Rh2DG421700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011181
Physical Location & Seq
Forward (+)
61175311 .. 61175778
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG421700.1

Sequence Viewer

Length: 468 bp
ATGGAGGCCTCCGAGGAACAACAACCCGGAACACTAGTGCACCACATCCTCCCTCCCCGCCTCGAAGACGCCGGCCTCGAAGACTGCGCCCTCCCCCCCGATTCAATCAAGCAAGCCTTCCTCAAAGCCGCCGCCGCCGTCAAGTCACGCGCCACCTCCCTCTTCACCGACGACGACGACGAGGAAGAAGACTGCGTCAGAGATCCCTGGCCGGCGGCGGTGGGGCGTCCCGACGCGGTGGTCGGAGCCGTGCCGGAGGGGAATCCTCCGGGAGCTTGCGGCGGAGATGAAGTGGCTGTGGGCGGTGAGGAGGAGAAGAGGGATAAGGTGGTTGTGGGAGGTGAAGATGTGAGGGAGGTTGGTGGAGATAAGGCTTGTGTTGATGGGTTGGTTGGGTTAGAGATTGAAGAGAAGAAGAATGAGGATAAGAATGATGAGGGACCTATTTTGGTTGGAGGTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.21

Weight (kDa)

4.2

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccII CGCG 2 cut(s) 150, 236
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 209
AcyI GRCGYC 2 cut(s) 69, 226
AgsI TTSAA 2 cut(s) 105, 407
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 42
Alw44I GTGCAC 1 cut(s) 38
AlwI GGATC 1 cut(s) 197
AoxI GGCC 3 cut(s) 6, 73, 209
ApaLI GTGCAC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 89, 152
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 2 cut(s) 27, 270
AsuHPI GGTGA 3 cut(s) 157, 317, 353
AvaII GGWCC 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 42
BbsI GAAGAC 3 cut(s) 72, 87, 195
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 1 cut(s) 377
BceAI ACGGC 2 cut(s) 122, 233
BciT130I CCWGG 1 cut(s) 208
BcnI CCSGG 2 cut(s) 27, 270
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 1 cut(s) 35
BisI GCNGC 5 cut(s) 129, 132, 135, 216, 280
BlsI GCNGC 5 cut(s) 130, 133, 136, 217, 281
Bme1390I CCNGG 3 cut(s) 27, 208, 270
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 247, 441
BmrFI CCNGG 3 cut(s) 27, 208, 270
BpiI GAAGAC 3 cut(s) 72, 87, 195
BpuMI CCSGG 2 cut(s) 27, 270
BsaHI GRCGYC 2 cut(s) 69, 226
BsaJI CCNNGG 2 cut(s) 12, 206
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bse118I RCCGGY 2 cut(s) 71, 211
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 12, 206
BseGI GGATG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 323, 326
BseSI GKGCMC 1 cut(s) 42
Bsh1236I CGCG 2 cut(s) 150, 236
BshFI GGCC 3 cut(s) 8, 75, 211
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 5 cut(s) 27, 72, 212, 254, 269
BslFI GGGAC 2 cut(s) 213, 453
BsmFI GGGAC 2 cut(s) 213, 453
BsnI GGCC 3 cut(s) 8, 75, 211
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 3 cut(s) 8, 75, 211
BspFNI CGCG 2 cut(s) 150, 236
BspLI GGNNCC 2 cut(s) 247, 441
BspPI GGATC 1 cut(s) 197
BsrFI RCCGGY 2 cut(s) 71, 211
BssAI RCCGGY 2 cut(s) 71, 211
BssECI CCNNGG 2 cut(s) 12, 206
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 2 cut(s) 69, 226
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 3 cut(s) 167, 311, 402
BstACI GRCGYC 2 cut(s) 69, 226
BstC8I GCNNGC 4 cut(s) 73, 114, 213, 277
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 2 cut(s) 150, 236
BstHHI GCGC 2 cut(s) 89, 152
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 25, 206, 268
BstSLI GKGCMC 1 cut(s) 42
BstUI CGCG 2 cut(s) 150, 236
BstV2I GAAGAC 3 cut(s) 72, 87, 195
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 3 cut(s) 8, 75, 211
