Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011725

Physical Location & Seq

Genomic Coordinates Forward (+)

762927 .. 765027

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTGAATCTTGGGAGCTACGTTTTCGTCTTTGTCGCGTTGTCTCTCACCGTGGTGGTTCCATCGGTTCAAGCCCACATCGCCGAATATGATGAATACTGGACGCAGCGTCAAACCAACGCATTGCGAGAAACTTTGGAATCTTATGACCCGAACCCAGAGAACGTCACGGACCACTTTAACTACCATGCCGCCTTAGCTATGGAGACGACAGGGATAGTAAACGAAACAAGGAGGGATCTCCGTCAGGTCGGACGCGGTAAGAAAACAACTAGACGTGGAGGAAGGTTTGAATCCCTAAACGCGATCGATAAATGCTGGCGAGGCGACAAAAACTGGGACAAAAACAGGAAAAAACTAGCAGATTGTGTCCTCGGATTTGGCCGGAAAACAACCGGAGGCAAAAACGGACCGATCTATGTAGTCACTGACCCATCCGACAACGATCTACTAAAACCAAAACCAGGGACTATAAGGCACGCCGTGACAAGGGACCGACCACTCTGGATCATCTTTGCGAGAAGCATGATCATAAAACTGCAACAAGAACTGATCATAACGAATGATAAAACAATCGACGGTCGGGGAGCGAAAATTTATATCACTGGGGGTGCAGGTTTAACGTTGCAGTTCGTCAGGAATGTGATAATACATAATATTCATATCAAACAGATTAAAAGGGGAGCTGGTGGGTTGATTATAGACTCCGAGCAACATTTTGGGCTTCGGACAGTGAGTGATGGCGATGGGATTAATATTTTTGGAGCAACGAATGTTTGGATCGATCATGTCTCAATGACGGATTGTTCTGATGGGATGATTGATGCGATCATGGGATCGACTGCAATTACTATCTCCAATTCCCATTTTACCGACCACGACGAGGTGATGCTATTTGGGGGTACAAACAAGGATGTGATCGACAAGAAAATGCAGATAACAGTTGCGTTTAACCATTTTGGTAAGAGATTGAAGCAAAGAATGCCTAGAGTCAGATTTGGTTTGGTCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGAAACATGAACCCTACCATTATAAGTCAAGGCAATCGTTTCATTGCTCCTCCTATTGAAGATTCCAAGCAGGTTACAAAGAGAGAGTACACACCTTATCCTGAATGGAAATCATGGAACTGGCAATCAGAGAAAGATTATTTCTTGAATGGAGCTTACTTTGTGCAATCAGGAAAGGCGAACGCGTGGAGCGCAACCCCAAAAAATCCAATCCCTAGAAAGTTTGCAATCCGGCCACAGCCAGGAACAAAGGTCAGAAGACTTACCAAGGATGCTGGTACGCTTGGCTGCAAACCTGGCAAGTCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

455

Amino Acids

51.26

Weight (kDa)

