FvH4_5g24053

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011181
Physical Location & Seq
Forward (+)
15336986 .. 15337865
880 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24053.t1

Sequence Viewer

Length: 330 bp
ATGAGCTCCTGTTGTTGCTCAGACTTGATCAAACCAGGTTCTCTCCCTCTCCTAGCCTTCCTCAAAGCCGCCACCGCTGTCAAGTCACGCGCCACCTCATCTTCGCCGCCTCTGATGAAGACGATTGGTCGGCGAAGTCACTGCGTCAACAATAGCTGGGAAACCCATCTAGACACAGTGGTCGGGGCCGAGATAGAACCGGATCCGCCGGGAGGTTGCGGCAGAAAGAATGGTGCAGTTGTGGTGGTCGGCGGAGATAAAGTGGTGGTGGGCAGCAAGGAGGAGATGAGGGATAAGGTGATTGTGGGAGGCGAAGGTCAGTGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.42

Weight (kDa)

8.69

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccII CGCG 1 cut(s) 90
AciI CCGC 6 cut(s) 69, 75, 107, 206, 219, 252
AclWI GGATC 2 cut(s) 197, 210
AfiI CCNNNNNNNGG 1 cut(s) 212
AhdI GACNNNNNGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 6, 156
AluI AGCT 2 cut(s) 6, 156
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 2 cut(s) 197, 210
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 310
BamHI GGATCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 174
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 36
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 1 cut(s) 210
BfaI CTAG 2 cut(s) 53, 170
BisI GCNGC 4 cut(s) 69, 107, 220, 274
BlsI GCNGC 4 cut(s) 70, 108, 221, 275
Bme1390I CCNGG 2 cut(s) 36, 210
BmeRI GACNNNNNGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 187, 204
BmrFI CCNGG 2 cut(s) 36, 210
BpiI GAAGAC 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 200, 209
BslI CCNNNNNNNGG 1 cut(s) 212
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 27, 202
BspACI CCGC 6 cut(s) 69, 75, 107, 206, 219, 252
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 187, 204
BspPI GGATC 2 cut(s) 197, 210
BssMI GATC 2 cut(s) 27, 202
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 30, 205
BstMBI GATC 2 cut(s) 27, 202
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 34, 208
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 3 cut(s) 139, 183, 326
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 34
CviJI RGCY 5 cut(s) 6, 56, 68, 156, 188
CviKI_1 RGCY 5 cut(s) 6, 56, 68, 156, 188
DdeI CTNAG 1 cut(s) 19
DpnI GATC 2 cut(s) 29, 204
DpnII GATC 2 cut(s) 27, 202
DrdI GACNNNNNNGTC 1 cut(s) 179
DriI GACNNNNNGTC 1 cut(s) 126
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1105I GACNNNNNGTC 1 cut(s) 126
EciI GGCGGA 2 cut(s) 195, 267
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 8
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 69, 107, 220, 274
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 69, 107, 220, 274
FspBI CTAG 2 cut(s) 53, 170
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 69, 107, 220, 274
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 188
HapII CCGG 2 cut(s) 200, 209
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 92
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HpaII CCGG 2 cut(s) 200, 209
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 22, 114
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 67, 308
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 19
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 2 cut(s) 27, 202
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 21, 22, 48, 142, 213, 222
Lsp1109I GCAGC 1 cut(s) 285
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 2 cut(s) 53, 170
MaeIII GTNAC 2 cut(s) 84, 137
MalI GATC 2 cut(s) 29, 204
MboI GATC 2 cut(s) 27, 202
MboII GAAGA 2 cut(s) 93, 130
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 8
MnlI CCTC 8 cut(s) 57, 71, 106, 120, 206, 274, 282, 302
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 200, 209
MspR9I CCNGG 2 cut(s) 36, 210
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 1 cut(s) 210
NdeII GATC 2 cut(s) 27, 202
NlaIV GGNNCC 2 cut(s) 187, 204
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 84, 137
PkrI GCNGC 4 cut(s) 70, 108, 221, 275
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 187, 204
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 202
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 4 cut(s) 69, 107, 220, 274
Sau3AI GATC 2 cut(s) 27, 202
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 36, 210
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 8, 40, 98, 158, 217, 300, 319
SexAI ACCWGGT 1 cut(s) 34
SsiI CCGC 6 cut(s) 69, 75, 107, 206, 219, 252
SspMI CTAG 2 cut(s) 53, 170
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 34, 208
TaaI ACNGT 1 cut(s) 178
TauI GCSGC 3 cut(s) 71, 109, 222
TscAI CASTG 3 cut(s) 146, 183, 326
TseFI GTSAC 2 cut(s) 84, 137
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 2 cut(s) 84, 137
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 3 cut(s) 146, 183, 326
XbaI TCTAGA 1 cut(s) 169
XspI CTAG 2 cut(s) 53, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.