RchiOBHm_Chr4g0439521

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011785
Physical Location & Seq
Forward (+)
61927433 .. 61931522
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40757

Sequence Viewer

Length: 957 bp
ATGATTATGAAACTACAAAAAGGAGAGTTGGGTCCAGCTTTTGGGAAGTCATCCTTTAGACCTACCATGGAGGGAACCTCAGAAATTCAAGATACTGGGGGGTCCACGTCATCTCATTCAGACAGTAGTGAATCTGAACCCACGGTCAAGGCATCCCTATCTTGTCATCATACTTTCGCAAGTCGCCGTTCTTTCATGTCCAAACCTATATATCCCTTGTCATTTCCTCCACAAACTCCCCCCAGAGAGGCTTCTGACTTCACAGTTGCTGGGTTTCCTGAATTTGATGCTACCACTCCTCAGAGGGATGGCCACCGCTGGAGCAGTGCCAGCAGCAGTGTTGATTTTACTGATGTTTCTGAGTCATTTGAGGCAGAAATTTCTGGTCGACACTTTAGTAATATGTCTGAGGGGTTTAGATGTGGCTTGTGTGATAGGTTCCTTTCACGGAGATCACCTTGGAGTTCTCGTCGCATAGTCAGAAGTGGAGATATGCCAATCACTGGGGTTCTTTCTTGTTGTCATGTTTTCCATGCAGAGTGCTTGGAGCAAACAACACCGAAGATCCGCAAAAGTGACCCTCCTTGCCCCCTATGTGCCCGACTTGAGGAGGAAAACCTCTCTGAACAGCAAGGCTTTTCTAGATTGCGAGCTAGTTTTCCAAGACTTAGACCAATTAGTGATGATGGACCATCCAGGCCTTGGGGATGCGCTCAGGTGGGAGATTGTGTTGAAGGGGCTTTGCATGCTCCCCCACGCAATAGTATGCTGTTGCTTAATAGGAGTCGTATAAAGAAAAATCTTTCTTTGAAAAGCAATTCGAGCAAAGAATTTCCTGGTAAATTGAGAAAAAGCGGCGCTTACTATTCACAACATCTGAGTGGAAAATCAGTTGATCAGGGAGCAGTTGGATGCTCAAAGTCAAAGATGACAGCAGGGCCGAGTATTAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

34.84

Weight (kDa)