9.56

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pec_lyase_N	PF04431	26 - 81	1.5e-22	Pectate lyase, N terminus
Pectate_lyase_4	PF00544	186 - 380	5.2e-21	Pectate lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14420 AT2G02720
fragaria_vesca	FvH4_4g31900
malus_domestica	MD13G1078400.v1.1 MD16G1078000.v1.1 MD16G1078100.v1.1
prunus_persica	Prupe.1G268500_v2.0.a1 Prupe.1G268700_v2.0.a1
pyrus_communis	pycom13g06810 pycom16g06740 pycom16g06760
rosa_chinensis	RchiOBHm_Chr4g0440551
rosa_rugosa	Rorug04G0326600
rosa_samantha	Rh4AG378300 Rh4BG391000 Rh4CG405700 Rh4DG384700
rosa_wichuraiana	Rw4G032390 Rw4G032490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1079
Acc36I	ACCTGC	2 cut(s)	605, 1117
AccII	CGCG	4 cut(s)	38, 258, 305, 1241
AciI	CCGC	2 cut(s)	192, 258
AclI	AACGTT	1 cut(s)	623
AclWI	GGATC	4 cut(s)	246, 515, 788, 844
AcoI	YGGCCR	2 cut(s)	382, 1289
AcsI	RAATTY	1 cut(s)	594
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	3 cut(s)	904, 1145, 1336
AfiI	CCNNNNNNNGG	4 cut(s)	464, 489, 883, 1298
AflIII	ACRYGT	1 cut(s)	1239
AgsI	TTSAA	5 cut(s)	71, 293, 973, 1115, 1204
AhdI	GACNNNNNGTC	1 cut(s)	108
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	3 cut(s)	463, 1297, 1351
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	18, 200, 686, 1211
AluI	AGCT	4 cut(s)	18, 200, 686, 1211
Alw26I	GTCTC	3 cut(s)	48, 200, 796
AlwI	GGATC	4 cut(s)	246, 515, 788, 844
AoxI	GGCC	2 cut(s)	382, 1289
ApeKI	GCWGC	2 cut(s)	106, 1344
ApoI	RAATTY	1 cut(s)	594
AseI	ATTAAT	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	1250
AspS9I	GGNCC	4 cut(s)	172, 410, 493, 1006
AsuHPI	GGTGA	3 cut(s)	16, 40, 898
AvaII	GGWCC	4 cut(s)	172, 410, 493, 1006
BbsI	GAAGAC	1 cut(s)	1321
BbvI	GCAGC	2 cut(s)	118, 1331
BccI	CCATC	5 cut(s)	70, 442, 734, 740, 806
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	3 cut(s)	465, 1299, 1353
BclI	TGATCA	2 cut(s)	528, 552
BcoDI	GTCTC	3 cut(s)	48, 200, 796
BfaI	CTAG	4 cut(s)	273, 359, 987, 1272
BfuAI	ACCTGC	2 cut(s)	605, 1117
BisI	GCNGC	3 cut(s)	107, 192, 1345
BlsI	GCNGC	3 cut(s)	108, 193, 1346
Bme1390I	CCNGG	3 cut(s)	465, 1299, 1353
Bme18I	GGWCC	4 cut(s)	172, 410, 493, 1006
BmeRI	GACNNNNNGTC	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	4 cut(s)	172, 410, 493, 1006
BmiI	GGNNCC	2 cut(s)	60, 494
BmrFI	CCNGG	3 cut(s)	465, 1299, 1353
BmrI	ACTGGG	3 cut(s)	346, 615, 1045
BmsI	GCATC	3 cut(s)	814, 879, 1318
BmuI	ACTGGG	3 cut(s)	346, 615, 1045
BpiI	GAAGAC	1 cut(s)	1321
Bpu10I	CCTNAGC	1 cut(s)	196
Bsa29I	ATCGAT	2 cut(s)	309, 783
BsaJI	CCNNGG	4 cut(s)	51, 373, 464, 1323
