Rorug02G0352000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011181
Physical Location & Seq
Reverse (-)
44280455 .. 44282789
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0352000.1

Sequence Viewer

Length: 504 bp
ATGAGGTCACTTGAGCTTCTACCTCCTTTAGGGACATTGCCATTCCTTGAAGCGTTGGAAATAAAGGGATTGGGAGGGTCAAGCCTCCAAGTTGTAATGGCTGGATTCCCCAAGACCGAATGCCCCCATCCTCAGTTGGGCCTCTTTTTCCAAATCTCTTGGAACAAGCAGAGATTTTCCAAGAGAATAGCTCTAGTGAATGTTATAATCTACTTAAGGCGATCAGTGGGTAGTGAAATTAATAGTAACAACATTCATCATGTGGATATTGCTTCTGGCTTGTACCCTAGACAGTTCTGTTATCCCATCTCACTAAAATGTCAGCACTTGCTACTAAACCAGTTGAATGCGACTGCAGTGTCGCAGACATTTGAAAGCAGTTCTTTCTGTGGTTTATTTCTCTGTCCTTGCCGGGTCCTCTTCTGCCCTTCTATCCCCCAAGTTCACTTGCTTCAGGCTGAGTCCTTGATCTTTCCCCAATATCTAGCAGGGTTGAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.64

Weight (kDa)

8.93

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AasI GACNNNNNNGTC 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 29, 137
AflII CTTAAG 1 cut(s) 214
AgsI TTSAA 4 cut(s) 50, 346, 374, 496
AluBI AGCT 2 cut(s) 16, 191
AluI AGCT 2 cut(s) 16, 191
AoxI GGCC 1 cut(s) 139
AseI ATTAAT 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 139, 415
AsuC2I CCSGG 1 cut(s) 413
AvaII GGWCC 1 cut(s) 415
BccI CCATC 2 cut(s) 135, 314
BcnI CCSGG 1 cut(s) 413
BfaI CTAG 3 cut(s) 194, 288, 485
BfmI CTRYAG 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 214
BglII AGATCT 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 139, 415
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 413
BplI GAGNNNNNCTC 2 cut(s) 175, 207
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 413
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 137
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 35
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 29, 137
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 146, 450
BseNI ACTGG 1 cut(s) 340
BshFI GGCC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 412
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 29, 137
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 2 cut(s) 125, 352
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 221, 468, 498
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 2 cut(s) 145, 451
BspLI GGNNCC 1 cut(s) 416
BspMAI CTGCAG 1 cut(s) 358
BspTI CTTAAG 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 340
BssMI GATC 3 cut(s) 221, 468, 498
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 425
BstAFI CTTAAG 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 132, 459
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 3 cut(s) 224, 471, 501
BstMBI GATC 3 cut(s) 221, 468, 498
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 231, 363
Cfr13I GGNCC 2 cut(s) 139, 415
Csp6I GTAC 1 cut(s) 283
CviAII CATG 1 cut(s) 260
CviJI RGCY 7 cut(s) 16, 84, 101, 141, 191, 279, 458
CviKI_1 RGCY 7 cut(s) 16, 84, 101, 141, 191, 279, 458
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 132, 459
DpnI GATC 3 cut(s) 223, 470, 500
DpnII GATC 3 cut(s) 221, 468, 498
DrdI GACNNNNNNGTC 1 cut(s) 358
DseDI GACNNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 415
FaeI CATG 1 cut(s) 263
FaiI YATR 2 cut(s) 206, 261
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 259
FokI GGATG 1 cut(s) 114
FspBI CTAG 3 cut(s) 194, 288, 485
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 412
Hin1II CATG 1 cut(s) 263
HinfI GANTC 2 cut(s) 105, 461
HpaII CCGG 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 445
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 438
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 132, 459
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 3 cut(s) 221, 468, 498
LpnPI CCDG 6 cut(s) 87, 261, 353, 425, 440, 474
MaeI CTAG 3 cut(s) 194, 288, 485
MaeIII GTNAC 2 cut(s) 6, 245
MalI GATC 3 cut(s) 223, 470, 500
MboI GATC 3 cut(s) 221, 468, 498
MboII GAAGA 1 cut(s) 412
MflI RGATCY 1 cut(s) 498
MluCI AATT 1 cut(s) 237
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 6 cut(s) 33, 68, 95, 141, 152, 428
MseI TTAA 2 cut(s) 215, 240
MslI CAYNNNNRTG 1 cut(s) 316
MspCI CTTAAG 1 cut(s) 214
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 413
Mva1269I GAATGC 2 cut(s) 125, 352
NciI CCSGG 1 cut(s) 413
NdeII GATC 3 cut(s) 221, 468, 498
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 6
PctI GAATGC 2 cut(s) 125, 352
PfeI GAWTC 1 cut(s) 105
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 2 cut(s) 139, 415
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 316
SaqAI TTAA 2 cut(s) 215, 240
Sau3AI GATC 3 cut(s) 221, 468, 498
Sau96I GGNCC 2 cut(s) 139, 415
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 413
SetI ASST 4 cut(s) 8, 18, 25, 193
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 316
SmlI CTYRAG 2 cut(s) 11, 214
SmoI CTYRAG 2 cut(s) 11, 214
Sse9I AATT 1 cut(s) 237
SspMI CTAG 3 cut(s) 194, 288, 485
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 294
TaqII GACCGA 1 cut(s) 131
TasI AATT 1 cut(s) 237
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 2 cut(s) 215, 240
Tru9I TTAA 2 cut(s) 215, 240
TscAI CASTG 2 cut(s) 231, 363
TseFI GTSAC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 231, 363
Vha464I CTTAAG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 415
VspI ATTAAT 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 27
XspI CTAG 3 cut(s) 194, 288, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.