AT1G14420

Pectate lyase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
4931485 .. 4933662
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14420.1

Sequence Viewer

Length: 1380 bp
ATGGCAGCAGCTTTCTTGAATCTTGGCGGCTATGTTTTCGTTTTCTTCTCTTCGTTCTTAGCTATAGTGGCCCCACAGGTTCGAGGCAATGTTGCTGTCTTTGATAGCTACTGGACGCAACGACAAAGTGATGCATTGAAACAAACCATCGGCTCTTACGATCCTCATCCACTTAACGTCACCAACCATTTTAATTACCATGTCAATATAGCAGTGGATGCATCGGAATCAAGGAACGATACAAGGAGAGAGCTTACTCAGGTGAGAAGTGGTCGTAAAACGCACAAAAGCAGCGGAAAATGCCTAGCTTATAACCCGATAGACAACTGCTGGCGATGCGATCGTAACTGGGCTAATAACCGGAAGAAACTAGCCGACTGTGTGCTCGGATTCGGCCGGAGAACCACCGGAGGAAAAGACGGACCGATATACGTCGTCAAAGACGCGTCTGACAACGATCTTATCAACCCTAAACCAGGAACGTTAAGGCATGCAGTGACTCGAGACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAAAACTGCAACAAGAACTGATGATAACGAGCGACAAAACAATCGATGGAAGAGGAGCTAGGGTTTACATCATGGAAGGTGCTGGATTAACGTTGCAATTTGTGAATAATGTGATCATTCACAATATTTATGTCAAGCACATTGTTCCTGGGAACGGTGGGTTGATCAGAGACTCTGAGGCTCACATAGGGCTTAGGACAAAAAGTGATGGTGATGGAATCAGTTTGTTTGGAGCAACCAATATTTGGATCGACCATGTCTCAATGACAAGATGTGCAGATGGTATGATCGATGCTATTGACGGCTCCACTGCTGTAACTATTTCCAACAGTCATTTCACCGACCACCAAGAGGTGATGTTGTTTGGGGCGAGGGACGAACACGTGATCGACAAGAAAATGCAGATAACGGTTGCGTTTAACCACTTCGGTAAGCGATTGGAACAGAGAATGCCTCGTTGCAGATACGGAACGATACATGTGGTGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGGAACATGAACCCTACAATTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAATGAAGAAGCCAAACAGATTACAAAAAGAGAGTACACACCATACGGTGAATGGAAATCTTGGAATTGGCAATCAGAAGGAGATTACTTTCTCAACGGAGCTTATTTTGTGCAATCCGGAAAAGCAAATGCGTGGAGCTCTAAACCGAAAACCCCGCTCCCAAACAAGTTTACAATTCGACCTAAACCGGGAACGATGGTCCGGAAACTTACCATGGATGCAGGAGTACTTGGCTGCAAACTTGGTGAAGCTTGCTGA

Protein Analysis

459

Amino Acids

51.45

Weight (kDa)

