmrFI CCNGG 2 cut(s) 739, 879
BmrI ACTGGG 2 cut(s) 147, 555
BmsI GCATC 4 cut(s) 203, 319, 740, 944
BmuI ACTGGG 2 cut(s) 147, 555
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BpmI CTGGAG 2 cut(s) 6, 382
Bpu10I CCTNAGC 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 668
Bsa29I ATCGAT 1 cut(s) 45
BsaJI CCNNGG 4 cut(s) 108, 183, 500, 743
BsaXI ACNNNNNCTCC 4 cut(s) 496, 526, 756, 786
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 289, 545, 649, 744
Bse1I ACTGG 2 cut(s) 142, 550
BseBI CCWGG 2 cut(s) 739, 879
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 4 cut(s) 108, 183, 500, 743
BseGI GGATG 6 cut(s) 92, 194, 355, 734, 755, 959
BseLI CCNNNNNNNGG 5 cut(s) 83, 289, 545, 649, 744
BseMII CTCAG 7 cut(s) 23, 135, 356, 393, 441, 770, 911
BseNI ACTGG 2 cut(s) 142, 550
BseRI GAGGAG 2 cut(s) 330, 665
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 1 cut(s) 387
BseYI CCCAGC 1 cut(s) 311
BshFI GGCC 3 cut(s) 354, 742, 982
BshVI ATCGAT 1 cut(s) 45
BslI CCNNNNNNNGG 5 cut(s) 83, 289, 545, 649, 744
BsnI GGCC 3 cut(s) 354, 742, 982
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 3 cut(s) 494, 606, 937
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 3 cut(s) 358, 610, 897
BspANI GGCC 3 cut(s) 354, 742, 982
BspCNI CTCAG 7 cut(s) 22, 134, 355, 394, 442, 769, 912
BspDI ATCGAT 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 6, 118, 145, 482
BspPI GGATC 1 cut(s) 601
BsrI ACTGG 2 cut(s) 142, 550
BssECI CCNNGG 4 cut(s) 108, 183, 500, 743
BssMI GATC 3 cut(s) 494, 606, 937
BssT1I CCWWGG 3 cut(s) 108, 500, 743
Bst2UI CCWGG 2 cut(s) 739, 879
Bst4CI ACNGT 3 cut(s) 167, 187, 307
BstC8I GCNNGC 3 cut(s) 373, 693, 789
BstDEI CTNAG 8 cut(s) 9, 121, 342, 402, 450, 710, 756, 920
BstDSI CCRYGG 2 cut(s) 108, 183
BstF5I GGATG 6 cut(s) 92, 194, 355, 734, 755, 959
BstH2I RGCGCY 1 cut(s) 903
BstHHI GCGC 2 cut(s) 755, 902
BstKTI GATC 3 cut(s) 497, 609, 940
BstMBI GATC 3 cut(s) 494, 606, 937
BstMWI GCNNNNNNNGC 3 cut(s) 372, 788, 864
BstNI CCWGG 2 cut(s) 739, 879
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 737, 877
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 3 cut(s) 354, 742, 982
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 108, 183
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 6 cut(s) 92, 194, 355, 734, 755, 959
BtsI GCAGTG 2 cut(s) 373, 385
BtsIMutI CAGTG 4 cut(s) 17, 373, 385, 543
Cac8I GCNNGC 3 cut(s) 373, 693, 789
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 2 cut(s) 755, 902
Cfr13I GGNCC 5 cut(s) 5, 74, 144, 731, 980
ClaI ATCGAT 1 cut(s) 45
CviAII CATG 5 cut(s) 109, 238, 566, 575, 788
DdeI CTNAG 8 cut(s) 9, 121, 342, 402, 450, 710, 756, 920
DpnI GATC 3 cut(s) 496, 608, 939
DpnII GATC 3 cut(s) 494, 606, 937
EaeI YGGCCR 1 cut(s) 352
Eco130I CCWWGG 3 cut(s) 108, 500, 743
Eco147I AGGCCT 1 cut(s) 742
Eco47I GGWCC 4 cut(s) 5, 74, 144, 731
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 737, 877
EcoT14I CCWWGG 3 cut(s) 108, 500, 743
ErhI CCWWGG 3 cut(s) 108, 500, 743
FaeI CATG 5 cut(s) 112, 241, 569, 578, 791
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 886, 918
FatI CATG 5 cut(s) 108, 237, 565, 574, 787
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 376, 898
FokI GGATG 6 cut(s) 79, 181, 362, 721, 762, 966
Fsp4HI GCNGC 2 cut(s) 376, 898
FspBI CTAG 2 cut(s) 684, 696
GlaI GCGC 2 cut(s) 754, 901
GluI GCNGC 2 cut(s) 376, 898
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 2 cut(s) 6, 382
HaeII RGCGCY 1 cut(s) 903
HaeIII GGCC 3 cut(s) 354, 742, 982
HhaI GCGC 2 cut(s) 755, 902
Hin1II CATG 5 cut(s) 112, 241, 569, 578, 791
Hin6I GCGC 2 cut(s) 753, 900
HinP1I GCGC 2 cut(s) 753, 900
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HinfI GANTC 3 cut(s) 173, 404, 826
