AT1G15230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011181
Physical Location & Seq
Reverse (-)
5242073 .. 5243262
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15230.1

Sequence Viewer

Length: 468 bp
ATGGAGGCTACGAAAGAAAGAGTTGGCTTGCTCGATACGATCCTCCCGCCGGCACTTGCAGACGCCGGTCTCGAGGATTGTGCTCTGCCGCCGGAATCTATTCAGGAAGCATTTCGCAAAGCCGCTAACGCCGTGAAGTCTCGCGCAGCGTCGATATTCGACCACGAGGAGGAAGACGGTTGTTTAGCGGATCCTATTCCGGAAACTGCAGACAAGATTATCGTTGGAGGAGACAATGAAAGGGATACTGGGCCGTGTTTAGCTGGAAAAGGCATTGAGAAGTTGGCTGAATCGAAACAGGCCGGAGATTTGGTGGTGGCTGGCGAAGGAGAAGAAGGGAAGAGCTGCGTTGATGGTTTGAAGGATCTAGATGTTGAAGGTATTGAGAGAAGCAGTGAGAAGAAGGATCAGAGTGATGAAGATGAAGAAGAGGAGATGAAACCGATCTTGGTTGAAGGATTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.47

Weight (kDa)

4.21

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 4 cut(s) 47, 89, 123, 188
AclWI GGATC 5 cut(s) 34, 185, 198, 372, 414
AcyI GRCGYC 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 49, 169
AgsI TTSAA 3 cut(s) 361, 377, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 2 cut(s) 263, 345
AluI AGCT 2 cut(s) 263, 345
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 3 cut(s) 74, 144, 225
AlwI GGATC 5 cut(s) 34, 185, 198, 372, 414
Ama87I CYCGRG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 2 cut(s) 251, 300
ApeKI GCWGC 2 cut(s) 146, 345
Asp700I GAANNNNTTC 2 cut(s) 99, 111
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 71
BamHI GGATCC 1 cut(s) 190
BauI CACGAG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 158, 332
BccI CCATC 1 cut(s) 347
BceAI ACGGC 2 cut(s) 116, 238
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 74, 144, 225
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 207
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 4 cut(s) 89, 123, 147, 346
BlsI GCNGC 4 cut(s) 90, 124, 148, 347
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 258
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 169
Bse118I RCCGGY 2 cut(s) 49, 65
Bse1I ACTGG 1 cut(s) 253
BseAI TCCGGA 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 49, 169
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 3 cut(s) 182, 243, 446
BseXI GCAGC 2 cut(s) 158, 332
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 253, 302
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 5 cut(s) 50, 66, 92, 200, 303
BslI CCNNNNNNNGG 2 cut(s) 49, 169
BsmAI GTCTC 3 cut(s) 74, 144, 225
BsnI GGCC 2 cut(s) 253, 302
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 5 cut(s) 39, 190, 364, 406, 444
BspACI CCGC 4 cut(s) 47, 89, 123, 188
BspANI GGCC 2 cut(s) 253, 302
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 5 cut(s) 34, 185, 198, 372, 414
BspQI GCTCTTC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 74
BsrFI RCCGGY 2 cut(s) 49, 65
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 2 cut(s) 49, 65
BssMI GATC 5 cut(s) 39, 190, 364, 406, 444
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 335, 423
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 29, 51, 322
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 5 cut(s) 42, 193, 367, 409, 447
BstMAI GTCTC 3 cut(s) 74, 144, 225
BstMBI GATC 5 cut(s) 39, 190, 364, 406, 444
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 158, 332
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 2 cut(s) 190, 364
BstYI RGATCY 2 cut(s) 190, 364
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 253, 302
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 3 cut(s) 29, 51, 322
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 2 cut(s) 49, 65
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 2 cut(s) 71, 138
CviJI RGCY 9 cut(s) 8, 27, 122, 253, 263, 287, 302, 320, 345
CviKI_1 RGCY 9 cut(s) 8, 27, 122, 253, 263, 287, 302, 320, 345
DpnI GATC 5 cut(s) 41, 192, 366, 408, 446
DpnII GATC 5 cut(s) 39, 190, 364, 406, 444
Eam1104I CTCTTC 2 cut(s) 335, 423
EarI CTCTTC 2 cut(s) 335, 423
Eco31I GGTCTC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 71
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 89, 123, 147, 346
Fsp4HI GCNGC 4 cut(s) 89, 123, 147, 346
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 145
GluI GCNGC 4 cut(s) 89, 123, 147, 346
HaeIII GGCC 2 cut(s) 253, 302
HapII CCGG 5 cut(s) 50, 66, 92, 200, 303
HgaI GACGC 2 cut(s) 71, 138
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 2 cut(s) 95, 290
HpaII CCGG 5 cut(s) 50, 66, 92, 200, 303
Hpy188I TCNGA 2 cut(s) 411, 467
Hpy188III TCNNGA 4 cut(s) 71, 104, 200, 368
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 6 cut(s) 320, 329, 355, 371, 397, 449
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 59, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 1 cut(s) 144
Kpn2I TCCGGA 1 cut(s) 199
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
Kzo9I GATC 5 cut(s) 39, 190, 364, 406, 444
LguI GCTCTTC 1 cut(s) 335
Lsp1109I GCAGC 2 cut(s) 158, 332
MaeI CTAG 1 cut(s) 368
MalI GATC 5 cut(s) 41, 192, 366, 408, 446
MboI GATC 5 cut(s) 39, 190, 364, 406, 444
MboII GAAGA 7 cut(s) 185, 344, 352, 412, 431, 437, 440
MflI RGATCY 2 cut(s) 190, 364
MhlI GDGCHC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 53, 67, 160, 163, 221, 424
MroI TCCGGA 1 cut(s) 199
MroNI GCCGGC 1 cut(s) 49
MroXI GAANNNNTTC 2 cut(s) 99, 111
MspI CCGG 5 cut(s) 50, 66, 92, 200, 303
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 51
NdeII GATC 5 cut(s) 39, 190, 364, 406, 444
NgoMIV GCCGGC 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 51
PdmI GAANNNNTTC 2 cut(s) 99, 111
PfeI GAWTC 2 cut(s) 95, 290
PkrI GCNGC 4 cut(s) 90, 124, 148, 347
PshAI GACNNNNGTC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 2 cut(s) 190, 364
SapI GCTCTTC 1 cut(s) 335
SatI GCNGC 4 cut(s) 89, 123, 147, 346
Sau3AI GATC 5 cut(s) 39, 190, 364, 406, 444
Sau96I GGNCC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 85
SetI ASST 3 cut(s) 265, 347, 382
SfcI CTRYAG 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SsiI CCGC 4 cut(s) 47, 89, 123, 188
SspMI CTAG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 5 cut(s) 33, 72, 152, 159, 293
TauI GCSGC 2 cut(s) 91, 125
TfiI GAWTC 2 cut(s) 95, 290
TscAI CASTG 1 cut(s) 400
TseI GCWGC 2 cut(s) 146, 345
TspDTI ATGAA 4 cut(s) 252, 432, 438, 452
TspRI CASTG 1 cut(s) 400
XbaI TCTAGA 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 71
XmnI GAANNNNTTC 2 cut(s) 99, 111
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.