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	4 cut(s)	464, 489, 883, 1298
Bse1I	ACTGG	5 cut(s)	104, 341, 610, 1040, 1181
Bse3DI	GCAATG	2 cut(s)	122, 1098
BseBI	CCWGG	3 cut(s)	465, 1299, 1353
BseCI	ATCGAT	2 cut(s)	309, 783
BseDI	CCNNGG	4 cut(s)	51, 373, 464, 1323
BseGI	GGATG	4 cut(s)	434, 822, 919, 1333
BseLI	CCNNNNNNNGG	4 cut(s)	464, 489, 883, 1298
BseMI	GCAATG	2 cut(s)	122, 1098
BseNI	ACTGG	5 cut(s)	104, 341, 610, 1040, 1181
BseRI	GAGGAG	1 cut(s)	1095
BseXI	GCAGC	2 cut(s)	118, 1331
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	4 cut(s)	38, 258, 305, 1241
Bsh1285I	CGRYCG	2 cut(s)	309, 583
BshFI	GGCC	2 cut(s)	384, 1291
BshVI	ATCGAT	2 cut(s)	309, 783
BsiEI	CGRYCG	2 cut(s)	309, 583
BsiSI	CCGG	3 cut(s)	385, 396, 1288
BslFI	GGGAC	3 cut(s)	353, 481, 506
BslI	CCNNNNNNNGG	4 cut(s)	464, 489, 883, 1298
BsmAI	GTCTC	3 cut(s)	48, 200, 796
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	3 cut(s)	353, 481, 506
BsmI	GAATGC	1 cut(s)	987
BsnI	GGCC	2 cut(s)	384, 1291
BspACI	CCGC	2 cut(s)	192, 258
BspANI	GGCC	2 cut(s)	384, 1291
BspDI	ATCGAT	2 cut(s)	309, 783
BspFNI	CGCG	4 cut(s)	38, 258, 305, 1241
BspLI	GGNNCC	2 cut(s)	60, 494
BspMI	ACCTGC	2 cut(s)	605, 1117
BspPI	GGATC	4 cut(s)	246, 515, 788, 844
BsrDI	GCAATG	2 cut(s)	122, 1098
BsrI	ACTGG	5 cut(s)	104, 341, 610, 1040, 1181
BssECI	CCNNGG	4 cut(s)	51, 373, 464, 1323
BssT1I	CCWWGG	1 cut(s)	1323
Bst2UI	CCWGG	3 cut(s)	465, 1299, 1353
Bst4CI	ACNGT	4 cut(s)	52, 581, 733, 943
BstAPI	GCANNNNNTGC	2 cut(s)	982, 1362
BstC8I	GCNNGC	2 cut(s)	320, 480
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	4 cut(s)	434, 822, 919, 1333
BstFNI	CGCG	4 cut(s)	38, 258, 305, 1241
BstHHI	GCGC	1 cut(s)	1250
BstMAI	GTCTC	3 cut(s)	48, 200, 796
BstMCI	CGRYCG	2 cut(s)	309, 583
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 197, 324, 982, 1247, 1353, 1362
BstNI	CCWGG	3 cut(s)	465, 1299, 1353
BstSCI	CCNGG	3 cut(s)	463, 1297, 1351
BstUI	CGCG	4 cut(s)	38, 258, 305, 1241
BstV1I	GCAGC	2 cut(s)	118, 1331
BstV2I	GAAGAC	1 cut(s)	1321
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	2 cut(s)	309, 783
BsuRI	GGCC	2 cut(s)	384, 1291
BsuTUI	ATCGAT	2 cut(s)	309, 783
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	2 cut(s)	64, 759
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	4 cut(s)	434, 822, 919, 1333
BtsIMutI	CAGTG	4 cut(s)	426, 603, 738, 1033
BveI	ACCTGC	2 cut(s)	605, 1117
Cac8I	GCNNGC	2 cut(s)	320, 480
CfoI	GCGC	1 cut(s)	1250
Cfr13I	GGNCC	4 cut(s)	172, 410, 493, 1006
ClaI	ATCGAT	2 cut(s)	309, 783
CpoI	CGGWCCG	1 cut(s)	410
