FvH4_6g40281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011181
Physical Location & Seq
Reverse (-)
31793901 .. 31794391
491 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40281.t1

Sequence Viewer

Length: 300 bp
ATGAGCATAATTAAAGACGGTGTTTTTCTGAGTTTCAAATCTCACCTGGGCTCCAGCCTAGTCAAGACTAGGCTGGCTCCGCCAGTGAGTCCTCTCCCTCTACCTCTCCCAGCCTTCCTCAAAGCCGTCACCTCCATTTTCGTCACCTCTGATGACGAAGACGACTGCGTCAAAGACTTCTTGACGCGTCGGGGCCGAGACGGAGACGGATCCGTCGGGAGGTTGCGGCGTAGAAAGGGTGGAGCTGTGATGGTTGGCGGAGATAGTGATGGTGGCCGGCGAGGAGGAGATGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.47

Weight (kDa)

9.42

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 167, 212
AccII CGCG 1 cut(s) 187
AciI CCGC 3 cut(s) 80, 226, 258
AclWI GGATC 2 cut(s) 204, 217
AcoI YGGCCR 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 192, 198
AlwI GGATC 2 cut(s) 204, 217
AoxI GGCC 2 cut(s) 193, 274
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 3 cut(s) 35, 121, 136
BamHI GGATCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 165
BccI CCATC 2 cut(s) 244, 263
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 192, 198
BfaI CTAG 2 cut(s) 59, 69
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 4 cut(s) 52, 78, 194, 211
BmrFI CCNGG 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 297, 300
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 195, 276
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 192, 198
BsmBI CGTCTC 2 cut(s) 192, 198
BsnI GGCC 2 cut(s) 195, 276
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 3 cut(s) 80, 226, 258
BspANI GGCC 2 cut(s) 195, 276
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 4 cut(s) 52, 78, 194, 211
BspPI GGATC 2 cut(s) 204, 217
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 75, 278
BstDEI CTNAG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 2 cut(s) 192, 198
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstUI CGCG 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 2 cut(s) 195, 276
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 75, 278
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 3 cut(s) 157, 176, 193
CviJI RGCY 9 cut(s) 51, 57, 73, 77, 113, 125, 195, 245, 276
CviKI_1 RGCY 9 cut(s) 51, 57, 73, 77, 113, 125, 195, 245, 276
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
DrdI GACNNNNNNGTC 2 cut(s) 167, 212
DseDI GACNNNNNNGTC 2 cut(s) 167, 212
EaeI YGGCCR 1 cut(s) 274
EciI GGCGGA 2 cut(s) 69, 273
Eco24I GRGCYC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 53
Esp3I CGTCTC 2 cut(s) 192, 198
FaiI YATR 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 2 cut(s) 59, 69
GluI GCNGC 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 2 cut(s) 195, 276
HapII CCGG 1 cut(s) 277
HgaI GACGC 3 cut(s) 157, 176, 193
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 277
HphI GGTGA 3 cut(s) 35, 121, 136
Hpy188I TCNGA 2 cut(s) 30, 151
Hpy188III TCNNGA 3 cut(s) 64, 181, 217
Hpy99I CGWCG 2 cut(s) 192, 218
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 29
KroI GCCGGC 1 cut(s) 276
KroNI GCCGGC 1 cut(s) 278
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 3 cut(s) 56, 82, 242
LpnPI CCDG 7 cut(s) 32, 59, 59, 67, 96, 123, 290
MaeI CTAG 2 cut(s) 59, 69
MaeIII GTNAC 2 cut(s) 127, 142
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 9
MluI ACGCGT 1 cut(s) 185
MlyI GAGTC 1 cut(s) 97
MroNI GCCGGC 1 cut(s) 276
MseI TTAA 1 cut(s) 12
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 79
NaeI GCCGGC 1 cut(s) 278
NdeII GATC 1 cut(s) 209
NgoMIV GCCGGC 1 cut(s) 276
NlaIV GGNNCC 4 cut(s) 52, 78, 194, 211
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 2 cut(s) 127, 142
PdiI GCCGGC 1 cut(s) 278
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 4 cut(s) 52, 78, 194, 211
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 209
PsyI GACNNNGTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 53
SetI ASST 6 cut(s) 48, 106, 134, 149, 224, 247
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 80, 226, 258
SspMI CTAG 2 cut(s) 59, 69
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 20
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 2 cut(s) 127, 142
Tsp45I GTSAC 2 cut(s) 127, 142
TspGWI ACGGA 3 cut(s) 202, 216, 222
TspRI CASTG 1 cut(s) 90
Tth111I GACNNNGTC 1 cut(s) 167
XspI CTAG 2 cut(s) 59, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.