FvH4_1g12841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011181
Physical Location & Seq
Forward (+)
7102921 .. 7103708
788 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12841.t1

Sequence Viewer

Length: 621 bp
ATGTGCGACAACCGCACCAGGTGGCTCATGCAACCGTCTAATCGTGCACCGACACGTGTCCACCTCACTTGCAGAAATCAGAAAAGAAAAGAAGACCAGAGCTGTTCTTATTCTCCGATCATACCAGGTCCTCTCCCTCTCACTCTCCCAGCCTTCCTCAAAGCCGCCACCGCCGTCAAGTCACGCTCCACCTCCATCTTCGCCGCCTCCGACGATGAAGACGACTGCGTCAACGATCCCTGGGAAGCGCGTCCCGACGCAGCGGTTGTCGTGGCCGAGACAAAGGCAGATCCGCCAGGAGGTTGCGGCGGAGATAATTGTGGAGCTGTGGTGGTCGGCGGAGATGCAGTGGTGGTGGCTAGCGAGGAGGAGATGAGGGATAAGATTGAAGACAAGAAGAAGAATGAGTCCTATGTTGGTTGGTGTATGAGTCGAGAATTCGGTAGAGGTGGACAAGAATCGCCACGTGTCGGTGCACGATTGGGTGGTCGCATGAGACACCTGGTACGGTTGTCGCAGAGAAAATTTTCTCTTAATAAGAACGAGACCTACGTCTATTTAAGCGATACAATGGCAACACTTGTATCAAGCACGTCTGCTGTCCGCTTCTTCATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.63

Weight (kDa)

