RLG00000006261

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011785
Physical Location & Seq
Reverse (-)
5713738 .. 5716211
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006261

Sequence Viewer

Length: 1251 bp
ATGAGTGGCACTTGGCATAAGTCCCTAACCTGTGTCGGGAATGTTGATTTCATGCCACATGAGTCACATACGGCCAGTAGGGACTGGTCCGTTGGTCCAGACGAGCCTTGTTGGCGAACTAATACAAGCTTTTCTCCACCTCCTTCGAGATGGGATTTTCGATTCCAATCTGAAGAACTGCAATATGGTTTGCATGATGGTGTGCAACTATATGGTTCTTCTACTTCTTCAAACAGTAGAGGAAGTAGGGGATGGGTGAGAGGCAATCATCTCTATAATCATCATTACTCTGCATCTGATGGTGCTGGGCTGTTGTTAAGTAGTTCGTCTGACCATTCTCAAGGTCCTCAGTGGACACCTCCAGCAATACAGGAAATCAGTATCGATGATTATGAAACTACAAAAAGGAGAGGTCCAGCTTTTGGGAAGTCATCCTTTAGACCTACCATGGAGGGAGCCTCAGAAATTCAAGATACTGGGGGATCCACGTCATCTCGTTCAGACAGTAGTGAATCTGAACCCACGGTCAAGGCATCCCTATCTTGTCATCATACTTTCGCAAGTCGCCGTTCTTTCATGTCCAAACCTATATATCCCTTGTCATTTCCTCCACAAACTCCCCCCAGAGAGGCTTCTGACTTCACAGTTACTGGGTTTCCAGAATTTGATGCTGCCACTCAGAGAGATGGCCACCGCTGGAGCAGTGCCAGCAGCAGTGTTGATTTTACTGATGTTTCTGAGTCATTTGAGAGATCACCTTGGAGTTCTCGTCGCATAGTCAGAAGTGGAGATATGCCAATCACCGGGGTTCTTTCTTGTTGTCATGTTTTCCATGCAGAGTGCTTGGAGCAAACAACACCGAAGATCCGCAAAAGTGACCCTCCCTGCCCCCTATGTGCCCGACTTGAGGAGGAAAATCTCTCTGAACAGCAAAGCTTTTCTAGATTGCGAGCTAGTTTTCCAAGACTTAGACCAATTAGTGATGATGGACCATCCAGGCCTTGGGGATGCGCTCAGGTGGGAGATTGTGTTGAAGGGGCTTTGCATGCTCCCCCACGCAATAGTATGCTGTTGCTCAATAGAAGTCGCATAAAGAAAAATCTTTCTTTGAAAAGCAATTCGAGCAAAGAATTTCCTGGTAAATTGAGAAAAAGCGGTGCTTACTATTCACAACATCCGAGTGGAAAATCAGTTGATCAGGGAGCAGTTGGATGCTCAAAGTCAAAGATGACAGCAGGGCCGAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

45.79

Weight (kDa)