9.23

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pec_lyase_N PF04431 30 - 85 2.2e-20 Pectate lyase, N terminus
Pectate_lyase_4 PF00544 185 - 384 3.8e-22 Pectate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AccB7I CCANNNNNTGG 1 cut(s) 789
AccBSI CCGCTC 1 cut(s) 1279
AccII CGCG 1 cut(s) 446
AccIII TCCGGA 2 cut(s) 1238, 1323
AciI CCGC 4 cut(s) 27, 294, 512, 1277
AclI AACGTT 2 cut(s) 482, 635
AclWI GGATC 3 cut(s) 155, 527, 800
AcoI YGGCCR 1 cut(s) 394
AcvI CACGTG 1 cut(s) 928
AfaI GTAC 2 cut(s) 1157, 1350
AfiI CCNNNNNNNGG 5 cut(s) 476, 698, 789, 895, 1310
AflIII ACRYGT 3 cut(s) 444, 925, 1021
AgsI TTSAA 2 cut(s) 19, 139
AjnI CCWGG 2 cut(s) 475, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AluBI AGCT 9 cut(s) 11, 62, 108, 253, 308, 602, 1223, 1260, 1373
AluI AGCT 9 cut(s) 11, 62, 108, 253, 308, 602, 1223, 1260, 1373
Alw21I GWGCWC 2 cut(s) 387, 1262
Alw26I GTCTC 3 cut(s) 498, 708, 808
AlwI GGATC 3 cut(s) 155, 527, 800
Ama87I CYCGRG 1 cut(s) 501
Aor13HI TCCGGA 2 cut(s) 1238, 1323
AoxI GGCC 2 cut(s) 69, 394
ApeKI GCWGC 4 cut(s) 5, 8, 291, 1356
AspS9I GGNCC 4 cut(s) 70, 422, 509, 1321
AsuC2I CCSGG 1 cut(s) 1311
AsuHPI GGTGA 8 cut(s) 172, 274, 767, 874, 910, 1039, 1181, 1379
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 3 cut(s) 422, 509, 1321
BanII GRGCYC 1 cut(s) 1262
BbrPI CACGTG 1 cut(s) 928
Bbv12I GWGCWC 2 cut(s) 387, 1262
BbvI GCAGC 4 cut(s) 17, 20, 303, 1343
BccI CCATC 6 cut(s) 155, 584, 746, 752, 818, 1312
BceAI ACGGC 1 cut(s) 862
BciT130I CCWGG 2 cut(s) 477, 693
BclI TGATCA 3 cut(s) 540, 657, 708
BcnI CCSGG 1 cut(s) 1311
BcoDI GTCTC 3 cut(s) 498, 708, 808
BfaI CTAG 3 cut(s) 305, 371, 603
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 5 cut(s) 6, 9, 28, 292, 1357
BlsI GCNGC 5 cut(s) 7, 10, 29, 293, 1358
BmcAI AGTACT 1 cut(s) 1350
Bme1390I CCNGG 3 cut(s) 477, 693, 1311
Bme18I GGWCC 3 cut(s) 422, 509, 1321
BmeT110I CYCGRG 1 cut(s) 501
BmgT120I GGNCC 4 cut(s) 70, 422, 509, 1321
BmiI GGNNCC 2 cut(s) 72, 850
BmrFI CCNGG 3 cut(s) 477, 693, 1311
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 6 cut(s) 121, 208, 230, 326, 826, 1330
BmuI ACTGGG 1 cut(s) 358
BplI GAGNNNNNCTC 2 cut(s) 982, 1014
Bpu10I CCTNAGC 1 cut(s) 737
BpuMI CCSGG 1 cut(s) 1311
Bsa29I ATCGAT 2 cut(s) 588, 834
BsaAI YACGTR 1 cut(s) 928
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 692, 1335
BsaWI WCCGGW 4 cut(s) 360, 407, 1238, 1323
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 5 cut(s) 476, 698, 789, 895, 1310
Bse1I ACTGG 2 cut(s) 116, 353
Bse3DI GCAATG 2 cut(s) 94, 1110
Bse8I GATNNNNATC 1 cut(s) 165
BseAI TCCGGA 2 cut(s) 1238, 1323
BseBI CCWGG 2 cut(s) 477, 693
BseCI ATCGAT 2 cut(s) 588, 834
BseDI CCNNGG 2 cut(s) 692, 1335
BseGI GGATG 3 cut(s) 166, 223, 1345
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 5 cut(s) 476, 698, 789, 895, 1310
BseMI GCAATG 2 cut(s) 94, 1110
BseMII CTCAG 2 cut(s) 272, 711
