Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011725

Physical Location & Seq

Genomic Coordinates Reverse (-)

4373895 .. 4375445

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGACCAACCCAATGGACGCCTGCTGGAGGTGTGACCCTAACTGGGCCAACAACCGAAAGAAGATTGTAGGCTGCGCCCAAGGCTTCGGTAAAAAGACCACCGGAGGTAAGGATGGTCCTTTTTACGTGGTGACAATGGGCACAGATGATGACGTGCAAAACCCTAAACCCGGAACCCTACGCCACCAAGAGCTGATGGTGAGTAGTGACAAGACCATTGATGGTAGGGGAGCCAATGTTGTGATAGAAGAGGGTGCTGGCATTACCCTCCAGTTTGTGAAGAATGTAATCATCACCAACCTTCACATAAAAATGATTGTCACCAAACCCGGTGGTCTGATCAGGGACTCTGTCGACCACATAGGTTTAAGGACCCAGAGTGACGGCGATGGTATCTCCCTCTTTGGTGCCTCCAACGTCTGGATCGATCACGTTTCCATGTCCAGGTGCGCAGATGGGCTCATCGACGCCATCATGGGTTCCACCGCCATCACCATCTCCAACTCTCACTTCACTGACCACGATGAGGCGATGTTGTTTGGTGCCAACAACGCCCACACTCAAGACAAAATCATGCAAATTACTTTGGCCTTCAACCACTTTGGTAAGGGACTGGTGCAAAGGATGCCAAGGGTCCGGCACGGATTCTTCCACGTGGTGAACAACGACTACACCCACTGGATCATGTATGCCATCGGAGGAAACATGAACCCTACCATCATCAGCCAGGATTTGATGATGAATGGAGCTTTCTTTGTTGAATCTGGATCAGGAGCCACCAACCACCCAGCAAAGTTGGACATGATGCCCTTCAAACCAGGGACCTTTGTCGGAACGCTCACAAAATTTTCCGGTGCTCTAAACTGCGTTGTCGGCAAACCCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

297

Amino Acids

32.13

Weight (kDa)

7.19

Isoelectric Point (pI)