8.26

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 422, 1002
AciI CCGC 3 cut(s) 694, 868, 1155
AclWI GGATC 3 cut(s) 477, 490, 859
AcoI YGGCCR 2 cut(s) 72, 688
AcsI RAATTY 3 cut(s) 465, 662, 1130
AcuI CTGAAG 1 cut(s) 192
AfiI CCNNNNNNNGG 6 cut(s) 36, 422, 628, 803, 907, 1002
AgsI TTSAA 4 cut(s) 231, 470, 1034, 1111
AjiI CACGTC 1 cut(s) 489
AjnI CCWGG 2 cut(s) 995, 1135
AluBI AGCT 4 cut(s) 129, 419, 936, 953
AluI AGCT 4 cut(s) 129, 419, 936, 953
AlwI GGATC 3 cut(s) 477, 490, 859
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 4 cut(s) 72, 688, 998, 1238
ApeKI GCWGC 2 cut(s) 671, 711
ApoI RAATTY 3 cut(s) 465, 662, 1130
AspLEI GCGC 1 cut(s) 1013
AspS9I GGNCC 6 cut(s) 87, 95, 344, 413, 989, 1238
AsuC2I CCSGG 1 cut(s) 805
AsuHPI GGTGA 3 cut(s) 268, 747, 793
AvaII GGWCC 5 cut(s) 87, 95, 344, 413, 989
BaeGI GKGCMC 1 cut(s) 901
BalI TGGCCA 1 cut(s) 690
BamHI GGATCC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 658, 723
BccI CCATC 7 cut(s) 144, 191, 246, 293, 680, 980, 1000
BceAI ACGGC 2 cut(s) 87, 552
BciT130I CCWGG 2 cut(s) 997, 1137
BclI TGATCA 1 cut(s) 1195
BcnI CCSGG 1 cut(s) 805
BfaI CTAG 2 cut(s) 942, 954
BglI GCCNNNNNGGC 1 cut(s) 112
BisI GCNGC 2 cut(s) 672, 712
BlsI GCNGC 2 cut(s) 673, 713
Bme1390I CCNGG 3 cut(s) 805, 997, 1137
Bme18I GGWCC 5 cut(s) 87, 95, 344, 413, 989
BmgBI CACGTC 1 cut(s) 489
BmgT120I GGNCC 6 cut(s) 87, 95, 344, 413, 989, 1238
BmiI GGNNCC 2 cut(s) 457, 484
BmrFI CCNGG 3 cut(s) 805, 997, 1137
BmrI ACTGGG 2 cut(s) 486, 660
BmsI GCATC 5 cut(s) 302, 542, 658, 998, 1202
BmuI ACTGGG 2 cut(s) 486, 660
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpmI CTGGAG 2 cut(s) 345, 718
Bpu10I CCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 2 cut(s) 324, 926
BpuMI CCSGG 1 cut(s) 805
Bsa29I ATCGAT 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 166
BsaJI CCNNGG 5 cut(s) 447, 522, 758, 804, 1001
BsaXI ACNNNNNCTCC 4 cut(s) 754, 784, 1014, 1044
Bsc4I CCNNNNNNNGG 6 cut(s) 36, 422, 628, 803, 907, 1002
Bse1I ACTGG 4 cut(s) 75, 89, 481, 655
Bse8I GATNNNNATC 1 cut(s) 166
BseBI CCWGG 2 cut(s) 997, 1137
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 5 cut(s) 447, 522, 758, 804, 1001
BseGI GGATG 7 cut(s) 257, 431, 533, 992, 1013, 1174, 1217
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 6 cut(s) 36, 422, 628, 803, 907, 1002
BseMII CTCAG 5 cut(s) 362, 474, 692, 729, 1028
BseNI ACTGG 4 cut(s) 75, 89, 481, 655
BseRI GAGGAG 1 cut(s) 923
BseSI GKGCMC 1 cut(s) 901
BseXI GCAGC 2 cut(s) 658, 723
BseYI CCCAGC 1 cut(s) 305
BshFI GGCC 4 cut(s) 74, 690, 1000, 1240
BshVI ATCGAT 1 cut(s) 384
BsiSI CCGG 1 cut(s) 804
BslFI GGGAC 2 cut(s) 7, 95
BslI CCNNNNNNNGG 6 cut(s) 36, 422, 628, 803, 907, 1002
BsmFI GGGAC 2 cut(s) 7, 95
BsnI GGCC 4 cut(s) 74, 690, 1000, 1240
Bsp1286I GDGCHC 1 cut(s) 901
Bsp143I GATC 4 cut(s) 482, 752, 864, 1195
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 3 cut(s) 694, 868, 1155
BspANI GGCC 4 cut(s) 74, 690, 1000, 1240
BspCNI CTCAG 5 cut(s) 361, 473, 691, 730, 1027
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 457, 484
BspPI GGATC 3 cut(s) 477, 490, 859
BsrI ACTGG 4 cut(s) 75, 89, 481, 655
