Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011725

Physical Location & Seq

Genomic Coordinates Reverse (-)

4504682 .. 4505649

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCGACCAATCCAATTGACGCCTGCTGGAGGTGTGACGCTAATTGGGCCAATAACCGAAAGAAGATTGTAGGCTGCGCCCAAGGCTTTGGTAAAAAGGCCACCGGAGGTAAGGACGGTCCCATTTACGTGGTGACTGTGGGCACAGATAATGACGTACAAAACCCCAAACCCGGAACCCTACGCCACGCCGTGATTCAGAAAGGGCCTTTGTGGATAATCTTCGCAAGAAGCATGGTGATTAGGCTGGAGCAAGAGCTGATGGTGACCAGTGACAAGACCATCGATGGTAGAGGAGCCAATGTTGTGATAGAAGAGGGTGGTGGCATTACCCTCCAGTTTGTGAAGAATGTAATCATCACCAACCTTCACATCAAAATGATTGTGTCCAAACCCGGTGGTATGATCAGGGACTCCGTCGACCACATGGGTTTGAGGACCAAGAGTGACGGCGATGGTATCTCCCTCTTTGGTGCCTCCAACGTGATGTTGTTTGGCGCCAACAACGCGCACACTCAAGACAAAATCATGCAAATTACTTTGGCCTTCAACCACTTTGGTCAGGGACTGGTGCAGAGGATGCCGAGGGTCCGGCACGGATTCTTCCACGTGGTGAACAACGACTACAACCACTGGATCATGTATGCCATCGGAGGAAACATGAACCCTACCATCATCAGCCAGGGTAACAGGTTCATTGCTCCCGCGAACGCGGCCACCAAACAGGTAACATACAGTTTACATGAATTAATTTTTATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

255

Amino Acids

27.91

Weight (kDa)

9.54

Isoelectric Point (pI)

