FvH4_4g31130

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011785
Physical Location & Seq
Forward (+)
30401939 .. 30405479
3541 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31130.t1

Sequence Viewer

Length: 891 bp
ATGGAGGGAACCTCAGAAATTCAAGATACTAGGGGGTCCACCTCATCTCGTTCAGACAGTAGTGAATCTGAAGCCACGATCAAAGCATCCCTATCTTCTCATCATACTTTCGCAAGTCGCCGTTCTTTCATGTCCAAACCTATATATCCCTTGTCATTTCCTTCACAAACTCTTCCCAGAGAGGCGTCTGACTTCACAGTTGCTGGGTCTCCTGACTTTGATGCAGCCACTCCTCAAAGAGATGGCCACCGCTGGAGCAGTGCCAGTAGCAGCGTTGATTTTACTGATGTTTCAGAGTCATTTGAGGCAGAAATTTCTATTAGACACTTTAGTAATATGTCTGAAGGGTTTAGATGTGGCTTGTGTGATAGGTTTCTTTCACAAAGATCACCTTGGAGTTCTCGTCGCATAGTCAGAAGTGGAGATATGCCAATCGCCGGGGTTCTTTCTTGTTGTCATGTTTTCCATGCAGAGTGCTTGGAGCAAACAACACCCAAGACACGCAAAAGTGACCCTCCCTGCCCCCTATGTGCCCGACTTGAGGAGGAAAATCTCTCTGAACAGCAGAGCTTTTCTAGATTGCGAGCTAATTTTCCAAGACTTAGACCAATTAGTGATGATGGACCATCCAGACCTTGGGGATGCGCTCAGGTGGGAGATTGTGTCGAAGGGGCTTTGCATGCTCCCCCACGTAATAGTATGCTGTTGCTCAATAGGAGTCGTATAAAGAAAAATCTCTCTTTGAAAGGCAATTCAAGCAAAGAATTTCCTGGTAAATTGAGAAGAAGCGCCACTTACGCTACACAACATTTGAGTGGAAAATCGGTCGATCAGGGAGCAATTGGATGCTCAAAGTCAAAGATGACAGCAGGGCTGAGTATTAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.46

Weight (kDa)

8.96

Isoelectric Point (pI)