BssECI CCNNGG 5 cut(s) 447, 522, 758, 804, 1001
BssMI GATC 4 cut(s) 482, 752, 864, 1195
BssT1I CCWWGG 3 cut(s) 447, 758, 1001
Bst2UI CCWGG 2 cut(s) 997, 1137
Bst4CI ACNGT 4 cut(s) 236, 506, 526, 646
BstC8I GCNNGC 3 cut(s) 709, 951, 1047
BstDEI CTNAG 6 cut(s) 348, 460, 678, 738, 968, 1014
BstDSI CCRYGG 2 cut(s) 447, 522
BstF5I GGATG 7 cut(s) 257, 431, 533, 992, 1013, 1174, 1217
BstHHI GCGC 1 cut(s) 1013
BstKTI GATC 4 cut(s) 485, 755, 867, 1198
BstMBI GATC 4 cut(s) 482, 752, 864, 1195
BstMWI GCNNNNNNNGC 4 cut(s) 112, 708, 1046, 1122
BstNI CCWGG 2 cut(s) 997, 1137
BstNSI RCATGY 1 cut(s) 1049
BstSCI CCNGG 3 cut(s) 803, 995, 1135
BstSLI GKGCMC 1 cut(s) 901
BstV1I GCAGC 2 cut(s) 658, 723
BstX2I RGATCY 2 cut(s) 482, 864
BstYI RGATCY 2 cut(s) 482, 864
Bsu15I ATCGAT 1 cut(s) 384
BsuRI GGCC 4 cut(s) 74, 690, 1000, 1240
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 2 cut(s) 447, 522
BtrI CACGTC 1 cut(s) 489
BtsCI GGATG 7 cut(s) 257, 431, 533, 992, 1013, 1174, 1217
BtsI GCAGTG 2 cut(s) 709, 721
BtsIMutI CAGTG 3 cut(s) 356, 709, 721
Cac8I GCNNGC 3 cut(s) 709, 951, 1047
CaiI CAGNNNCTG 1 cut(s) 650
CfoI GCGC 1 cut(s) 1013
Cfr13I GGNCC 6 cut(s) 87, 95, 344, 413, 989, 1238
ClaI ATCGAT 1 cut(s) 384
CviAII CATG 8 cut(s) 52, 59, 194, 448, 577, 824, 833, 1046
DdeI CTNAG 6 cut(s) 348, 460, 678, 738, 968, 1014
DpnI GATC 4 cut(s) 484, 754, 866, 1197
DpnII GATC 4 cut(s) 482, 752, 864, 1195
EaeI YGGCCR 2 cut(s) 72, 688
Eco130I CCWWGG 3 cut(s) 447, 758, 1001
Eco147I AGGCCT 1 cut(s) 1000
Eco47I GGWCC 5 cut(s) 87, 95, 344, 413, 989
Eco57I CTGAAG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 995, 1135
EcoT14I CCWWGG 3 cut(s) 447, 758, 1001
ErhI CCWWGG 3 cut(s) 447, 758, 1001
FaeI CATG 8 cut(s) 55, 62, 197, 451, 580, 827, 836, 1049
FalI AAGNNNNNCTT 4 cut(s) 419, 451, 1144, 1176
FaqI GGGAC 2 cut(s) 7, 95
FatI CATG 8 cut(s) 51, 58, 193, 447, 576, 823, 832, 1045
FbaI TGATCA 1 cut(s) 1195
Fnu4HI GCNGC 2 cut(s) 672, 712
FokI GGATG 7 cut(s) 264, 418, 520, 979, 1020, 1161, 1224
Fsp4HI GCNGC 2 cut(s) 672, 712
FspBI CTAG 2 cut(s) 942, 954
GlaI GCGC 1 cut(s) 1012
GluI GCNGC 2 cut(s) 672, 712
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 2 cut(s) 345, 718
HaeIII GGCC 4 cut(s) 74, 690, 1000, 1240
HapII CCGG 1 cut(s) 804
HhaI GCGC 1 cut(s) 1013
Hin1II CATG 8 cut(s) 55, 62, 197, 451, 580, 827, 836, 1049
Hin6I GCGC 1 cut(s) 1011
HinP1I GCGC 1 cut(s) 1011
HindIII AAGCTT 2 cut(s) 127, 934
HinfI GANTC 4 cut(s) 62, 162, 512, 740
HpaII CCGG 1 cut(s) 804
HphI GGTGA 3 cut(s) 268, 747, 793
Hpy166II GTNNAC 1 cut(s) 354
Hpy188III TCNNGA 6 cut(s) 37, 98, 147, 470, 659, 942
Hpy8I GTNNAC 1 cut(s) 354
Hpy99I CGWCG 1 cut(s) 774
HpyAV CCTTC 2 cut(s) 153, 1028
HpyCH4III ACNGT 4 cut(s) 236, 506, 526, 646
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 6 cut(s) 181, 193, 205, 293, 836, 1045
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 708, 1046, 1122
HpyF3I CTNAG 6 cut(s) 348, 460, 678, 738, 968, 1014
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 8 cut(s) 55, 62, 197, 451, 580, 827, 836, 1049
HspAI GCGC 1 cut(s) 1011
Ksp22I TGATCA 1 cut(s) 1195
Kzo9I GATC 4 cut(s) 482, 752, 864, 1195