CseI	GACGC	3 cut(s)	98, 112, 264
Csp6I	GTAC	3 cut(s)	903, 1144, 1335
CspI	CGGWCCG	1 cut(s)	410
CviAII	CATG	7 cut(s)	188, 526, 788, 832, 1010, 1063, 1170
CviQI	GTAC	3 cut(s)	903, 1144, 1335
DdeI	CTNAG	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	484
DriI	GACNNNNNGTC	1 cut(s)	108
EaeI	YGGCCR	2 cut(s)	382, 1289
Eam1105I	GACNNNNNGTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	1323
Eco47I	GGWCC	4 cut(s)	172, 410, 493, 1006
EcoRII	CCWGG	3 cut(s)	463, 1297, 1351
EcoT14I	CCWWGG	1 cut(s)	1323
ErhI	CCWWGG	1 cut(s)	1323
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	7 cut(s)	191, 529, 791, 835, 1013, 1066, 1173
FaqI	GGGAC	3 cut(s)	353, 481, 506
FatI	CATG	7 cut(s)	187, 525, 787, 831, 1009, 1062, 1169
FbaI	TGATCA	2 cut(s)	528, 552
Fnu4HI	GCNGC	3 cut(s)	107, 192, 1345
FokI	GGATG	4 cut(s)	421, 829, 926, 1340
Fsp4HI	GCNGC	3 cut(s)	107, 192, 1345
FspBI	CTAG	4 cut(s)	273, 359, 987, 1272
GlaI	GCGC	1 cut(s)	1249
GluI	GCNGC	3 cut(s)	107, 192, 1345
HaeIII	GGCC	2 cut(s)	384, 1291
HapII	CCGG	3 cut(s)	385, 396, 1288
HgaI	GACGC	3 cut(s)	98, 112, 264
HhaI	GCGC	1 cut(s)	1250
Hin1II	CATG	7 cut(s)	191, 529, 791, 835, 1013, 1066, 1173
Hin6I	GCGC	1 cut(s)	1248
HinP1I	GCGC	1 cut(s)	1248
HinfI	GANTC	6 cut(s)	7, 140, 293, 704, 990, 1118
HpaII	CCGG	3 cut(s)	385, 396, 1288
HphI	GGTGA	3 cut(s)	16, 40, 898
Hpy166II	GTNNAC	3 cut(s)	223, 1018, 1146
Hpy188I	TCNGA	9 cut(s)	254, 377, 439, 709, 729, 811, 995, 1186, 1313
Hpy188III	TCNNGA	5 cut(s)	505, 637, 1157, 1201, 1227
Hpy8I	GTNNAC	3 cut(s)	223, 1018, 1146
Hpy99I	CGWCG	2 cut(s)	581, 884
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	4 cut(s)	52, 581, 733, 943
HpyCH4IV	ACGT	4 cut(s)	21, 165, 277, 623
HpyCH4V	TGCA	9 cut(s)	541, 614, 628, 845, 934, 1049, 1222, 1283, 1347
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 197, 324, 982, 1247, 1353, 1362
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	4 cut(s)	21, 165, 277, 623
Hsp92II	CATG	7 cut(s)	191, 529, 791, 835, 1013, 1066, 1173
HspAI	GCGC	1 cut(s)	1248
Ksp22I	TGATCA	2 cut(s)	528, 552
LmnI	GCTCC	7 cut(s)	15, 587, 683, 764, 1108, 1208, 1245
Lsp1109I	GCAGC	2 cut(s)	118, 1331
LweI	GCATC	3 cut(s)	814, 879, 1318
MaeI	CTAG	4 cut(s)	273, 359, 987, 1272
MaeII	ACGT	4 cut(s)	21, 165, 277, 623
MaeIII	GTNAC	4 cut(s)	166, 424, 484, 1129
MboII	GAAGA	2 cut(s)	1127, 1326
MfeI	CAATTG	1 cut(s)	1050
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	4 cut(s)	594, 846, 859, 1050
MluI	ACGCGT	1 cut(s)	1239
MlyI	GAGTC	2 cut(s)	698, 999
MmeI	TCCRAC	2 cut(s)	232, 462
MnlI	CCTC	7 cut(s)	228, 275, 317, 383, 392, 877, 1116
