MD17G1192500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011181
Physical Location & Seq
Reverse (-)
23023889 .. 23024462
574 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1192500.v1.1.491

Sequence Viewer

Length: 510 bp
ATGAAGGCCACCGAGAATAAAGCAGCTGGGATACTGCACCACATCCTCCCTCCGCGTCTCGAAGACGCCGGCCTCGAAGACTGCGCCCTCCCGTTAGACTCCATCAAGGAAGCCTTCCTCAAAGCAGCAACGGCCGTCAAGTCGCCCGCCACCTCGATCTTTACCTCCGACGAAGACGAAGAATCGTTCGAAGATTGCGTCAATGACACCTGGCCGGACATGAGGGATCACACCGGCGAGCTGGTCGGAGCCGAGCCGGAGACTCGGTCGGCGGGATCGTGCGGCGGAGACAAGGGCGGGTCGGTGGAGGTCGGCGGAGATGAAGTGATGGTCGGCGGCGAGAAGGAGAAAGGGGATAAGGTGATCGTGGGAGGTGAGGACGTGAGAGGTGGTGGGGAGAGGGATTGTGTGGATGGATTGGCGGGATTAGAGATCGGAGAGAAGAAGAAGGGTGAGGAGGAGGAAGAGACAGATGGCGGAGGACCAATTTTGGTAGGAGGTTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

17.55

Weight (kDa)