LmnI GCTCC 5 cut(s) 455, 699, 847, 1054, 1202
Lsp1109I GCAGC 2 cut(s) 658, 723
LweI GCATC 5 cut(s) 302, 542, 658, 998, 1202
MaeI CTAG 2 cut(s) 942, 954
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 3 cut(s) 63, 646, 875
MalI GATC 4 cut(s) 484, 754, 866, 1197
MboI GATC 4 cut(s) 482, 752, 864, 1195
MboII GAAGA 4 cut(s) 185, 210, 219, 874
MflI RGATCY 2 cut(s) 482, 864
MhlI GDGCHC 1 cut(s) 901
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 6 cut(s) 465, 662, 975, 1117, 1130, 1142
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 2 cut(s) 71, 749
MmeI TCCRAC 1 cut(s) 1189
Mox20I TGGCCA 1 cut(s) 690
MscI TGGCCA 1 cut(s) 690
MseI TTAA 2 cut(s) 317, 1249
MslI CAYNNNNRTG 2 cut(s) 198, 1179
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 696
MspI CCGG 1 cut(s) 804
MspR9I CCNGG 3 cut(s) 805, 997, 1137
MvaI CCWGG 2 cut(s) 997, 1137
MwoI GCNNNNNNNGC 4 cut(s) 112, 708, 1046, 1122
NciI CCSGG 1 cut(s) 805
NcoI CCATGG 1 cut(s) 447
NdeII GATC 4 cut(s) 482, 752, 864, 1195
NlaIII CATG 8 cut(s) 55, 62, 197, 451, 580, 827, 836, 1049
NlaIV GGNNCC 2 cut(s) 457, 484
NmuCI GTSAC 2 cut(s) 63, 875
NspI RCATGY 1 cut(s) 1049
PaeI GCATGC 1 cut(s) 1049
PceI AGGCCT 1 cut(s) 1000
PfeI GAWTC 2 cut(s) 162, 512
PflMI CCANNNNNTGG 2 cut(s) 422, 1002
PkrI GCNGC 2 cut(s) 673, 713
PleI GAGTC 2 cut(s) 70, 748
PpsI GAGTC 2 cut(s) 70, 748
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 995, 1135
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 995, 1135
PspN4I GGNNCC 2 cut(s) 457, 484
PspPI GGNCC 6 cut(s) 87, 95, 344, 413, 989, 1238
PspPPI RGGWCCY 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 2 cut(s) 482, 864
RseI CAYNNNNRTG 2 cut(s) 198, 1179
SaqAI TTAA 2 cut(s) 317, 1249
SatI GCNGC 2 cut(s) 672, 712
Sau3AI GATC 4 cut(s) 482, 752, 864, 1195
Sau96I GGNCC 6 cut(s) 87, 95, 344, 413, 989, 1238
SchI GAGTC 2 cut(s) 71, 749
ScrFI CCNGG 3 cut(s) 805, 997, 1137
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 5 cut(s) 302, 542, 658, 998, 1202
SinI GGWCC 5 cut(s) 87, 95, 344, 413, 989
SmiMI CAYNNNNRTG 2 cut(s) 198, 1179
SmlI CTYRAG 2 cut(s) 339, 905
SmoI CTYRAG 2 cut(s) 339, 905
SphI GCATGC 1 cut(s) 1049
Sse9I AATT 6 cut(s) 465, 662, 975, 1117, 1130, 1142
SseBI AGGCCT 1 cut(s) 1000
SsiI CCGC 3 cut(s) 694, 868, 1155
SspMI CTAG 2 cut(s) 942, 954
StuI AGGCCT 1 cut(s) 1000
StyD4I CCNGG 3 cut(s) 803, 995, 1135
StyI CCWWGG 3 cut(s) 447, 758, 1001
TaaI ACNGT 4 cut(s) 236, 506, 526, 646
TaiI ACGT 1 cut(s) 491
TaqI TCGA 4 cut(s) 146, 160, 384, 1121
TasI AATT 6 cut(s) 465, 662, 975, 1117, 1130, 1142
TfiI GAWTC 2 cut(s) 162, 512
Tru1I TTAA 2 cut(s) 317, 1249
Tru9I TTAA 2 cut(s) 317, 1249
TscAI CASTG 3 cut(s) 356, 709, 721
TseFI GTSAC 2 cut(s) 63, 875
TseI GCWGC 2 cut(s) 671, 711
Tsp45I GTSAC 2 cut(s) 63, 875
TspDTI ATGAA 3 cut(s) 40, 408, 565
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 3 cut(s) 356, 709, 721
Van91I CCANNNNNTGG 2 cut(s) 422, 1002
VpaK11BI GGWCC 5 cut(s) 87, 95, 344, 413, 989
XapI RAATTY 3 cut(s) 465, 662, 1130
XbaI TCTAGA 1 cut(s) 941
XceI RCATGY 1 cut(s) 1049
XcmI CCANNNNNNNNNTGG 1 cut(s) 999
XspI CTAG 2 cut(s) 942, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.