MseI	TTAA	5 cut(s)	180, 620, 675, 753, 951
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	3 cut(s)	385, 396, 1288
MspR9I	CCNGG	3 cut(s)	465, 1299, 1353
MunI	CAATTG	1 cut(s)	1050
Mva1269I	GAATGC	1 cut(s)	987
MvaI	CCWGG	3 cut(s)	465, 1299, 1353
MvnI	CGCG	4 cut(s)	38, 258, 305, 1241
MwoI	GCNNNNNNNGC	7 cut(s)	80, 197, 324, 982, 1247, 1353, 1362
NlaIII	CATG	7 cut(s)	191, 529, 791, 835, 1013, 1066, 1173
NlaIV	GGNNCC	2 cut(s)	60, 494
NmuCI	GTSAC	3 cut(s)	166, 424, 484
OliI	CACNNNNGTG	1 cut(s)	53
PctI	GAATGC	1 cut(s)	987
PfeI	GAWTC	4 cut(s)	7, 140, 293, 1118
PkrI	GCNGC	3 cut(s)	108, 193, 1346
Ple19I	CGATCG	1 cut(s)	309
PleI	GAGTC	2 cut(s)	698, 998
PpsI	GAGTC	2 cut(s)	698, 998
PshBI	ATTAAT	1 cut(s)	753
PsiI	TTATAA	1 cut(s)	1079
Psp1406I	AACGTT	1 cut(s)	623
Psp6I	CCWGG	3 cut(s)	463, 1297, 1351
PspGI	CCWGG	3 cut(s)	463, 1297, 1351
PspN4I	GGNNCC	2 cut(s)	60, 494
PspPI	GGNCC	4 cut(s)	172, 410, 493, 1006
PsrI	GAACNNNNNNTAC	2 cut(s)	1010, 1042
PsuI	RGATCY	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	309
RsaI	GTAC	3 cut(s)	904, 1145, 1336
RsaNI	GTAC	3 cut(s)	903, 1144, 1335
RseI	CAYNNNNRTG	1 cut(s)	53
Rsr2I	CGGWCCG	1 cut(s)	410
RsrII	CGGWCCG	1 cut(s)	410
SaqAI	TTAA	5 cut(s)	180, 620, 675, 753, 951
SatI	GCNGC	3 cut(s)	107, 192, 1345
Sau96I	GGNCC	4 cut(s)	172, 410, 493, 1006
SchI	GAGTC	2 cut(s)	698, 999
ScrFI	CCNGG	3 cut(s)	465, 1299, 1353
SfaNI	GCATC	3 cut(s)	814, 879, 1318
SinI	GGWCC	4 cut(s)	172, 410, 493, 1006
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	594, 846, 859, 1050
SsiI	CCGC	2 cut(s)	192, 258
SspI	AATATT	2 cut(s)	658, 757
SspMI	CTAG	4 cut(s)	273, 359, 987, 1272
StyD4I	CCNGG	3 cut(s)	463, 1297, 1351
StyI	CCWWGG	1 cut(s)	1323
TaaI	ACNGT	4 cut(s)	52, 581, 733, 943
TaiI	ACGT	4 cut(s)	24, 168, 280, 626
TaqI	TCGA	5 cut(s)	309, 576, 783, 839, 921
TaqII	GACCGA	2 cut(s)	427, 510
TasI	AATT	4 cut(s)	594, 846, 859, 1050
TatI	WGTACW	1 cut(s)	1143
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	4 cut(s)	7, 140, 293, 1118
Tru1I	TTAA	5 cut(s)	180, 620, 675, 753, 951
Tru9I	TTAA	5 cut(s)	180, 620, 675, 753, 951
TscAI	CASTG	4 cut(s)	433, 610, 738, 1040
TseFI	GTSAC	3 cut(s)	166, 424, 484
TseI	GCWGC	2 cut(s)	106, 1344
Tsp45I	GTSAC	3 cut(s)	166, 424, 484
TspDTI	ATGAA	4 cut(s)	108, 650, 1079, 1087
TspGWI	ACGGA	4 cut(s)	185, 233, 423, 815
TspRI	CASTG	4 cut(s)	433, 610, 738, 1040
VpaK11BI	GGWCC	4 cut(s)	172, 410, 493, 1006
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	1 cut(s)	594
XspI	CTAG	4 cut(s)	273, 359, 987, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.