4.3

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 55
AclWI GGATC 2 cut(s) 234, 283
AcoI YGGCCR 2 cut(s) 132, 212
AcyI GRCGYC 1 cut(s) 66
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 2 cut(s) 26, 241
AluI AGCT 2 cut(s) 26, 241
Alw26I GTCTC 4 cut(s) 62, 254, 282, 461
AlwI GGATC 2 cut(s) 234, 283
AoxI GGCC 4 cut(s) 6, 70, 132, 212
ApeKI GCWGC 2 cut(s) 23, 125
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 373, 386, 464
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 482
BbsI GAAGAC 3 cut(s) 69, 84, 180
BbvI GCAGC 2 cut(s) 35, 137
BccI CCATC 4 cut(s) 110, 322, 407, 467
BceAI ACGGC 2 cut(s) 119, 147
BciT130I CCWGG 1 cut(s) 211
BciVI GTATCC 1 cut(s) 24
BcoDI GTCTC 4 cut(s) 62, 254, 282, 461
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 4 cut(s) 24, 126, 283, 337
BlsI GCNGC 4 cut(s) 25, 127, 284, 338
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 482
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 211
BpiI GAAGAC 3 cut(s) 69, 84, 180
Bpu14I TTCGAA 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 66
BsaXI ACNNNNNCTCC 5 cut(s) 251, 281, 309, 339, 489
Bse118I RCCGGY 2 cut(s) 68, 233
BseBI CCWGG 1 cut(s) 211
BseGI GGATG 2 cut(s) 42, 418
BseRI GAGGAG 2 cut(s) 470, 473
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 35, 137
BseYI CCCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 55
Bsh1285I CGRYCG 2 cut(s) 135, 269
BshFI GGCC 4 cut(s) 8, 72, 134, 214
BsiEI CGRYCG 2 cut(s) 135, 269
BsiSI CCGG 4 cut(s) 69, 215, 234, 257
BsmAI GTCTC 4 cut(s) 62, 254, 282, 461
BsmBI CGTCTC 1 cut(s) 62
BsnI GGCC 4 cut(s) 8, 72, 134, 214
Bsp119I TTCGAA 1 cut(s) 189
Bsp143I GATC 5 cut(s) 156, 226, 275, 363, 432
BspANI GGCC 4 cut(s) 8, 72, 134, 214
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 2 cut(s) 234, 283
BspT104I TTCGAA 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 68, 233
BssAI RCCGGY 2 cut(s) 68, 233
BssMI GATC 5 cut(s) 156, 226, 275, 363, 432
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 70, 147, 239
BstF5I GGATG 2 cut(s) 42, 418
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 5 cut(s) 159, 229, 278, 366, 435
BstMAI GTCTC 4 cut(s) 62, 254, 282, 461
BstMBI GATC 5 cut(s) 156, 226, 275, 363, 432
BstMCI CGRYCG 2 cut(s) 135, 269
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 35, 137
BstV2I GAAGAC 3 cut(s) 69, 84, 180
BstZI CGGCCG 1 cut(s) 132
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 4 cut(s) 8, 72, 134, 214
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 42, 418
Cac8I GCNNGC 3 cut(s) 70, 147, 239
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 2 cut(s) 68, 233
Cfr13I GGNCC 1 cut(s) 482
CseI GACGC 3 cut(s) 44, 74, 187
CviAII CATG 1 cut(s) 220
CviJI RGCY 9 cut(s) 8, 26, 72, 113, 134, 214, 241, 251, 256
CviKI_1 RGCY 9 cut(s) 8, 26, 72, 113, 134, 214, 241, 251, 256
DpnI GATC 5 cut(s) 158, 228, 277, 365, 434
DpnII GATC 5 cut(s) 156, 226, 275, 363, 432
EaeI YGGCCR 2 cut(s) 132, 212
EagI CGGCCG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
EciI GGCGGA 3 cut(s) 300, 330, 492
EclXI CGGCCG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 482
Eco52I CGGCCG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 221, 504
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 1 cut(s) 219
FauI CCCGC 4 cut(s) 154, 265, 290, 415
Fnu4HI GCNGC 4 cut(s) 24, 126, 283, 337
FokI GGATG 2 cut(s) 29, 425
Fsp4HI GCNGC 4 cut(s) 24, 126, 283, 337
GlaI GCGC 1 cut(s) 85
GluI GCNGC 4 cut(s) 24, 126, 283, 337
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 4 cut(s) 8, 72, 134, 214
HapII CCGG 4 cut(s) 69, 215, 234, 257
HgaI GACGC 3 cut(s) 44, 74, 187
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 3 cut(s) 98, 182, 262
HpaII CCGG 4 cut(s) 69, 215, 234, 257
HphI GGTGA 3 cut(s) 373, 386, 464
Hpy188I TCNGA 3 cut(s) 169, 248, 437
Hpy188III TCNNGA 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 124, 337, 442
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 84
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 5 cut(s) 156, 226, 275, 363, 432
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 8 cut(s) 12, 82, 196, 223, 227, 228, 247, 270
Lsp1109I GCAGC 2 cut(s) 35, 137
MaeII ACGT 1 cut(s) 381
MalI GATC 5 cut(s) 158, 228, 277, 365, 434
MboI GATC 5 cut(s) 156, 226, 275, 363, 432
MboII GAAGA 8 cut(s) 74, 89, 185, 191, 203, 454, 457, 476
MluCI AATT 1 cut(s) 486
MlyI GAGTC 2 cut(s) 92, 256
MmeI TCCRAC 2 cut(s) 192, 226
MroNI GCCGGC 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 4 cut(s) 69, 215, 234, 257
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 70
NdeII GATC 5 cut(s) 156, 226, 275, 363, 432
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 250
NmeAIII GCCGAG 1 cut(s) 277
NspV TTCGAA 1 cut(s) 189
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 195, 275
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 265
PkrI GCNGC 4 cut(s) 25, 127, 284, 338
PleI GAGTC 2 cut(s) 92, 256
PpsI GAGTC 2 cut(s) 92, 256
Psp6I CCWGG 1 cut(s) 209
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 26
SatI GCNGC 4 cut(s) 24, 126, 283, 337
Sau3AI GATC 5 cut(s) 156, 226, 275, 363, 432
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 2 cut(s) 92, 256
ScrFI CCNGG 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 189
SgrAI CRCCGGYG 1 cut(s) 233
SinI GGWCC 1 cut(s) 482
Sse9I AATT 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 209
TaiI ACGT 1 cut(s) 384
TaqI TCGA 4 cut(s) 60, 75, 155, 189
TaqII GACCGA 1 cut(s) 255
TasI AATT 1 cut(s) 486
TauI GCSGC 2 cut(s) 285, 339
TfiI GAWTC 1 cut(s) 182
TseI GCWGC 2 cut(s) 23, 125
TspDTI ATGAA 2 cut(s) 17, 336
Tth111I GACNNNGTC 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.