Rroxscaffold_5G00380440

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011785
Physical Location & Seq
Forward (+)
60597065 .. 60600639
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380440.1

Sequence Viewer

Length: 891 bp
ATGGAGGGAACCTCAGAAATTCAAGATACTGGGGGGTCCACGTCATCTCGTTCAGACAGTAGTGAATCTGAACCCACGGTCAAGGCATCCCTATCCTGTCATCATACTTTCGCAAGTCGCCGTTCTTTCATGTCCAAACCTATATATCCCTTGTCATTTCCTCCACAAACTCCCCCCAGAGAGGCTTCTGACTTAACAGTTGCTGGGTTTCCAGAATTTGATGCTGCCACTCCTCAGAGAGATGGCCACCGCTGGAGCAGTGCCAGCAGCAGTGTTGATTTTACTGATGTTTCTGAGTCATTTGAGGCAGAAATTTCTGGTCGACACTTCAGTAATATGTCTGAGGGGTTTAGATGTGGCTTGTGTGATAGGTTCCTTTCACAGAGATCACCTTGGAGTTCTCGTCGCATAGTCAGAAGTGGAGATATGCCAATCACCGGGGTTCTTTCTTGTTGTCATGTTTTCCATGCAGAGTGCTTGGAGCAAACAACACCGAAGATCCGCAAAAGTGACCCTCCCTGCCCCCTATGTGCCCGACTTGAGGAGGAAAATCTCTCTGAACAGCAAAGCTTTTCTAGATTGCGAGCTAGTTTTCCAAGACTTAGACCAATTAGTGATGATGGACCATCCAGGCCTTGGGGATGCGCTCAGGTGGGAGATTGTGTTGAAGGGGCTTTGCAGGCTCCCCCACGCAATAGTATGCTGTTGCTCAATAGGAGTCGCATAAAGAAAAATCTTTCTTTGAAAAGCAATTCGAGCAAAGAATTTCCTGGTAAATTGAGAAAAAGCGGCACTTACTATTCACAACATCTGAGTGGAAAATCAGTTGATCAGGGAGCAGTTGGATGCTCAAAGTCAAAGATGACAGCAGGGCCGAGTATTAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

32.41

Weight (kDa)

8.77

Isoelectric Point (pI)

