Rh2BG406000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011181
Physical Location & Seq
Reverse (-)
57503798 .. 57505171
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG406000.1

Sequence Viewer

Length: 465 bp
ATGGAGGCCTCCGAGGAACAACAACCCGGAACACTAGTGCACCACATCCTCCCTCCCCGCCTCGAAGACGCCGGCCTCGAAGACTGCGCCCTCCCCCCCGATTCAATCAAGCAAGCCTTCCTCAAAGCCGCCGCCGCCGTCAAGTCACGCGCCACCTCCCTCTTCACCGACGACGACGAGGAAGAAGACTGCGTCAGAGATCCCTGGCCGGCGGCGGAGGGGCGTCCCGACGCGGTGGTCGGAGCCGAGACGGAGGGGATTGCTCCGGGAGCTTGCGGCGGAGATGGAGTGGTGGTGGGCCGTGAGGAGGAGAAGAGGGATAAGGTGGTTGTGGGAGGTGAAGATGTGAGGGAGGTTGGTGGAGATAAGGCTTGTGTTGATGGGTTGGTTGGGTTAGAGATTGAAGAGAAGAAGAATGAGGATAAGAGTGATGAGGGACCTATTTTGGTTGGAGGTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.16

Weight (kDa)

4.26

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccII CGCG 2 cut(s) 150, 233
AciI CCGC 9 cut(s) 58, 129, 132, 135, 212, 215, 233, 276, 279
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 206
AcyI GRCGYC 2 cut(s) 69, 223
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 105, 404
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 242
Alw44I GTGCAC 1 cut(s) 38
AlwI GGATC 1 cut(s) 194
AoxI GGCC 4 cut(s) 6, 73, 206, 298
ApaLI GTGCAC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 89, 152
AspS9I GGNCC 2 cut(s) 298, 437
AsuC2I CCSGG 2 cut(s) 27, 267
AsuHPI GGTGA 2 cut(s) 157, 350
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 42
BbsI GAAGAC 3 cut(s) 72, 87, 192
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 2 cut(s) 278, 374
BceAI ACGGC 2 cut(s) 122, 285
BciT130I CCWGG 1 cut(s) 205
BcnI CCSGG 2 cut(s) 27, 267
BcoDI GTCTC 1 cut(s) 242
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 1 cut(s) 35
BisI GCNGC 5 cut(s) 129, 132, 135, 213, 277
BlsI GCNGC 5 cut(s) 130, 133, 136, 214, 278
Bme1390I CCNGG 3 cut(s) 27, 205, 267
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 298, 437
BmiI GGNNCC 2 cut(s) 244, 438
BmrFI CCNGG 3 cut(s) 27, 205, 267
BpiI GAAGAC 3 cut(s) 72, 87, 192
BpuMI CCSGG 2 cut(s) 27, 267
BsaHI GRCGYC 2 cut(s) 69, 223
BsaJI CCNNGG 2 cut(s) 12, 203
BsaXI ACNNNNNCTCC 4 cut(s) 273, 279, 303, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 2 cut(s) 71, 208
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 12, 203
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 307
BseRI GAGGAG 2 cut(s) 320, 323
BseSI GKGCMC 1 cut(s) 42
Bsh1236I CGCG 2 cut(s) 150, 233
BshFI GGCC 4 cut(s) 8, 75, 208, 300
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 4 cut(s) 27, 72, 209, 266
BslFI GGGAC 2 cut(s) 210, 450
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 242
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 210, 450
BsnI GGCC 4 cut(s) 8, 75, 208, 300
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 9 cut(s) 58, 129, 132, 135, 212, 215, 233, 276, 279
BspANI GGCC 4 cut(s) 8, 75, 208, 300
BspFNI CGCG 2 cut(s) 150, 233
BspLI GGNNCC 2 cut(s) 244, 438
BspPI GGATC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 71, 208
BssAI RCCGGY 2 cut(s) 71, 208
BssECI CCNNGG 2 cut(s) 12, 203
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 2 cut(s) 69, 223
Bst2UI CCWGG 1 cut(s) 205
Bst6I CTCTTC 3 cut(s) 167, 308, 399
BstACI GRCGYC 2 cut(s) 69, 223
BstC8I GCNNGC 4 cut(s) 73, 114, 210, 274
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 2 cut(s) 150, 233
BstHHI GCGC 2 cut(s) 89, 152
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 134, 269
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 25, 203, 265
BstSLI GKGCMC 1 cut(s) 42
BstUI CGCG 2 cut(s) 150, 233