23.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14420 AT2G02720
fragaria_vesca	FvH4_4g31900
malus_domestica	MD13G1078400.v1.1 MD16G1078000.v1.1 MD16G1078100.v1.1
prunus_persica	Prupe.1G268500_v2.0.a1 Prupe.1G268700_v2.0.a1
pyrus_communis	pycom13g06810 pycom16g06740 pycom16g06760
rosa_chinensis	RchiOBHm_Chr4g0440551
rosa_rugosa	Rorug04G0326600
rosa_samantha	Rh4AG378300 Rh4BG391000 Rh4CG405700 Rh4DG384700
rosa_wichuraiana	Rw4G032390 Rw4G032490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	473, 497
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	3 cut(s)	509, 707, 713
AciI	CCGC	2 cut(s)	705, 713
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	1 cut(s)	714
AcvI	CACGTG	1 cut(s)	610
AcyI	GRCGYC	2 cut(s)	21, 498
AdeI	CACNNNGTG	2 cut(s)	193, 613
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	30, 173
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	681
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
AlwI	GGATC	1 cut(s)	644
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	48, 99, 206, 543, 714
ApeKI	GCWGC	1 cut(s)	75
AseI	ATTAAT	2 cut(s)	749, 759
AspLEI	GCGC	3 cut(s)	80, 500, 511
AspS9I	GGNCC	5 cut(s)	48, 119, 206, 438, 589
AsuC2I	CCSGG	2 cut(s)	174, 396
AsuHPI	GGTGA	5 cut(s)	145, 250, 277, 352, 625
AvaII	GGWCC	3 cut(s)	119, 438, 589
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	2 cut(s)	473, 497
BbrPI	CACGTG	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	6 cut(s)	256, 281, 290, 449, 656, 680
BceAI	ACGGC	2 cut(s)	176, 466
BciT130I	CCWGG	1 cut(s)	683
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	2 cut(s)	174, 396
BfoI	RGCGCY	1 cut(s)	501
BisI	GCNGC	2 cut(s)	76, 714
BlsI	GCNGC	2 cut(s)	77, 715
Bme1390I	CCNGG	3 cut(s)	174, 396, 683
Bme18I	GGWCC	3 cut(s)	119, 438, 589
BmgT120I	GGNCC	5 cut(s)	48, 119, 206, 438, 589
BmiI	GGNNCC	6 cut(s)	121, 178, 298, 475, 499, 590
BmrFI	CCNGG	3 cut(s)	174, 396, 683
BmsI	GCATC	1 cut(s)	570
BpmI	CTGGAG	3 cut(s)	49, 269, 320
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	2 cut(s)	174, 396
Bsa29I	ATCGAT	1 cut(s)	285
BsaAI	YACGTR	2 cut(s)	130, 610
BsaHI	GRCGYC	2 cut(s)	21, 498
BsaJI	CCNNGG	3 cut(s)	82, 584, 682
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 173
Bse1I	ACTGG	4 cut(s)	270, 337, 573, 638
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	683
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	82, 584, 682
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	30, 173
BseMI	GCAATG	1 cut(s)	696
BseNI	ACTGG	4 cut(s)	270, 337, 573, 638
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	3 cut(s)	509, 707, 713
BshFI	GGCC	5 cut(s)	50, 101, 208, 545, 716
BshNI	GGYRCC	2 cut(s)	473, 497
BshVI	ATCGAT	1 cut(s)	285
BsiSI	CCGG	4 cut(s)	105, 174, 396, 592
BslFI	GGGAC	3 cut(s)	105, 425, 579
BslI	CCNNNNNNNGG	2 cut(s)	30, 173
BsmFI	GGGAC	3 cut(s)	105, 425, 579
BsnI	GGCC	5 cut(s)	50, 101, 208, 545, 716
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	405, 636
BspACI	CCGC	2 cut(s)	705, 713
BspANI	GGCC	5 cut(s)	50, 101, 208, 545, 716
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	3 cut(s)	509, 707, 713
BspLI	GGNNCC	6 cut(s)	121, 178, 298, 475, 499, 590
BspPI	GGATC	1 cut(s)	644
BspT107I	GGYRCC	2 cut(s)	473, 497
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	4 cut(s)	270, 337, 573, 638
BssECI	CCNNGG	3 cut(s)	82, 584, 682
BssMI	GATC	2 cut(s)	405, 636
BssNI	GRCGYC	2 cut(s)	21, 498
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	3 cut(s)	119, 139, 737
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	2 cut(s)	21, 498
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstBAI	YACGTR	2 cut(s)	130, 610
BstC8I	GCNNGC	1 cut(s)	25
BstEII	GGTNACC	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	585
BstFNI	CGCG	3 cut(s)	509, 707, 713
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	3 cut(s)	80, 500, 511
BstKTI	GATC	2 cut(s)	408, 639
BstMBI	GATC	2 cut(s)	405, 636
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 84, 506, 580, 713
BstNI	CCWGG	1 cut(s)	683
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	172, 394, 681
BstSLI	GKGCMC	1 cut(s)	146
BstUI	CGCG	3 cut(s)	509, 707, 713
BstV1I	GCAGC	1 cut(s)	62
BstXI	CCANNNNNNTGG	2 cut(s)	89, 130
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	50, 101, 208, 545, 716
BsuTUI	ATCGAT	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	277, 631
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	3 cut(s)	80, 500, 511
Cfr13I	GGNCC	5 cut(s)	48, 119, 206, 438, 589
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	2 cut(s)	29, 47
Csp6I	GTAC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	6 cut(s)	235, 427, 529, 640, 661, 743
CviQI	GTAC	1 cut(s)	158
DinI	GGCGCC	1 cut(s)	499
DpnI	GATC	2 cut(s)	407, 638
DpnII	GATC	2 cut(s)	405, 636
DraIII	CACNNNGTG	2 cut(s)	193, 613