21.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14420 AT2G02720
fragaria_vesca	FvH4_4g31900
malus_domestica	MD13G1078400.v1.1 MD16G1078000.v1.1 MD16G1078100.v1.1
prunus_persica	Prupe.1G268500_v2.0.a1 Prupe.1G268700_v2.0.a1
pyrus_communis	pycom13g06810 pycom16g06740 pycom16g06760
rosa_chinensis	RchiOBHm_Chr4g0440551
rosa_rugosa	Rorug04G0326600
rosa_samantha	Rh4AG378300 Rh4BG391000 Rh4CG405700 Rh4DG384700
rosa_wichuraiana	Rw4G032390 Rw4G032490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	454
AccB1I	GGYRCC	2 cut(s)	410, 545
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	3 cut(s)	434, 692, 778
AcsI	RAATTY	1 cut(s)	848
AcvI	CACGTG	1 cut(s)	658
AcyI	GRCGYC	2 cut(s)	21, 471
AdeI	CACNNNGTG	1 cut(s)	661
AfiI	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
AgsI	TTSAA	3 cut(s)	598, 764, 817
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	3 cut(s)	446, 729, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	2 cut(s)	196, 752
AluI	AGCT	2 cut(s)	196, 752
Alw21I	GWGCWC	1 cut(s)	862
AlwI	GGATC	3 cut(s)	434, 692, 778
AoxI	GGCC	2 cut(s)	48, 591
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	848
AspLEI	GCGC	2 cut(s)	80, 455
AspS9I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
AsuC2I	CCSGG	2 cut(s)	174, 333
AsuHPI	GGTGA	6 cut(s)	145, 214, 289, 316, 487, 673
AvaII	GGWCC	4 cut(s)	119, 375, 637, 825
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	2 cut(s)	410, 545
BanII	GRGCYC	1 cut(s)	465
BbrPI	CACGTG	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	3 cut(s)	448, 731, 822
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	174, 333
BfaI	CTAG	1 cut(s)	889
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	5 cut(s)	174, 333, 448, 731, 822
Bme18I	GGWCC	4 cut(s)	119, 375, 637, 825
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
BmiI	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
BmrFI	CCNGG	5 cut(s)	174, 333, 448, 731, 822
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	618, 798
BmuI	ACTGGG	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	830
BpmI	CTGGAG	2 cut(s)	49, 257
BpuEI	CTTGAG	1 cut(s)	549
BpuMI	CCSGG	2 cut(s)	174, 333
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	2 cut(s)	130, 658
BsaHI	GRCGYC	2 cut(s)	21, 471
BsaJI	CCNNGG	3 cut(s)	82, 632, 821
BsaWI	WCCGGW	2 cut(s)	104, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
Bse1I	ACTGG	4 cut(s)	50, 274, 621, 686
BseBI	CCWGG	3 cut(s)	448, 731, 822
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	82, 632, 821
BseGI	GGATG	2 cut(s)	121, 633
BseLI	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
BseNI	ACTGG	4 cut(s)	50, 274, 621, 686
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	790
BshFI	GGCC	2 cut(s)	50, 593
BshNI	GGYRCC	2 cut(s)	410, 545
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	5 cut(s)	105, 174, 333, 640, 855
BslFI	GGGAC	3 cut(s)	362, 627, 838
BslI	CCNNNNNNNGG	6 cut(s)	30, 46, 173, 423, 447, 529
BsmFI	GGGAC	3 cut(s)	362, 627, 838
BsnI	GGCC	2 cut(s)	50, 593
Bsp1286I	GDGCHC	3 cut(s)	146, 465, 862
Bsp143I	GATC	5 cut(s)	342, 426, 430, 684, 770
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	2 cut(s)	50, 593
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
BspPI	GGATC	3 cut(s)	434, 692, 778
BspT107I	GGYRCC	2 cut(s)	410, 545
BsrI	ACTGG	4 cut(s)	50, 274, 621, 686
BssECI	CCNNGG	3 cut(s)	82, 632, 821
BssMI	GATC	5 cut(s)	342, 426, 430, 684, 770
BssNI	GRCGYC	2 cut(s)	21, 471
BssT1I	CCWWGG	2 cut(s)	82, 632
Bst2UI	CCWGG	3 cut(s)	448, 731, 822
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	2 cut(s)	21, 471
BstAPI	GCANNNNNTGC	2 cut(s)	628, 885
BstBAI	YACGTR	2 cut(s)	130, 658
BstC8I	GCNNGC	2 cut(s)	25, 262
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	121, 633
BstHHI	GCGC	2 cut(s)	80, 455
BstKTI	GATC	5 cut(s)	345, 429, 433, 687, 773
BstMBI	GATC	5 cut(s)	342, 426, 430, 684, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 554, 628, 876, 885
BstNI	CCWGG	3 cut(s)	448, 731, 822
BstPAI	GACNNNNGTC	1 cut(s)	830
BstSCI	CCNGG	5 cut(s)	172, 331, 446, 729, 820
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	50, 593
BsuTUI	ATCGAT	1 cut(s)	429
BtgZI	GCGATG	2 cut(s)	405, 548
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	121, 633
BtsIMutI	CAGTG	2 cut(s)	516, 679
Cac8I	GCNNGC	2 cut(s)	25, 262
CfoI	GCGC	2 cut(s)	80, 455
Cfr13I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
ClaI	ATCGAT	1 cut(s)	429
CseI	GACGC	2 cut(s)	29, 479
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	6 cut(s)	442, 478, 577, 688, 709, 805
DpnI	GATC	5 cut(s)	344, 428, 432, 686, 772
DpnII	GATC	5 cut(s)	342, 426, 430, 684, 770
DraIII	CACNNNGTG	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	82, 632