BstV2I GAAGAC 3 cut(s) 72, 87, 192
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 4 cut(s) 8, 75, 208, 300
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 4 cut(s) 73, 114, 210, 274
CfoI GCGC 2 cut(s) 89, 152
Cfr10I RCCGGY 2 cut(s) 71, 208
Cfr13I GGNCC 2 cut(s) 298, 437
CseI GACGC 4 cut(s) 77, 181, 212, 239
CviJI RGCY 9 cut(s) 8, 75, 116, 128, 208, 245, 272, 300, 371
CviKI_1 RGCY 9 cut(s) 8, 75, 116, 128, 208, 245, 272, 300, 371
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 206
Eam1104I CTCTTC 3 cut(s) 167, 308, 399
EarI CTCTTC 3 cut(s) 167, 308, 399
EciI GGCGGA 2 cut(s) 230, 294
Eco147I AGGCCT 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 242
FaiI YATR 1 cut(s) 459
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 210, 450
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 5 cut(s) 129, 132, 135, 213, 277
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 5 cut(s) 129, 132, 135, 213, 277
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 88, 151
GluI GCNGC 5 cut(s) 129, 132, 135, 213, 277
HaeIII GGCC 4 cut(s) 8, 75, 208, 300
HapII CCGG 4 cut(s) 27, 72, 209, 266
HgaI GACGC 4 cut(s) 77, 181, 212, 239
HhaI GCGC 2 cut(s) 89, 152
Hin1I GRCGYC 2 cut(s) 69, 223
Hin6I GCGC 2 cut(s) 87, 150
HinP1I GCGC 2 cut(s) 87, 150
HinfI GANTC 1 cut(s) 101
HpaII CCGG 4 cut(s) 27, 72, 209, 266
HphI GGTGA 2 cut(s) 157, 350
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 13, 197, 242
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 4 cut(s) 173, 176, 179, 233
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 269
Hsp92I GRCGYC 2 cut(s) 69, 223
HspAI GCGC 2 cut(s) 87, 150
KroI GCCGGC 2 cut(s) 71, 208
KroNI GCCGGC 2 cut(s) 73, 210
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 3 cut(s) 242, 268, 269
LpnPI CCDG 6 cut(s) 40, 85, 190, 217, 222, 279
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 42
MmeI TCCRAC 2 cut(s) 220, 430
MroNI GCCGGC 2 cut(s) 71, 208
MseI TTAA 1 cut(s) 463
MspI CCGG 4 cut(s) 27, 72, 209, 266
MspR9I CCNGG 3 cut(s) 27, 205, 267
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 2 cut(s) 150, 233
MwoI GCNNNNNNNGC 2 cut(s) 134, 269
NaeI GCCGGC 2 cut(s) 73, 210
NciI CCSGG 2 cut(s) 27, 267
NdeII GATC 1 cut(s) 199
NgoMIV GCCGGC 2 cut(s) 71, 208
NlaIV GGNNCC 2 cut(s) 244, 438
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 144
PceI AGGCCT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdiI GCCGGC 2 cut(s) 73, 210
PfeI GAWTC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 191
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 5 cut(s) 130, 133, 136, 214, 278
PpuMI RGGWCCY 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 244, 438
PspPI GGNCC 2 cut(s) 298, 437
PspPPI RGGWCCY 1 cut(s) 437
PsuI RGATCY 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 463
SatI GCNGC 5 cut(s) 129, 132, 135, 213, 277
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 2 cut(s) 298, 437
ScrFI CCNGG 3 cut(s) 27, 205, 267
SduI GDGCHC 1 cut(s) 42
SetI ASST 7 cut(s) 158, 274, 327, 340, 357, 442, 457
SinI GGWCC 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 34
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 9 cut(s) 58, 129, 132, 135, 212, 215, 233, 276, 279
SspMI CTAG 1 cut(s) 35
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 25, 203, 265
TaqI TCGA 2 cut(s) 63, 78
TauI GCSGC 5 cut(s) 131, 134, 137, 215, 279
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 266
Tth111I GACNNNGTC 1 cut(s) 191
VneI GTGCAC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 437
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.