8.47

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccII CGCG 1 cut(s) 250
AclWI GGATC 2 cut(s) 230, 284
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 437, 524
AcvI CACGTG 2 cut(s) 56, 467
AdeI CACNNNGTG 1 cut(s) 21
AfaI GTAC 1 cut(s) 507
AfiI CCNNNNNNNGG 2 cut(s) 299, 470
AflIII ACRYGT 3 cut(s) 53, 55, 466
AgsI TTSAA 1 cut(s) 389
AjiI CACGTC 1 cut(s) 594
AjnI CCWGG 5 cut(s) 17, 124, 239, 295, 501
AluBI AGCT 2 cut(s) 102, 326
AluI AGCT 2 cut(s) 102, 326
Alw21I GWGCWC 2 cut(s) 49, 478
Alw26I GTCTC 3 cut(s) 272, 490, 539
Alw44I GTGCAC 2 cut(s) 45, 474
AlwI GGATC 2 cut(s) 230, 284
AoxI GGCC 1 cut(s) 273
ApaLI GTGCAC 2 cut(s) 45, 474
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 437, 524
Asp700I GAANNNNTTC 1 cut(s) 526
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 128
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 2 cut(s) 49, 478
BaeI ACNNNNGTAYC 4 cut(s) 497, 530, 567, 600
BbrPI CACGTG 2 cut(s) 56, 467
BbsI GAAGAC 3 cut(s) 99, 225, 396
Bbv12I GWGCWC 2 cut(s) 49, 478
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 5 cut(s) 19, 126, 241, 297, 503
BcoDI GTCTC 3 cut(s) 272, 490, 539
BfaI CTAG 1 cut(s) 360
BisI GCNGC 4 cut(s) 165, 204, 261, 307
BlsI GCNGC 4 cut(s) 166, 205, 262, 308
Bme1390I CCNGG 5 cut(s) 19, 126, 241, 297, 503
Bme18I GGWCC 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 5 cut(s) 19, 126, 241, 297, 503
BmsI GCATC 1 cut(s) 334
BmtI GCTAGC 1 cut(s) 363
BoxI GACNNNNGTC 2 cut(s) 56, 551
BpiI GAAGAC 3 cut(s) 99, 225, 396
BsaAI YACGTR 2 cut(s) 56, 467
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 239, 240
BsaXI ACNNNNNCTCC 4 cut(s) 315, 333, 345, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 470
BseBI CCWGG 5 cut(s) 19, 126, 241, 297, 503
BseDI CCNNGG 2 cut(s) 239, 240
BseLI CCNNNNNNNGG 2 cut(s) 299, 470
BseRI GAGGAG 2 cut(s) 380, 383
BseSI GKGCMC 2 cut(s) 49, 478
BseXI GCAGC 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 49, 478
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 299, 470
BsmAI GTCTC 3 cut(s) 272, 490, 539
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 49, 478
Bsp143I GATC 3 cut(s) 117, 235, 289
BspANI GGCC 1 cut(s) 275
BspFNI CGCG 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 2 cut(s) 230, 284
BspTNI GGTCTC 1 cut(s) 539
BssECI CCNNGG 2 cut(s) 239, 240
BssMI GATC 3 cut(s) 117, 235, 289
Bst2UI CCWGG 5 cut(s) 19, 126, 241, 297, 503
Bst4CI ACNGT 2 cut(s) 36, 510
BstBAI YACGTR 2 cut(s) 56, 467
BstC8I GCNNGC 1 cut(s) 361
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 120, 238, 292
BstMAI GTCTC 3 cut(s) 272, 490, 539
BstMBI GATC 3 cut(s) 117, 235, 289
BstMWI GCNNNNNNNGC 2 cut(s) 12, 170
BstNI CCWGG 5 cut(s) 19, 126, 241, 297, 503
BstPAI GACNNNNGTC 2 cut(s) 56, 551
BstSCI CCNGG 5 cut(s) 17, 124, 239, 295, 501
BstSLI GKGCMC 2 cut(s) 49, 478
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 3 cut(s) 99, 225, 396
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 275
BtrI CACGTC 1 cut(s) 594
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 128
CseI GACGC 3 cut(s) 217, 239, 266
CsiI ACCWGGT 3 cut(s) 17, 124, 501
Csp6I GTAC 1 cut(s) 506
CspCI CAANNNNNGTGG 2 cut(s) 50, 85
CviAII CATG 2 cut(s) 28, 493
CviJI RGCY 7 cut(s) 25, 102, 152, 164, 275, 326, 359
CviKI_1 RGCY 7 cut(s) 25, 102, 152, 164, 275, 326, 359
CviQI GTAC 1 cut(s) 506
DpnI GATC 3 cut(s) 119, 237, 291
DpnII GATC 3 cut(s) 117, 235, 289
DraIII CACNNNGTG 1 cut(s) 21
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 273
EciI GGCGGA 3 cut(s) 282, 324, 354
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 128
Eco72I CACGTG 2 cut(s) 56, 467
EcoO109I RGGNCCY 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 5 cut(s) 17, 124, 239, 295, 501
FaeI CATG 2 cut(s) 31, 496
FaiI YATR 5 cut(s) 29, 122, 414, 428, 494
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 27, 492
Fnu4HI GCNGC 4 cut(s) 165, 204, 261, 307
Fsp4HI GCNGC 4 cut(s) 165, 204, 261, 307
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 249
GluI GCNGC 4 cut(s) 165, 204, 261, 307
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 275
HgaI GACGC 3 cut(s) 217, 239, 266
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 31, 496
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 407, 430, 458
Hpy166II GTNNAC 5 cut(s) 47, 61, 232, 452, 476
Hpy188I TCNGA 3 cut(s) 81, 117, 211
Hpy188III TCNNGA 2 cut(s) 254, 434
Hpy8I GTNNAC 5 cut(s) 47, 61, 232, 452, 476
Hpy99I CGWCG 2 cut(s) 215, 260
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 36, 510
HpyCH4IV ACGT 4 cut(s) 55, 466, 552, 593
HpyCH4V TGCA 5 cut(s) 31, 47, 72, 347, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 170
HpySE526I ACGT 4 cut(s) 55, 466, 552, 593
Hsp92II CATG 2 cut(s) 31, 496
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 117, 235, 289
LmnI GCTCC 2 cut(s) 191, 323
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 334
MabI ACCWGGT 3 cut(s) 17, 124, 501
MaeI CTAG 1 cut(s) 360
MaeII ACGT 4 cut(s) 55, 466, 552, 593
MaeIII GTNAC 1 cut(s) 180
MalI GATC 3 cut(s) 119, 237, 291
MboI GATC 3 cut(s) 117, 235, 289
MboII GAAGA 7 cut(s) 104, 190, 230, 401, 409, 412, 601
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 49, 478
MluCI AATT 3 cut(s) 316, 437, 524
MlyI GAGTC 2 cut(s) 416, 439
MmeI TCCRAC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 526
MseI TTAA 2 cut(s) 534, 560
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 5 cut(s) 19, 126, 241, 297, 503
MvaI CCWGG 5 cut(s) 19, 126, 241, 297, 503
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 12, 170
NdeII GATC 3 cut(s) 117, 235, 289
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 2 cut(s) 31, 496
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 180
PasI CCCWGGG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 219, 549
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 458
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 4 cut(s) 166, 205, 262, 308
PleI GAGTC 2 cut(s) 415, 438
PmaCI CACGTG 2 cut(s) 56, 467
PmlI CACGTG 2 cut(s) 56, 467
PpsI GAGTC 2 cut(s) 415, 438
Ppu21I YACGTR 2 cut(s) 56, 467
PpuMI RGGWCCY 1 cut(s) 128
PshAI GACNNNNGTC 2 cut(s) 56, 551
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 5 cut(s) 17, 124, 239, 295, 501
PspCI CACGTG 2 cut(s) 56, 467
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 5 cut(s) 17, 124, 239, 295, 501
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PsrI GAACNNNNNNTAC 2 cut(s) 533, 565
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
SaqAI TTAA 2 cut(s) 534, 560
SatI GCNGC 4 cut(s) 165, 204, 261, 307
Sau3AI GATC 3 cut(s) 117, 235, 289
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 2 cut(s) 416, 439
ScrFI CCNGG 5 cut(s) 19, 126, 241, 297, 503
SduI GDGCHC 2 cut(s) 49, 478
SexAI ACCWGGT 3 cut(s) 17, 124, 501
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 1 cut(s) 128
Sse9I AATT 3 cut(s) 316, 437, 524
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 5 cut(s) 17, 124, 239, 295, 501
TaaI ACNGT 2 cut(s) 36, 510
TaiI ACGT 4 cut(s) 58, 469, 555, 596
TaqI TCGA 1 cut(s) 433
TasI AATT 3 cut(s) 316, 437, 524
TauI GCSGC 3 cut(s) 167, 206, 309
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 534, 560
Tru9I TTAA 2 cut(s) 534, 560
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 231, 601
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 227
VneI GTGCAC 2 cut(s) 45, 474
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 2 cut(s) 437, 524
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.