FvH4_7g17200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011181
Physical Location & Seq
Reverse (-)
14671023 .. 14671758
736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17200.t1

Sequence Viewer

Length: 441 bp
ATGGATAGAGAGGCCAAGAGAGACGTGGAGAGGCCGGAGGAGAGAGAGGCGGAGCTTGGGGCTGGATTGAGGTGGAGGATGGGATGGGAGAGCCGGAGAGGACTTGGGTTTGGTTTTGGCCTGATCGGAGCCGGTCTTCTCCCTCTCCCTCTCCCAGCCTTCCTCAAAGCTACCACCGCTGTTAGTCACGCGCCACCTCCATCTTTGCCGCCTCCGATGAAGACAACTAGTCGGCGAAGTCACTGCGTCAACGATCCCTGGGAAGCCCATCCCGACACGGTGGTTGGGGCTAAGACAGAGTCGGATCCGTCGGGAGGTTGCGGTAGAAAGAAGGGTGGAGCTGTGGTGGTCGGCGGAGACAAAGTGGTGGTGGGTGGCGAGGAGGAGATGAGGGATAAGGTGATTGTGGGAGGCGAAGATATGAGAGGTCGATGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.72

Weight (kDa)

8.68

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 5 cut(s) 50, 177, 209, 321, 354
AclWI GGATC 3 cut(s) 248, 299, 312
AfiI CCNNNNNNNGG 1 cut(s) 314
AhdI GACNNNNNGTC 1 cut(s) 228
AhlI ACTAGT 1 cut(s) 227
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 3 cut(s) 55, 170, 341
AluI AGCT 3 cut(s) 55, 170, 341
Alw26I GTCTC 2 cut(s) 15, 351
AlwI GGATC 3 cut(s) 248, 299, 312
AoxI GGCC 3 cut(s) 12, 32, 118
AspLEI GCGC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 412
BamHI GGATCC 1 cut(s) 304
BbsI GAAGAC 2 cut(s) 128, 227
BccI CCATC 5 cut(s) 73, 78, 208, 276, 426
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 15, 351
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 259
BmeRI GACNNNNNGTC 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 130, 306
BmrFI CCNGG 1 cut(s) 259
BpiI GAAGAC 2 cut(s) 128, 227
BsaJI CCNNGG 2 cut(s) 257, 258
BsaXI ACNNNNNCTCC 4 cut(s) 330, 348, 360, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 257, 258
BseGI GGATG 3 cut(s) 84, 89, 268
BseLI CCNNNNNNNGG 1 cut(s) 314
BseRI GAGGAG 3 cut(s) 53, 395, 398
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 14, 34, 120
BsiSI CCGG 3 cut(s) 35, 94, 132
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 15, 351
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 3 cut(s) 14, 34, 120
Bsp143I GATC 3 cut(s) 123, 253, 304
BspACI CCGC 5 cut(s) 50, 177, 209, 321, 354
BspANI GGCC 3 cut(s) 14, 34, 120
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 130, 306
BspPI GGATC 3 cut(s) 248, 299, 312
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 257, 258
BssMI GATC 3 cut(s) 123, 253, 304
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 84, 89, 268
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 3 cut(s) 126, 256, 307
BstMAI GTCTC 2 cut(s) 15, 351
BstMBI GATC 3 cut(s) 123, 253, 304
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 257
BstUI CGCG 1 cut(s) 191
BstV2I GAAGAC 2 cut(s) 128, 227
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 3 cut(s) 14, 34, 120
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 3 cut(s) 84, 89, 268
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 131
CseI GACGC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 291
DpnI GATC 3 cut(s) 125, 255, 306
DpnII GATC 3 cut(s) 123, 253, 304
DriI GACNNNNNGTC 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 228
EciI GGCGGA 2 cut(s) 65, 369
EcoRII CCWGG 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 15
FaiI YATR 1 cut(s) 422
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 3 cut(s) 91, 96, 255
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 3 cut(s) 14, 34, 120
HapII CCGG 3 cut(s) 35, 94, 132
HgaI GACGC 1 cut(s) 235
HhaI GCGC 1 cut(s) 193
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 299
HpaII CCGG 3 cut(s) 35, 94, 132
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 128, 216, 304
Hpy188III TCNNGA 2 cut(s) 272, 312
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 169, 325
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 24
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 3 cut(s) 123, 253, 304
LmnI GCTCC 3 cut(s) 52, 128, 338
LpnPI CCDG 8 cut(s) 48, 48, 107, 134, 145, 168, 244, 271
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 185, 239
MalI GATC 3 cut(s) 125, 255, 306
MboI GATC 3 cut(s) 123, 253, 304
MboII GAAGA 3 cut(s) 128, 232, 428
MflI RGATCY 1 cut(s) 304
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 3 cut(s) 35, 94, 132
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 3 cut(s) 123, 253, 304
NlaIV GGNNCC 2 cut(s) 130, 306
NmuCI GTSAC 2 cut(s) 185, 239
PasI CCCWGGG 1 cut(s) 258
PflFI GACNNNGTC 1 cut(s) 298
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 130, 306
PsuI RGATCY 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 298
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 3 cut(s) 123, 253, 304
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 259
SetI ASST 9 cut(s) 27, 57, 74, 172, 199, 319, 343, 402, 430
SpeI ACTAGT 1 cut(s) 227
SsiI CCGC 5 cut(s) 50, 177, 209, 321, 354
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 430
TauI GCSGC 1 cut(s) 211
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 2 cut(s) 185, 239
Tsp45I GTSAC 2 cut(s) 185, 239
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.