68.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14180 AT1G14180
fragaria_vesca FvH4_4g31130 FvH4_4g31130
malus_domestica MD13G1070100.v1.1 MD16G1070500.v1.1
prunus_persica Prupe.1G276800_v2.0.a1
pyrus_communis pycom13g06280 pycom16g06130
rosa_chinensis RchiOBHm_Chr4g0439521
rosa_laevigata RLG00000006261
rosa_multiflora Rmu_sc0007276.1_g000009
rosa_roxburghii Rroxscaffold_5G00380440
rosa_rugosa Rorug04G0319300
rosa_samantha Rh4AG370400 Rh4BG382300 Rh4CG396900 Rh4DG377000
rosa_wichuraiana Rw4G031580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 636
AccI GTMKAC 1 cut(s) 322
AciI CCGC 3 cut(s) 250, 502, 789
AclWI GGATC 1 cut(s) 493
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 4 cut(s) 18, 215, 312, 764
AcuI CTGAAG 1 cut(s) 313
AfiI CCNNNNNNNGG 4 cut(s) 181, 437, 541, 636
AgsI TTSAA 3 cut(s) 23, 668, 745
AjiI CACGTC 1 cut(s) 42
AjnI CCWGG 2 cut(s) 629, 769
AluBI AGCT 3 cut(s) 570, 587, 888
AluI AGCT 3 cut(s) 570, 587, 888
AlwI GGATC 1 cut(s) 493
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 3 cut(s) 244, 632, 872
ApeKI GCWGC 2 cut(s) 224, 267
ApoI RAATTY 4 cut(s) 18, 215, 312, 764
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 3 cut(s) 36, 623, 872
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 381, 427
AvaII GGWCC 2 cut(s) 36, 623
BaeGI GKGCMC 1 cut(s) 535
BalI TGGCCA 1 cut(s) 246
BbvI GCAGC 2 cut(s) 211, 279
BccI CCATC 3 cut(s) 236, 614, 634
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 2 cut(s) 631, 771
BclI TGATCA 1 cut(s) 829
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 2 cut(s) 576, 588
BisI GCNGC 3 cut(s) 225, 268, 790
BlsI GCNGC 3 cut(s) 226, 269, 791
Bme1390I CCNGG 3 cut(s) 439, 631, 771
Bme18I GGWCC 2 cut(s) 36, 623
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 3 cut(s) 36, 623, 872
BmiI GGNNCC 4 cut(s) 10, 37, 374, 684
BmrFI CCNGG 3 cut(s) 439, 631, 771
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 4 cut(s) 95, 211, 632, 836
BmuI ACTGGG 1 cut(s) 39
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 4 cut(s) 75, 392, 438, 635
BsaXI ACNNNNNCTCC 4 cut(s) 388, 418, 648, 678
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 437, 541, 636
Bse1I ACTGG 1 cut(s) 34
BseBI CCWGG 2 cut(s) 631, 771
BseDI CCNNGG 4 cut(s) 75, 392, 438, 635
BseGI GGATG 4 cut(s) 86, 626, 647, 851
BseLI CCNNNNNNNGG 4 cut(s) 181, 437, 541, 636
BseMII CTCAG 6 cut(s) 27, 248, 285, 333, 662, 803
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 222, 557
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 2 cut(s) 211, 279
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 3 cut(s) 246, 634, 874
BsiSI CCGG 1 cut(s) 438
BslI CCNNNNNNNGG 4 cut(s) 181, 437, 541, 636
BsnI GGCC 3 cut(s) 246, 634, 874
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 3 cut(s) 386, 498, 829
BspACI CCGC 3 cut(s) 250, 502, 789
BspANI GGCC 3 cut(s) 246, 634, 874
BspCNI CTCAG 6 cut(s) 26, 247, 286, 334, 661, 804
BspLI GGNNCC 4 cut(s) 10, 37, 374, 684
BspPI GGATC 1 cut(s) 493
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 4 cut(s) 75, 392, 438, 635
BssMI GATC 3 cut(s) 386, 498, 829
BssT1I CCWWGG 2 cut(s) 392, 635
Bst2UI CCWGG 2 cut(s) 631, 771
Bst4CI ACNGT 3 cut(s) 59, 79, 199
BstC8I GCNNGC 3 cut(s) 265, 585, 681
BstDEI CTNAG 7 cut(s) 13, 234, 294, 342, 602, 648, 812
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 86, 626, 647, 851
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 3 cut(s) 389, 501, 832
BstMBI GATC 3 cut(s) 386, 498, 829
BstMWI GCNNNNNNNGC 3 cut(s) 264, 680, 756
BstNI CCWGG 2 cut(s) 631, 771
BstSCI CCNGG 3 cut(s) 437, 629, 769
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 2 cut(s) 211, 279
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BsuRI GGCC 3 cut(s) 246, 634, 874
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 4 cut(s) 86, 626, 647, 851
BtsI GCAGTG 2 cut(s) 265, 277
BtsIMutI CAGTG 2 cut(s) 265, 277
Cac8I GCNNGC 3 cut(s) 265, 585, 681
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 647
Cfr13I GGNCC 3 cut(s) 36, 623, 872
CviAII CATG 3 cut(s) 130, 458, 467
DdeI CTNAG 7 cut(s) 13, 234, 294, 342, 602, 648, 812
DpnI GATC 3 cut(s) 388, 500, 831
DpnII GATC 3 cut(s) 386, 498, 829
EaeI YGGCCR 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 392, 635