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	4 cut(s)	119, 375, 637, 825
Eco72I	CACGTG	1 cut(s)	658
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoO109I	RGGNCCY	2 cut(s)	375, 825
EcoRII	CCWGG	3 cut(s)	446, 729, 820
EcoT14I	CCWWGG	2 cut(s)	82, 632
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	82, 632
FaeI	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
FaiI	YATR	9 cut(s)	311, 365, 443, 479, 578, 689, 693, 710, 806
FaqI	GGGAC	3 cut(s)	362, 627, 838
FatI	CATG	6 cut(s)	441, 477, 576, 687, 708, 804
FbaI	TGATCA	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	2 cut(s)	128, 640
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	889
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	2 cut(s)	79, 454
GluI	GCNGC	1 cut(s)	76
GsaI	CCCAGC	1 cut(s)	794
GsuI	CTGGAG	2 cut(s)	49, 257
HaeIII	GGCC	2 cut(s)	50, 593
HapII	CCGG	5 cut(s)	105, 174, 333, 640, 855
HgaI	GACGC	2 cut(s)	29, 479
HhaI	GCGC	2 cut(s)	80, 455
Hin1I	GRCGYC	2 cut(s)	21, 471
Hin1II	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
Hin6I	GCGC	2 cut(s)	78, 453
HinP1I	GCGC	2 cut(s)	78, 453
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	350, 648, 764
HpaII	CCGG	5 cut(s)	105, 174, 333, 640, 855
HphI	GGTGA	6 cut(s)	145, 214, 289, 316, 487, 673
Hpy166II	GTNNAC	2 cut(s)	358, 664
Hpy188I	TCNGA	3 cut(s)	342, 701, 836
Hpy188III	TCNNGA	4 cut(s)	424, 566, 768, 774
Hpy8I	GTNNAC	2 cut(s)	358, 664
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	314, 604, 823
HpyCH4IV	ACGT	5 cut(s)	129, 156, 420, 435, 657
HpyCH4V	TGCA	3 cut(s)	160, 580, 622
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 554, 628, 876, 885
HpySE526I	ACGT	5 cut(s)	129, 156, 420, 435, 657
Hsp92I	GRCGYC	2 cut(s)	21, 471
Hsp92II	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
HspAI	GCGC	2 cut(s)	78, 453
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	342, 426, 430, 684, 770
LmnI	GCTCC	3 cut(s)	233, 749, 776
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	618, 798
MaeI	CTAG	1 cut(s)	889
MaeII	ACGT	5 cut(s)	129, 156, 420, 435, 657
MaeIII	GTNAC	5 cut(s)	35, 133, 209, 322, 383
MalI	GATC	5 cut(s)	344, 428, 432, 686, 772
MboI	GATC	5 cut(s)	342, 426, 430, 684, 770
MboII	GAAGA	4 cut(s)	76, 263, 295, 643
MhlI	GDGCHC	3 cut(s)	146, 465, 862
MluCI	AATT	2 cut(s)	582, 848
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	4 cut(s)	441, 528, 780, 814
MnlI	CCTC	8 cut(s)	24, 101, 247, 281, 413, 424, 523, 695
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	5 cut(s)	105, 174, 333, 640, 855
MspR9I	CCNGG	5 cut(s)	174, 333, 448, 731, 822
MvaI	CCWGG	3 cut(s)	448, 731, 822
MwoI	GCNNNNNNNGC	5 cut(s)	84, 554, 628, 876, 885
NciI	CCSGG	2 cut(s)	174, 333
NdeII	GATC	5 cut(s)	342, 426, 430, 684, 770
NlaIII	CATG	6 cut(s)	445, 481, 580, 691, 712, 808
NlaIV	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
NmuCI	GTSAC	5 cut(s)	35, 133, 209, 322, 383
NsbI	TGCGCA	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	648, 764
PflFI	GACNNNGTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	344
PmaCI	CACGTG	1 cut(s)	658
PmlI	CACGTG	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	344
Ppu21I	YACGTR	2 cut(s)	130, 658
PpuMI	RGGWCCY	2 cut(s)	375, 825
PshAI	GACNNNNGTC	1 cut(s)	830
Psp5II	RGGWCCY	2 cut(s)	375, 825
Psp6I	CCWGG	3 cut(s)	446, 729, 820
PspCI	CACGTG	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	790
PspGI	CCWGG	3 cut(s)	446, 729, 820
PspN4I	GGNNCC	9 cut(s)	178, 235, 377, 412, 484, 547, 638, 778, 826
PspPI	GGNCC	5 cut(s)	48, 119, 375, 637, 825
PspPPI	RGGWCCY	2 cut(s)	375, 825
PsrI	GAACNNNNNNTAC	2 cut(s)	656, 688
PsyI	GACNNNGTC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	5 cut(s)	342, 426, 430, 684, 770
Sau96I	GGNCC	5 cut(s)	48, 119, 375, 637, 825
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	5 cut(s)	174, 333, 448, 731, 822
SduI	GDGCHC	3 cut(s)	146, 465, 862
SfaNI	GCATC	2 cut(s)	618, 798
SinI	GGWCC	4 cut(s)	119, 375, 637, 825
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	2 cut(s)	582, 848
SsiI	CCGC	1 cut(s)	489
SspMI	CTAG	1 cut(s)	889
StyD4I	CCNGG	5 cut(s)	172, 331, 446, 729, 820
StyI	CCWWGG	2 cut(s)	82, 632
TaiI	ACGT	5 cut(s)	132, 159, 423, 438, 660
TaqI	TCGA	3 cut(s)	357, 429, 468
TasI	AATT	2 cut(s)	582, 848
TfiI	GAWTC	2 cut(s)	648, 764
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	523, 686
TseFI	GTSAC	5 cut(s)	35, 133, 209, 322, 383
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	5 cut(s)	35, 133, 209, 322, 383
TspDTI	ATGAA	2 cut(s)	725, 758
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	523, 686
Tth111I	GACNNNGTC	1 cut(s)	353
Van91I	CCANNNNNTGG	1 cut(s)	423
VpaK11BI	GGWCC	4 cut(s)	119, 375, 637, 825
XagI	CCTNNNNNAGG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.