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 4 cut(s) 73, 114, 213, 277
CfoI GCGC 2 cut(s) 89, 152
Cfr10I RCCGGY 2 cut(s) 71, 211
Cfr13I GGNCC 1 cut(s) 440
CseI GACGC 4 cut(s) 77, 184, 215, 242
CviJI RGCY 9 cut(s) 8, 75, 116, 128, 211, 248, 275, 296, 374
CviKI_1 RGCY 9 cut(s) 8, 75, 116, 128, 211, 248, 275, 296, 374
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 3 cut(s) 167, 311, 402
EarI CTCTTC 3 cut(s) 167, 311, 402
EciI GGCGGA 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 206
FaiI YATR 1 cut(s) 462
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 213, 453
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 5 cut(s) 129, 132, 135, 216, 280
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 5 cut(s) 129, 132, 135, 216, 280
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 88, 151
GluI GCNGC 5 cut(s) 129, 132, 135, 216, 280
HaeIII GGCC 3 cut(s) 8, 75, 211
HapII CCGG 5 cut(s) 27, 72, 212, 254, 269
HgaI GACGC 4 cut(s) 77, 184, 215, 242
HhaI GCGC 2 cut(s) 89, 152
Hin1I GRCGYC 2 cut(s) 69, 226
Hin6I GCGC 2 cut(s) 87, 150
HinP1I GCGC 2 cut(s) 87, 150
HinfI GANTC 2 cut(s) 101, 262
HpaII CCGG 5 cut(s) 27, 72, 212, 254, 269
HphI GGTGA 3 cut(s) 157, 317, 353
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 13, 200, 245
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 5 cut(s) 173, 176, 179, 182, 236
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92I GRCGYC 2 cut(s) 69, 226
HspAI GCGC 2 cut(s) 87, 150
KroI GCCGGC 2 cut(s) 71, 211
KroNI GCCGGC 2 cut(s) 73, 213
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 2 cut(s) 245, 272
LpnPI CCDG 7 cut(s) 40, 85, 193, 220, 225, 267, 282
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 42
MmeI TCCRAC 2 cut(s) 223, 433
MroNI GCCGGC 2 cut(s) 71, 211
MseI TTAA 1 cut(s) 466
MspI CCGG 5 cut(s) 27, 72, 212, 254, 269
MspR9I CCNGG 3 cut(s) 27, 208, 270
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 2 cut(s) 150, 236
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 2 cut(s) 73, 213
NciI CCSGG 2 cut(s) 27, 270
NdeII GATC 1 cut(s) 202
NgoMIV GCCGGC 2 cut(s) 71, 211
NlaIV GGNNCC 2 cut(s) 247, 441
NmuCI GTSAC 1 cut(s) 144
PceI AGGCCT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 177
PdiI GCCGGC 2 cut(s) 73, 213
PfeI GAWTC 2 cut(s) 101, 262
PflFI GACNNNGTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 5 cut(s) 130, 133, 136, 217, 281
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 247, 441
PspPI GGNCC 1 cut(s) 440
PspPPI RGGWCCY 1 cut(s) 440
PsuI RGATCY 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 5 cut(s) 129, 132, 135, 216, 280
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 27, 208, 270
SduI GDGCHC 1 cut(s) 42
SetI ASST 7 cut(s) 158, 277, 330, 343, 360, 445, 460
SinI GGWCC 1 cut(s) 440
SpeI ACTAGT 1 cut(s) 34
SseBI AGGCCT 1 cut(s) 8
SspMI CTAG 1 cut(s) 35
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 25, 206, 268
TaqI TCGA 2 cut(s) 63, 78
TauI GCSGC 5 cut(s) 131, 134, 137, 218, 282
TfiI GAWTC 2 cut(s) 101, 262
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 303
Tth111I GACNNNGTC 1 cut(s) 194
VneI GTGCAC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 440
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.