Eco147I AGGCCT 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 36, 623
Eco57I CTGAAG 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 629, 769
EcoT14I CCWWGG 2 cut(s) 392, 635
ErhI CCWWGG 2 cut(s) 392, 635
FaeI CATG 3 cut(s) 133, 461, 470
FalI AAGNNNNNCTT 2 cut(s) 778, 810
FatI CATG 3 cut(s) 129, 457, 466
FbaI TGATCA 1 cut(s) 829
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 225, 268, 790
FokI GGATG 4 cut(s) 73, 613, 654, 858
Fsp4HI GCNGC 3 cut(s) 225, 268, 790
FspBI CTAG 2 cut(s) 576, 588
GlaI GCGC 1 cut(s) 646
GluI GCNGC 3 cut(s) 225, 268, 790
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 3 cut(s) 246, 634, 874
HapII CCGG 1 cut(s) 438
HhaI GCGC 1 cut(s) 647
Hin1II CATG 3 cut(s) 133, 461, 470
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 3 cut(s) 65, 296, 718
HpaII CCGG 1 cut(s) 438
HphI GGTGA 2 cut(s) 381, 427
Hpy166II GTNNAC 2 cut(s) 39, 323
Hpy188III TCNNGA 3 cut(s) 23, 212, 576
Hpy8I GTNNAC 2 cut(s) 39, 323
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 3 cut(s) 59, 79, 199
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 470, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 264, 680, 756
HpyF3I CTNAG 7 cut(s) 13, 234, 294, 342, 602, 648, 812
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 3 cut(s) 133, 461, 470
HspAI GCGC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 3 cut(s) 386, 498, 829
LmnI GCTCC 4 cut(s) 255, 481, 688, 836
Lsp1109I GCAGC 2 cut(s) 211, 279
LweI GCATC 4 cut(s) 95, 211, 632, 836
MaeI CTAG 2 cut(s) 576, 588
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 388, 500, 831
MboI GATC 3 cut(s) 386, 498, 829
MboII GAAGA 1 cut(s) 508
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 535
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 7 cut(s) 18, 215, 312, 609, 751, 764, 776
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 2 cut(s) 305, 727
MmeI TCCRAC 1 cut(s) 823
MnlI CCTC 9 cut(s) 22, 171, 175, 243, 298, 337, 525, 535, 538
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 2 cut(s) 194, 882
MslI CAYNNNNRTG 1 cut(s) 813
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 3 cut(s) 439, 631, 771
MvaI CCWGG 2 cut(s) 631, 771
MwoI GCNNNNNNNGC 3 cut(s) 264, 680, 756
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 386, 498, 829
NlaIII CATG 3 cut(s) 133, 461, 470
NlaIV GGNNCC 4 cut(s) 10, 37, 374, 684
NmuCI GTSAC 1 cut(s) 509
PceI AGGCCT 1 cut(s) 634
PfeI GAWTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 636
PkrI GCNGC 3 cut(s) 226, 269, 791
PleI GAGTC 2 cut(s) 304, 726
PpsI GAGTC 2 cut(s) 304, 726
Psp6I CCWGG 2 cut(s) 629, 769
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 2 cut(s) 629, 769
PspN4I GGNNCC 4 cut(s) 10, 37, 374, 684
PspPI GGNCC 3 cut(s) 36, 623, 872
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 813
SalI GTCGAC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 194, 882
SatI GCNGC 3 cut(s) 225, 268, 790
Sau3AI GATC 3 cut(s) 386, 498, 829
Sau96I GGNCC 3 cut(s) 36, 623, 872
SchI GAGTC 2 cut(s) 305, 727
ScrFI CCNGG 3 cut(s) 439, 631, 771
SduI GDGCHC 1 cut(s) 535
SetI ASST 9 cut(s) 14, 44, 142, 374, 394, 572, 589, 654, 890
SfaNI GCATC 4 cut(s) 95, 211, 632, 836
SinI GGWCC 2 cut(s) 36, 623
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 7 cut(s) 18, 215, 312, 609, 751, 764, 776
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 3 cut(s) 250, 502, 789
SspMI CTAG 2 cut(s) 576, 588
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 3 cut(s) 437, 629, 769
StyI CCWWGG 2 cut(s) 392, 635
TaaI ACNGT 3 cut(s) 59, 79, 199
TaiI ACGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 322, 755
TasI AATT 7 cut(s) 18, 215, 312, 609, 751, 764, 776
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 194, 882
Tru9I TTAA 2 cut(s) 194, 882
TscAI CASTG 2 cut(s) 265, 277
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 224, 267
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 2 cut(s) 265, 277
Van91I CCANNNNNTGG 1 cut(s) 636
VpaK11BI GGWCC 2 cut(s) 36, 623
XapI RAATTY 4 cut(s) 18, 215, 312, 764
XbaI TCTAGA 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 633
XmiI GTMKAC 1 cut(s) 322
XspI CTAG 2 cut(s) 576, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.