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	82
Eco47I	GGWCC	3 cut(s)	119, 438, 589
Eco72I	CACGTG	1 cut(s)	610
Eco91I	GGTNACC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	82
EgeI	GGCGCC	1 cut(s)	499
EheI	GGCGCC	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	6 cut(s)	238, 430, 532, 643, 664, 746
FaiI	YATR	9 cut(s)	236, 404, 428, 530, 641, 645, 662, 733, 744
FaqI	GGGAC	3 cut(s)	105, 425, 579
FatI	CATG	6 cut(s)	234, 426, 528, 639, 660, 742
FauI	CCCGC	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	76, 714
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	76, 714
GlaI	GCGC	3 cut(s)	79, 499, 510
GluI	GCNGC	2 cut(s)	76, 714
GsuI	CTGGAG	3 cut(s)	49, 269, 320
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	5 cut(s)	50, 101, 208, 545, 716
HapII	CCGG	4 cut(s)	105, 174, 396, 592
HgaI	GACGC	2 cut(s)	29, 47
HhaI	GCGC	3 cut(s)	80, 500, 511
Hin1I	GRCGYC	2 cut(s)	21, 498
Hin1II	CATG	6 cut(s)	238, 430, 532, 643, 664, 746
Hin6I	GCGC	3 cut(s)	78, 498, 509
HinP1I	GCGC	3 cut(s)	78, 498, 509
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	196, 413, 600
HpaII	CCGG	4 cut(s)	105, 174, 396, 592
HphI	GGTGA	5 cut(s)	145, 250, 277, 352, 625
Hpy166II	GTNNAC	3 cut(s)	421, 616, 740
Hpy188I	TCNGA	2 cut(s)	201, 653
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	3 cut(s)	421, 616, 740
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	2 cut(s)	377, 556
HpyCH4III	ACNGT	3 cut(s)	119, 139, 737
HpyCH4IV	ACGT	4 cut(s)	129, 156, 483, 609
HpyCH4V	TGCA	2 cut(s)	532, 574
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 84, 506, 580, 713
HpySE526I	ACGT	4 cut(s)	129, 156, 483, 609
Hsp92I	GRCGYC	2 cut(s)	21, 498
Hsp92II	CATG	6 cut(s)	238, 430, 532, 643, 664, 746
HspAI	GCGC	3 cut(s)	78, 498, 509
KasI	GGCGCC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	405, 636
LmnI	GCTCC	3 cut(s)	250, 296, 706
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	570
MaeII	ACGT	4 cut(s)	129, 156, 483, 609
MaeIII	GTNAC	7 cut(s)	35, 133, 265, 272, 446, 686, 727
MalI	GATC	2 cut(s)	407, 638
MboI	GATC	2 cut(s)	405, 636
MboII	GAAGA	5 cut(s)	76, 214, 326, 358, 595
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	6 cut(s)	15, 43, 534, 746, 750, 760
Mly113I	GGCGCC	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	504
MseI	TTAA	2 cut(s)	749, 759
MslI	CAYNNNNRTG	2 cut(s)	128, 377
MspI	CCGG	4 cut(s)	105, 174, 396, 592
MspR9I	CCNGG	3 cut(s)	174, 396, 683
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	683
MvnI	CGCG	3 cut(s)	509, 707, 713
MwoI	GCNNNNNNNGC	5 cut(s)	47, 84, 506, 580, 713
NarI	GGCGCC	1 cut(s)	498
NciI	CCSGG	2 cut(s)	174, 396
NdeII	GATC	2 cut(s)	405, 636
NlaIII	CATG	6 cut(s)	238, 430, 532, 643, 664, 746
NlaIV	GGNNCC	6 cut(s)	121, 178, 298, 475, 499, 590
NmeAIII	GCCGAG	1 cut(s)	609
NmuCI	GTSAC	5 cut(s)	35, 133, 265, 272, 446
PfeI	GAWTC	2 cut(s)	196, 600
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	77, 715
PleI	GAGTC	1 cut(s)	407
PluTI	GGCGCC	1 cut(s)	501
PmaCI	CACGTG	1 cut(s)	610
PmlI	CACGTG	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	407
Ppu21I	YACGTR	2 cut(s)	130, 610
PshBI	ATTAAT	2 cut(s)	749, 759
Psp6I	CCWGG	1 cut(s)	681
PspCI	CACGTG	1 cut(s)	610
PspEI	GGTNACC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	6 cut(s)	121, 178, 298, 475, 499, 590
PspPI	GGNCC	5 cut(s)	48, 119, 206, 438, 589
PsrI	GAACNNNNNNTAC	2 cut(s)	608, 640
PstNI	CAGNNNCTG	1 cut(s)	568
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	2 cut(s)	128, 377
SalI	GTCGAC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	749, 759
SatI	GCNGC	2 cut(s)	76, 714
Sau3AI	GATC	2 cut(s)	405, 636
Sau96I	GGNCC	5 cut(s)	48, 119, 206, 438, 589
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	174, 396, 683
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	1 cut(s)	570
SfoI	GGCGCC	1 cut(s)	499
SinI	GGWCC	3 cut(s)	119, 438, 589
SmiMI	CAYNNNNRTG	2 cut(s)	128, 377
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	6 cut(s)	15, 43, 534, 746, 750, 760
SsiI	CCGC	2 cut(s)	705, 713
SspDI	GGCGCC	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	172, 394, 681
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	3 cut(s)	119, 139, 737
TaiI	ACGT	4 cut(s)	132, 159, 486, 612
TaqI	TCGA	2 cut(s)	285, 420
TasI	AATT	6 cut(s)	15, 43, 534, 746, 750, 760
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	2 cut(s)	196, 600
Tru1I	TTAA	2 cut(s)	749, 759
Tru9I	TTAA	2 cut(s)	749, 759
TscAI	CASTG	2 cut(s)	277, 638
TseFI	GTSAC	5 cut(s)	35, 133, 265, 272, 446
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	5 cut(s)	35, 133, 265, 272, 446
TspDTI	ATGAA	3 cut(s)	677, 685, 759
TspGWI	ACGGA	2 cut(s)	406, 612
TspRI	CASTG	2 cut(s)	277, 638
Tth111I	GACNNNGTC	1 cut(s)	416
VpaK11BI	GGWCC	3 cut(s)	119, 438, 589
VspI	ATTAAT	2 cut(s)	749, 759
XagI	CCTNNNNNAGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.