BseNI ACTGG 2 cut(s) 116, 353
BseRI GAGGAG 2 cut(s) 612, 1107
BseX3I CGGCCG 1 cut(s) 394
BseXI GCAGC 4 cut(s) 17, 20, 303, 1343
BsgI GTGCAG 1 cut(s) 840
Bsh1236I CGCG 1 cut(s) 446
Bsh1285I CGRYCG 2 cut(s) 343, 397
BshFI GGCC 2 cut(s) 71, 396
BshVI ATCGAT 2 cut(s) 588, 834
BsiEI CGRYCG 2 cut(s) 343, 397
BsiHKAI GWGCWC 2 cut(s) 387, 1262
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 6 cut(s) 361, 397, 408, 1239, 1310, 1324
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 5 cut(s) 476, 698, 789, 895, 1310
BsmAI GTCTC 3 cut(s) 498, 708, 808
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 932
BsmI GAATGC 1 cut(s) 999
BsnI GGCC 2 cut(s) 71, 396
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 387, 1262
Bsp13I TCCGGA 2 cut(s) 1238, 1323
Bsp19I CCATGG 1 cut(s) 1335
BspACI CCGC 4 cut(s) 27, 294, 512, 1277
BspANI GGCC 2 cut(s) 71, 396
BspCNI CTCAG 2 cut(s) 271, 712
BspDI ATCGAT 2 cut(s) 588, 834
BspEI TCCGGA 2 cut(s) 1238, 1323
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 2 cut(s) 72, 850
BspPI GGATC 3 cut(s) 155, 527, 800
BsrBI CCGCTC 1 cut(s) 1279
BsrDI GCAATG 2 cut(s) 94, 1110
BsrI ACTGG 2 cut(s) 116, 353
BssECI CCNNGG 2 cut(s) 692, 1335
BssT1I CCWWGG 1 cut(s) 1335
Bst2UI CCWGG 2 cut(s) 477, 693
Bst4CI ACNGT 5 cut(s) 380, 701, 875, 955, 1169
Bst6I CTCTTC 2 cut(s) 55, 589
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 928
BstC8I GCNNGC 3 cut(s) 332, 492, 1375
BstDEI CTNAG 4 cut(s) 58, 258, 720, 737
BstDSI CCRYGG 1 cut(s) 1335
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 166, 223, 1345
BstFNI CGCG 1 cut(s) 446
BstMAI GTCTC 3 cut(s) 498, 708, 808
BstMCI CGRYCG 2 cut(s) 343, 397
BstMWI GCNNNNNNNGC 4 cut(s) 68, 218, 300, 336
BstNI CCWGG 2 cut(s) 477, 693
BstNSI RCATGY 2 cut(s) 494, 1025
BstSCI CCNGG 3 cut(s) 475, 691, 1309
BstSFI CTRYAG 1 cut(s) 63
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 4 cut(s) 17, 20, 303, 1343
BstZI CGGCCG 1 cut(s) 394
Bsu15I ATCGAT 2 cut(s) 588, 834
BsuRI GGCC 2 cut(s) 71, 396
BsuTUI ATCGAT 2 cut(s) 588, 834
BtgI CCRYGG 1 cut(s) 1335
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 3 cut(s) 166, 223, 1345
BtsI GCAGTG 3 cut(s) 219, 501, 852
BtsIMutI CAGTG 3 cut(s) 219, 501, 852
Cac8I GCNNGC 3 cut(s) 332, 492, 1375
Cfr13I GGNCC 4 cut(s) 70, 422, 509, 1321
ClaI ATCGAT 2 cut(s) 588, 834
CpoI CGGWCCG 2 cut(s) 422, 509
CseI GACGC 3 cut(s) 124, 435, 452
Csp6I GTAC 2 cut(s) 1156, 1349
CspI CGGWCCG 2 cut(s) 422, 509
CviAII CATG 8 cut(s) 200, 491, 538, 616, 800, 1022, 1075, 1336
CviQI GTAC 2 cut(s) 1156, 1349
DdeI CTNAG 4 cut(s) 58, 258, 720, 737
EaeI YGGCCR 1 cut(s) 394
EagI CGGCCG 1 cut(s) 394
Eam1104I CTCTTC 2 cut(s) 55, 589
EarI CTCTTC 2 cut(s) 55, 589
Ecl136II GAGCTC 1 cut(s) 1260
EclXI CGGCCG 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 1335
Eco24I GRGCYC 1 cut(s) 1262
Eco47I GGWCC 3 cut(s) 422, 509, 1321
Eco52I CGGCCG 1 cut(s) 394