66.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 636
AciI CCGC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 3 cut(s) 18, 312, 764
AcuI CTGAAG 2 cut(s) 90, 363
AcyI GRCGYC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 437, 541, 636
AgsI TTSAA 3 cut(s) 23, 745, 756
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 3 cut(s) 570, 587, 888
AluI AGCT 3 cut(s) 570, 587, 888
Alw26I GTCTC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 224, 270
ApoI RAATTY 3 cut(s) 18, 312, 764
AspLEI GCGC 2 cut(s) 647, 791
AspS9I GGNCC 2 cut(s) 36, 623
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 381
AvaII GGWCC 2 cut(s) 36, 623
BaeGI GKGCMC 1 cut(s) 535
BalI TGGCCA 1 cut(s) 246
BbvI GCAGC 2 cut(s) 236, 282
BccI CCATC 3 cut(s) 236, 614, 634
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 771
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 2 cut(s) 30, 576
BfoI RGCGCY 1 cut(s) 792
BisI GCNGC 2 cut(s) 225, 271
BlsI GCNGC 2 cut(s) 226, 272
Bme1390I CCNGG 2 cut(s) 439, 771
Bme18I GGWCC 2 cut(s) 36, 623
BmgT120I GGNCC 2 cut(s) 36, 623
BmiI GGNNCC 2 cut(s) 10, 37
BmrFI CCNGG 2 cut(s) 439, 771
BmsI GCATC 4 cut(s) 95, 211, 632, 836
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 439
BsaAI YACGTR 1 cut(s) 692
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 392, 438, 635
BsaXI ACNNNNNCTCC 4 cut(s) 388, 418, 648, 678
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 541, 636
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 3 cut(s) 392, 438, 635
BseGI GGATG 4 cut(s) 86, 626, 647, 851
BseLI CCNNNNNNNGG 3 cut(s) 437, 541, 636
BseMII CTCAG 3 cut(s) 27, 662, 866
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 2 cut(s) 222, 557
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 2 cut(s) 236, 282
BseYI CCCAGC 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 828
BshFI GGCC 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 828
BsiSI CCGG 1 cut(s) 438
BslI CCNNNNNNNGG 3 cut(s) 437, 541, 636
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 1 cut(s) 246
Bso31I GGTCTC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 3 cut(s) 78, 386, 829
BspACI CCGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 3 cut(s) 26, 661, 867
BspLI GGNNCC 2 cut(s) 10, 37
BspTNI GGTCTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 392, 438, 635
BssMI GATC 3 cut(s) 78, 386, 829
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 392, 635
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 2 cut(s) 59, 199
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 585, 681
BstDEI CTNAG 4 cut(s) 13, 602, 648, 875
BstF5I GGATG 4 cut(s) 86, 626, 647, 851
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 2 cut(s) 647, 791
BstKTI GATC 3 cut(s) 81, 389, 832
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 3 cut(s) 78, 386, 829
BstMCI CGRYCG 1 cut(s) 828
BstMWI GCNNNNNNNGC 3 cut(s) 680, 756, 797
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 2 cut(s) 437, 769
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 2 cut(s) 236, 282
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 4 cut(s) 86, 626, 647, 851
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 585, 681
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 2 cut(s) 647, 791
Cfr13I GGNCC 2 cut(s) 36, 623
CseI GACGC 1 cut(s) 174
CviAII CATG 4 cut(s) 130, 458, 467, 680
CviJI RGCY 9 cut(s) 74, 227, 246, 360, 570, 587, 674, 874, 888
CviKI_1 RGCY 9 cut(s) 74, 227, 246, 360, 570, 587, 674, 874, 888
DdeI CTNAG 4 cut(s) 13, 602, 648, 875
DpnI GATC 3 cut(s) 80, 388, 831
DpnII GATC 3 cut(s) 78, 386, 829
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 392, 635
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 36, 623
Eco57I CTGAAG 2 cut(s) 90, 363
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 2 cut(s) 392, 635
ErhI CCWWGG 2 cut(s) 392, 635
FaeI CATG 4 cut(s) 133, 461, 470, 683
FalI AAGNNNNNCTT 4 cut(s) 376, 408, 778, 810
FatI CATG 4 cut(s) 129, 457, 466, 679
Fnu4HI GCNGC 2 cut(s) 225, 271
FokI GGATG 4 cut(s) 73, 613, 654, 858
Fsp4HI GCNGC 2 cut(s) 225, 271
FspBI CTAG 2 cut(s) 30, 576
GlaI GCGC 2 cut(s) 646, 790
GluI GCNGC 2 cut(s) 225, 271
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 792
HaeIII GGCC 1 cut(s) 246
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 174
HhaI GCGC 2 cut(s) 647, 791
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 4 cut(s) 133, 461, 470, 683
Hin6I GCGC 2 cut(s) 645, 789
HinP1I GCGC 2 cut(s) 645, 789
HinfI GANTC 3 cut(s) 65, 296, 718
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 8 cut(s) 16, 55, 70, 190, 295, 343, 416, 559
Hpy188III TCNNGA 4 cut(s) 23, 212, 576, 630
Hpy8I GTNNAC 1 cut(s) 39
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 3 cut(s) 171, 338, 662
HpyCH4III ACNGT 2 cut(s) 59, 199
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 3 cut(s) 224, 470, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 680, 756, 797
HpyF3I CTNAG 4 cut(s) 13, 602, 648, 875
HpySE526I ACGT 1 cut(s) 691
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 4 cut(s) 133, 461, 470, 683
HspAI GCGC 2 cut(s) 645, 789
Kzo9I GATC 3 cut(s) 78, 386, 829
LmnI GCTCC 4 cut(s) 255, 481, 688, 836
Lsp1109I GCAGC 2 cut(s) 236, 282
LweI GCATC 4 cut(s) 95, 211, 632, 836
MaeI CTAG 2 cut(s) 30, 576
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 80, 388, 831
MboI GATC 3 cut(s) 78, 386, 829
MboII GAAGA 3 cut(s) 87, 164, 795
MfeI CAATTG 1 cut(s) 840
MhlI GDGCHC 1 cut(s) 535
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 8 cut(s) 18, 312, 589, 609, 751, 764, 776, 840
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 2 cut(s) 305, 727
MnlI CCTC 8 cut(s) 22, 52, 175, 243, 298, 525, 535, 538
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 882
MslI CAYNNNNRTG 1 cut(s) 813
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 439, 771
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 1 cut(s) 771
MwoI GCNNNNNNNGC 3 cut(s) 680, 756, 797
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 78, 386, 829
NlaIII CATG 4 cut(s) 133, 461, 470, 683
NlaIV GGNNCC 2 cut(s) 10, 37
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 1 cut(s) 683
PaeI GCATGC 1 cut(s) 683
PfeI GAWTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 636
PkrI GCNGC 2 cut(s) 226, 272
PleI GAGTC 2 cut(s) 304, 726
PpsI GAGTC 2 cut(s) 304, 726
Ppu21I YACGTR 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 769
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 2 cut(s) 10, 37
PspPI GGNCC 2 cut(s) 36, 623
PstNI CAGNNNCTG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 813
SaqAI TTAA 1 cut(s) 882
SatI GCNGC 2 cut(s) 225, 271
Sau3AI GATC 3 cut(s) 78, 386, 829
Sau96I GGNCC 2 cut(s) 36, 623
SchI GAGTC 2 cut(s) 305, 727
ScrFI CCNGG 2 cut(s) 439, 771
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 4 cut(s) 95, 211, 632, 836
SinI GGWCC 2 cut(s) 36, 623
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SphI GCATGC 1 cut(s) 683
Sse9I AATT 8 cut(s) 18, 312, 589, 609, 751, 764, 776, 840
SsiI CCGC 1 cut(s) 250
SspMI CTAG 2 cut(s) 30, 576
StyD4I CCNGG 2 cut(s) 437, 769
StyI CCWWGG 2 cut(s) 392, 635
TaaI ACNGT 2 cut(s) 59, 199
TaiI ACGT 1 cut(s) 694
TaqI TCGA 2 cut(s) 666, 828
TaqII GACCGA 1 cut(s) 814
TasI AATT 8 cut(s) 18, 312, 589, 609, 751, 764, 776, 840
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 882
Tru9I TTAA 1 cut(s) 882
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 224, 270
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 636
VpaK11BI GGWCC 2 cut(s) 36, 623
XapI RAATTY 3 cut(s) 18, 312, 764
XbaI TCTAGA 1 cut(s) 575
XceI RCATGY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 633
XspI CTAG 2 cut(s) 30, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.