9.06

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 41, 503, 702
AccI GTMKAC 1 cut(s) 388
AciI CCGC 3 cut(s) 316, 568, 855
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 4 cut(s) 84, 281, 378, 830
AfiI CCNNNNNNNGG 5 cut(s) 41, 247, 503, 607, 702
AgsI TTSAA 3 cut(s) 89, 734, 811
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 2 cut(s) 695, 835
AluBI AGCT 3 cut(s) 38, 653, 954
AluI AGCT 3 cut(s) 38, 653, 954
AlwI GGATC 1 cut(s) 559
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 3 cut(s) 310, 698, 938
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 4 cut(s) 84, 281, 378, 830
AspLEI GCGC 2 cut(s) 713, 860
AspS9I GGNCC 4 cut(s) 32, 102, 689, 938
AsuHPI GGTGA 1 cut(s) 447
AvaII GGWCC 3 cut(s) 32, 102, 689
BaeGI GKGCMC 1 cut(s) 601
BalI TGGCCA 1 cut(s) 312
BbvI GCAGC 1 cut(s) 345
BccI CCATC 3 cut(s) 302, 680, 700
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 2 cut(s) 697, 837
BclI TGATCA 1 cut(s) 895
BfaI CTAG 2 cut(s) 642, 654
BfoI RGCGCY 1 cut(s) 861
BisI GCNGC 2 cut(s) 334, 856
BlsI GCNGC 2 cut(s) 335, 857
Bme1390I CCNGG 2 cut(s) 697, 837
Bme18I GGWCC 3 cut(s) 32, 102, 689
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 4 cut(s) 32, 102, 689, 938
BmiI GGNNCC 4 cut(s) 33, 76, 103, 440
BmrFI CCNGG 2 cut(s) 697, 837
BmrI ACTGGG 2 cut(s) 105, 513
BmsI GCATC 4 cut(s) 161, 277, 698, 902
BmuI ACTGGG 2 cut(s) 105, 513
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 340
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 626
BsaJI CCNNGG 4 cut(s) 66, 141, 458, 701
BsaXI ACNNNNNCTCC 4 cut(s) 454, 484, 714, 744
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 247, 503, 607, 702
Bse1I ACTGG 2 cut(s) 100, 508
BseBI CCWGG 2 cut(s) 697, 837
BseDI CCNNGG 4 cut(s) 66, 141, 458, 701
BseGI GGATG 6 cut(s) 50, 152, 313, 692, 713, 917
BseLI CCNNNNNNNGG 5 cut(s) 41, 247, 503, 607, 702
BseMII CTCAG 6 cut(s) 93, 314, 351, 399, 728, 869
BseNI ACTGG 2 cut(s) 100, 508
BseRI GAGGAG 2 cut(s) 288, 623
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 1 cut(s) 345
BseYI CCCAGC 1 cut(s) 269
BshFI GGCC 3 cut(s) 312, 700, 940
BslI CCNNNNNNNGG 5 cut(s) 41, 247, 503, 607, 702
BsnI GGCC 3 cut(s) 312, 700, 940
Bsp1286I GDGCHC 1 cut(s) 601
Bsp143I GATC 3 cut(s) 452, 564, 895
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 3 cut(s) 316, 568, 855
BspANI GGCC 3 cut(s) 312, 700, 940
BspCNI CTCAG 6 cut(s) 92, 313, 352, 400, 727, 870
BspLI GGNNCC 4 cut(s) 33, 76, 103, 440
BspPI GGATC 1 cut(s) 559
BsrI ACTGG 2 cut(s) 100, 508
BssECI CCNNGG 4 cut(s) 66, 141, 458, 701
BssMI GATC 3 cut(s) 452, 564, 895
BssT1I CCWWGG 3 cut(s) 66, 458, 701
Bst2UI CCWGG 2 cut(s) 697, 837
Bst4CI ACNGT 3 cut(s) 125, 145, 265
BstC8I GCNNGC 3 cut(s) 331, 651, 747
BstDEI CTNAG 7 cut(s) 79, 300, 360, 408, 668, 714, 878
BstDSI CCRYGG 2 cut(s) 66, 141
BstF5I GGATG 6 cut(s) 50, 152, 313, 692, 713, 917
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 2 cut(s) 713, 860
BstKTI GATC 3 cut(s) 455, 567, 898
BstMBI GATC 3 cut(s) 452, 564, 895
BstMWI GCNNNNNNNGC 3 cut(s) 330, 746, 822
BstNI CCWGG 2 cut(s) 697, 837
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 2 cut(s) 695, 835
BstSLI GKGCMC 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BsuRI GGCC 3 cut(s) 312, 700, 940
BtgI CCRYGG 2 cut(s) 66, 141
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 6 cut(s) 50, 152, 313, 692, 713, 917
BtsI GCAGTG 2 cut(s) 331, 343
BtsIMutI CAGTG 3 cut(s) 331, 343, 501
Cac8I GCNNGC 3 cut(s) 331, 651, 747
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 2 cut(s) 713, 860
Cfr13I GGNCC 4 cut(s) 32, 102, 689, 938
CviAII CATG 5 cut(s) 67, 196, 524, 533, 746
DdeI CTNAG 7 cut(s) 79, 300, 360, 408, 668, 714, 878
DpnI GATC 3 cut(s) 454, 566, 897
DpnII GATC 3 cut(s) 452, 564, 895
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 3 cut(s) 66, 458, 701
Eco147I AGGCCT 1 cut(s) 700
Eco47I GGWCC 3 cut(s) 32, 102, 689
EcoRII CCWGG 2 cut(s) 695, 835
EcoT14I CCWWGG 3 cut(s) 66, 458, 701
ErhI CCWWGG 3 cut(s) 66, 458, 701
FaeI CATG 5 cut(s) 70, 199, 527, 536, 749
FalI AAGNNNNNCTT 4 cut(s) 38, 70, 844, 876