Eco53kI GAGCTC 1 cut(s) 1260
Eco72I CACGTG 1 cut(s) 928
Eco88I CYCGRG 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 1260
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 475, 691
EcoT14I CCWWGG 1 cut(s) 1335
EcoT22I ATGCAT 2 cut(s) 136, 223
EcoT38I GRGCYC 1 cut(s) 1262
ErhI CCWWGG 1 cut(s) 1335
Esp3I CGTCTC 1 cut(s) 498
FaeI CATG 8 cut(s) 203, 494, 541, 619, 803, 1025, 1078, 1339
FaqI GGGAC 1 cut(s) 932
FatI CATG 8 cut(s) 199, 490, 537, 615, 799, 1021, 1074, 1335
FauI CCCGC 1 cut(s) 1284
FbaI TGATCA 3 cut(s) 540, 657, 708
Fnu4HI GCNGC 5 cut(s) 6, 9, 28, 292, 1357
FokI GGATG 3 cut(s) 153, 230, 1352
FriOI GRGCYC 1 cut(s) 1262
Fsp4HI GCNGC 5 cut(s) 6, 9, 28, 292, 1357
FspBI CTAG 3 cut(s) 305, 371, 603
GluI GCNGC 5 cut(s) 6, 9, 28, 292, 1357
HaeIII GGCC 2 cut(s) 71, 396
HapII CCGG 6 cut(s) 361, 397, 408, 1239, 1310, 1324
HgaI GACGC 3 cut(s) 124, 435, 452
Hin1II CATG 8 cut(s) 203, 494, 541, 619, 803, 1025, 1078, 1339
HindIII AAGCTT 1 cut(s) 1371
HinfI GANTC 6 cut(s) 19, 227, 390, 499, 716, 762
HpaII CCGG 6 cut(s) 361, 397, 408, 1239, 1310, 1324
HphI GGTGA 8 cut(s) 172, 274, 767, 874, 910, 1039, 1181, 1379
Hpy166II GTNNAC 4 cut(s) 610, 1030, 1158, 1293
Hpy188I TCNGA 6 cut(s) 226, 389, 451, 713, 721, 1198
Hpy188III TCNNGA 4 cut(s) 16, 503, 1239, 1324
Hpy8I GTNNAC 4 cut(s) 610, 1030, 1158, 1293
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 2 cut(s) 614, 1193
HpyCH4III ACNGT 5 cut(s) 380, 701, 875, 955, 1169
HpyCH4IV ACGT 5 cut(s) 177, 432, 482, 635, 927
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 218, 300, 336
HpyF3I CTNAG 4 cut(s) 58, 258, 720, 737
HpySE526I ACGT 5 cut(s) 177, 432, 482, 635, 927
Hsp92II CATG 8 cut(s) 203, 494, 541, 619, 803, 1025, 1078, 1339
Kpn2I TCCGGA 2 cut(s) 1238, 1323
Ksp22I TGATCA 3 cut(s) 540, 657, 708
LmnI GCTCC 7 cut(s) 599, 776, 854, 1120, 1220, 1257, 1284
Lsp1109I GCAGC 4 cut(s) 17, 20, 303, 1343
LweI GCATC 6 cut(s) 121, 208, 230, 326, 826, 1330
MaeI CTAG 3 cut(s) 305, 371, 603
MaeII ACGT 5 cut(s) 177, 432, 482, 635, 927
MaeIII GTNAC 4 cut(s) 178, 344, 496, 859
MbiI CCGCTC 1 cut(s) 1279
MboII GAAGA 5 cut(s) 37, 42, 376, 606, 1139
MfeI CAATTG 1 cut(s) 1062
MhlI GDGCHC 2 cut(s) 387, 1262
MluCI AATT 6 cut(s) 193, 641, 1062, 1086, 1186, 1296
MluI ACGCGT 1 cut(s) 444
MlyI GAGTC 2 cut(s) 493, 710
MmeI TCCRAC 1 cut(s) 894
MnlI CCTC 9 cut(s) 77, 174, 404, 590, 715, 889, 909, 1008, 1128
Mph1103I ATGCAT 2 cut(s) 136, 223
MroI TCCGGA 2 cut(s) 1238, 1323
MseI TTAA 5 cut(s) 174, 192, 485, 632, 963
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 6 cut(s) 361, 397, 408, 1239, 1310, 1324
MspR9I CCNGG 3 cut(s) 477, 693, 1311
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 999
MvaI CCWGG 2 cut(s) 477, 693
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 4 cut(s) 68, 218, 300, 336
NciI CCSGG 1 cut(s) 1311
NcoI CCATGG 1 cut(s) 1335
NlaIII CATG 8 cut(s) 203, 494, 541, 619, 803, 1025, 1078, 1339