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 3 cut(s) 15, 147, 431
Hpy188III TCNNGA 3 cut(s) 131, 320, 684
Hpy8I GTNNAC 3 cut(s) 15, 147, 431
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 1 cut(s) 770
HpyCH4III ACNGT 3 cut(s) 167, 187, 307
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 578, 787
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 788, 864
HpyF3I CTNAG 8 cut(s) 9, 121, 342, 402, 450, 710, 756, 920
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 5 cut(s) 112, 241, 569, 578, 791
HspAI GCGC 2 cut(s) 753, 900
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 3 cut(s) 494, 606, 937
LmnI GCTCC 4 cut(s) 363, 589, 796, 944
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 4 cut(s) 203, 319, 740, 944
MaeI CTAG 2 cut(s) 684, 696
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 617
MalI GATC 3 cut(s) 496, 608, 939
MboI GATC 3 cut(s) 494, 606, 937
MboII GAAGA 1 cut(s) 616
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 643
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 7 cut(s) 126, 323, 420, 717, 859, 872, 884
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 2 cut(s) 413, 835
MmeI TCCRAC 1 cut(s) 931
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 2 cut(s) 819, 990
MslI CAYNNNNRTG 1 cut(s) 921
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 739, 879
MvaI CCWGG 2 cut(s) 739, 879
MwoI GCNNNNNNNGC 3 cut(s) 372, 788, 864
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 494, 606, 937
NlaIII CATG 5 cut(s) 112, 241, 569, 578, 791
NlaIV GGNNCC 4 cut(s) 6, 118, 145, 482
NmuCI GTSAC 1 cut(s) 617
NspI RCATGY 1 cut(s) 791
PaeI GCATGC 1 cut(s) 791
PceI AGGCCT 1 cut(s) 742
PfeI GAWTC 1 cut(s) 173
PflMI CCANNNNNTGG 3 cut(s) 83, 545, 744
PkrI GCNGC 2 cut(s) 377, 899
PleI GAGTC 2 cut(s) 412, 834
PpsI GAGTC 2 cut(s) 412, 834
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 2 cut(s) 737, 877
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 2 cut(s) 737, 877
PspN4I GGNNCC 4 cut(s) 6, 118, 145, 482
PspPI GGNCC 5 cut(s) 5, 74, 144, 731, 980
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 606
RseI CAYNNNNRTG 1 cut(s) 921
SalI GTCGAC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 819, 990
SatI GCNGC 2 cut(s) 376, 898
Sau3AI GATC 3 cut(s) 494, 606, 937
Sau96I GGNCC 5 cut(s) 5, 74, 144, 731, 980
SchI GAGTC 2 cut(s) 413, 835
ScrFI CCNGG 2 cut(s) 739, 879
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 4 cut(s) 203, 319, 740, 944
SinI GGWCC 4 cut(s) 5, 74, 144, 731
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
SphI GCATGC 1 cut(s) 791
Sse9I AATT 7 cut(s) 126, 323, 420, 717, 859, 872, 884
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 3 cut(s) 358, 610, 897
SspMI CTAG 2 cut(s) 684, 696
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 2 cut(s) 737, 877
StyI CCWWGG 3 cut(s) 108, 500, 743
TaaI ACNGT 3 cut(s) 167, 187, 307
TaiI ACGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 45, 430, 863
TasI AATT 7 cut(s) 126, 323, 420, 717, 859, 872, 884
TauI GCSGC 1 cut(s) 900
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 819, 990
Tru9I TTAA 2 cut(s) 819, 990
TscAI CASTG 4 cut(s) 17, 373, 385, 550
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 2 cut(s) 69, 226
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 4 cut(s) 17, 373, 385, 550
Van91I CCANNNNNTGG 3 cut(s) 83, 545, 744
VpaK11BI GGWCC 4 cut(s) 5, 74, 144, 731
XapI RAATTY 4 cut(s) 126, 323, 420, 872
XbaI TCTAGA 1 cut(s) 683
XceI RCATGY 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmiI GTMKAC 1 cut(s) 430
XspI CTAG 2 cut(s) 684, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.