FatI CATG 5 cut(s) 66, 195, 523, 532, 745
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 334, 856
FokI GGATG 6 cut(s) 37, 139, 320, 679, 720, 924
Fsp4HI GCNGC 2 cut(s) 334, 856
FspBI CTAG 2 cut(s) 642, 654
GlaI GCGC 2 cut(s) 712, 859
GluI GCNGC 2 cut(s) 334, 856
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 340
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 3 cut(s) 312, 700, 940
HhaI GCGC 2 cut(s) 713, 860
Hin1II CATG 5 cut(s) 70, 199, 527, 536, 749
Hin6I GCGC 2 cut(s) 711, 858
HinP1I GCGC 2 cut(s) 711, 858
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HinfI GANTC 3 cut(s) 131, 362, 784
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 2 cut(s) 105, 389
Hpy188III TCNNGA 3 cut(s) 89, 278, 642
Hpy8I GTNNAC 2 cut(s) 105, 389
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 1 cut(s) 728
HpyCH4III ACNGT 3 cut(s) 125, 145, 265
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 536, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 746, 822
HpyF3I CTNAG 7 cut(s) 79, 300, 360, 408, 668, 714, 878
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 5 cut(s) 70, 199, 527, 536, 749
HspAI GCGC 2 cut(s) 711, 858
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 3 cut(s) 452, 564, 895
LmnI GCTCC 4 cut(s) 321, 547, 754, 902
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 4 cut(s) 161, 277, 698, 902
MaeI CTAG 2 cut(s) 642, 654
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 575
MalI GATC 3 cut(s) 454, 566, 897
MboI GATC 3 cut(s) 452, 564, 895
MboII GAAGA 1 cut(s) 574
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 601
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 7 cut(s) 84, 281, 378, 675, 817, 830, 842
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 2 cut(s) 371, 793
MmeI TCCRAC 1 cut(s) 889
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 2 cut(s) 777, 948
MslI CAYNNNNRTG 1 cut(s) 879
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 697, 837
MvaI CCWGG 2 cut(s) 697, 837
MwoI GCNNNNNNNGC 3 cut(s) 330, 746, 822
NcoI CCATGG 1 cut(s) 66
NdeII GATC 3 cut(s) 452, 564, 895
NlaIII CATG 5 cut(s) 70, 199, 527, 536, 749
NlaIV GGNNCC 4 cut(s) 33, 76, 103, 440
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 749
PaeI GCATGC 1 cut(s) 749
PceI AGGCCT 1 cut(s) 700
PfeI GAWTC 1 cut(s) 131
PflMI CCANNNNNTGG 3 cut(s) 41, 503, 702
PkrI GCNGC 2 cut(s) 335, 857
PleI GAGTC 2 cut(s) 370, 792
PpsI GAGTC 2 cut(s) 370, 792
Psp6I CCWGG 2 cut(s) 695, 835
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 2 cut(s) 695, 835
PspN4I GGNNCC 4 cut(s) 33, 76, 103, 440
PspPI GGNCC 4 cut(s) 32, 102, 689, 938
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 564
RseI CAYNNNNRTG 1 cut(s) 879
SalI GTCGAC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 777, 948
SatI GCNGC 2 cut(s) 334, 856
Sau3AI GATC 3 cut(s) 452, 564, 895
Sau96I GGNCC 4 cut(s) 32, 102, 689, 938
SchI GAGTC 2 cut(s) 371, 793
ScrFI CCNGG 2 cut(s) 697, 837
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 4 cut(s) 161, 277, 698, 902
SinI GGWCC 3 cut(s) 32, 102, 689
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SphI GCATGC 1 cut(s) 749
Sse9I AATT 7 cut(s) 84, 281, 378, 675, 817, 830, 842
SseBI AGGCCT 1 cut(s) 700
SsiI CCGC 3 cut(s) 316, 568, 855
SspMI CTAG 2 cut(s) 642, 654
StuI AGGCCT 1 cut(s) 700
StyD4I CCNGG 2 cut(s) 695, 835
StyI CCWWGG 3 cut(s) 66, 458, 701
TaaI ACNGT 3 cut(s) 125, 145, 265
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 388, 821
TasI AATT 7 cut(s) 84, 281, 378, 675, 817, 830, 842
TauI GCSGC 1 cut(s) 858
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 777, 948
Tru9I TTAA 2 cut(s) 777, 948
TscAI CASTG 3 cut(s) 331, 343, 508
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 2 cut(s) 23, 184
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 3 cut(s) 331, 343, 508
Van91I CCANNNNNTGG 3 cut(s) 41, 503, 702
VpaK11BI GGWCC 3 cut(s) 32, 102, 689
XapI RAATTY 4 cut(s) 84, 281, 378, 830
XbaI TCTAGA 1 cut(s) 641
XceI RCATGY 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 388
XspI CTAG 2 cut(s) 642, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.