NlaIV GGNNCC 2 cut(s) 72, 850
NmuCI GTSAC 2 cut(s) 178, 496
NsiI ATGCAT 2 cut(s) 136, 223
NspI RCATGY 2 cut(s) 494, 1025
PaeI GCATGC 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 501
PciI ACATGT 1 cut(s) 1021
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 999
PfeI GAWTC 4 cut(s) 19, 227, 390, 762
PflFI GACNNNGTC 1 cut(s) 800
PflMI CCANNNNNTGG 1 cut(s) 789
PkrI GCNGC 5 cut(s) 7, 10, 29, 293, 1358
Ple19I CGATCG 1 cut(s) 343
PleI GAGTC 2 cut(s) 493, 710
PmaCI CACGTG 1 cut(s) 928
PmlI CACGTG 1 cut(s) 928
PpsI GAGTC 2 cut(s) 493, 710
Ppu21I YACGTR 1 cut(s) 928
PscI ACATGT 1 cut(s) 1021
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 1262
Psp1406I AACGTT 2 cut(s) 482, 635
Psp6I CCWGG 2 cut(s) 475, 691
PspCI CACGTG 1 cut(s) 928
PspGI CCWGG 2 cut(s) 475, 691
PspN4I GGNNCC 2 cut(s) 72, 850
PspPI GGNCC 4 cut(s) 70, 422, 509, 1321
PsrI GAACNNNNNNTAC 2 cut(s) 1022, 1054
PsyI GACNNNGTC 1 cut(s) 800
PvuI CGATCG 1 cut(s) 343
RsaI GTAC 2 cut(s) 1157, 1350
RsaNI GTAC 2 cut(s) 1156, 1349
Rsr2I CGGWCCG 2 cut(s) 422, 509
RsrII CGGWCCG 2 cut(s) 422, 509
SacI GAGCTC 1 cut(s) 1262
SaqAI TTAA 5 cut(s) 174, 192, 485, 632, 963
SatI GCNGC 5 cut(s) 6, 9, 28, 292, 1357
Sau96I GGNCC 4 cut(s) 70, 422, 509, 1321
ScaI AGTACT 1 cut(s) 1350
SchI GAGTC 2 cut(s) 493, 710
ScrFI CCNGG 3 cut(s) 477, 693, 1311
SduI GDGCHC 2 cut(s) 387, 1262
SfaNI GCATC 6 cut(s) 121, 208, 230, 326, 826, 1330
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 501
SinI GGWCC 3 cut(s) 422, 509, 1321
SlaI CTCGAG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
SphI GCATGC 1 cut(s) 494
Sse9I AATT 6 cut(s) 193, 641, 1062, 1086, 1186, 1296
SsiI CCGC 4 cut(s) 27, 294, 512, 1277
SspI AATATT 2 cut(s) 670, 787
SspMI CTAG 3 cut(s) 305, 371, 603
SstI GAGCTC 1 cut(s) 1262
StyD4I CCNGG 3 cut(s) 475, 691, 1309
StyI CCWWGG 1 cut(s) 1335
TaaI ACNGT 5 cut(s) 380, 701, 875, 955, 1169
TaiI ACGT 5 cut(s) 180, 435, 485, 638, 930
TaqI TCGA 7 cut(s) 82, 502, 588, 795, 834, 933, 1300
TaqII GACCGA 1 cut(s) 439
TasI AATT 6 cut(s) 193, 641, 1062, 1086, 1186, 1296
TatI WGTACW 2 cut(s) 1155, 1348
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 4 cut(s) 19, 227, 390, 762
Tru1I TTAA 5 cut(s) 174, 192, 485, 632, 963
Tru9I TTAA 5 cut(s) 174, 192, 485, 632, 963
TscAI CASTG 3 cut(s) 219, 501, 859
TseFI GTSAC 2 cut(s) 178, 496
TseI GCWGC 4 cut(s) 5, 8, 291, 1356
Tsp45I GTSAC 2 cut(s) 178, 496
TspDTI ATGAA 3 cut(s) 1091, 1099, 1140
TspGWI ACGGA 4 cut(s) 435, 522, 1026, 1233
TspRI CASTG 3 cut(s) 219, 501, 859
Tth111I GACNNNGTC 1 cut(s) 800
Van91I CCANNNNNTGG 1 cut(s) 789
VpaK11BI GGWCC 3 cut(s) 422, 509, 1321
XagI CCTNNNNNAGG 1 cut(s) 474
XceI RCATGY 2 cut(s) 494, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 1170
XhoI CTCGAG 1 cut(s) 501
XspI CTAG 3 cut(s) 305, 371, 603
ZrmI AGTACT 1 cut(s) 1350
Zsp2I ATGCAT 2 cut(s) 136, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.