RLG00000019752

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011181
Physical Location & Seq
Forward (+)
56307436 .. 56307933
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019752

Sequence Viewer

Length: 498 bp
ATGGAGGCCACCGAGGAACAACAACCCGGAACACTGCTGCACCACATCCTCCCTCCCCGCCTCGAAGACGCCGGCCTCGAAGACTGCGCCCTCCCCCCCGATTCAATCAAGCAAGCCTTCCTCAAAGCCGCCACCGCCGTCAAGTCACGCGCCACCTCCCTCTTCACCGACGACGACGACGAAGAAGAAGAAGAAGAAGACTGCGTCAGAGATCCCTGGCCGGCGGCGGAGGGCCGTCCCGACAAAGTGGTCGGAGCAGATGCGGAGGGGAATCCTCCGGGTGCTTGCGGCGGAGCTGTGGAGGTCGGCGGAGATGAAGTGGTGGTGGGCGGTGAGGAGGAGAAGAGGGATAAGGTGGTTGTGGGAGGTGAAGATGTGAGAGAGGTTGGTGGAGATAAGGCTTGTGTTGATGGTTTGGTTGGGTTAGAGATTGGAGAGAAGAAGAAGAAGAAGAAGAATAATGATGAGGGACCTATTTTGGTTGGAGGTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.35

Weight (kDa)

4.33

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccII CGCG 1 cut(s) 150
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 69
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AlwI GGATC 1 cut(s) 206
AoxI GGCC 4 cut(s) 6, 73, 218, 232
ApeKI GCWGC 1 cut(s) 37
AspLEI GCGC 2 cut(s) 89, 152
AspS9I GGNCC 2 cut(s) 232, 470
AsuC2I CCSGG 2 cut(s) 27, 279
AsuHPI GGTGA 3 cut(s) 157, 344, 380
AvaII GGWCC 1 cut(s) 470
BbsI GAAGAC 3 cut(s) 72, 87, 204
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 404
BceAI ACGGC 2 cut(s) 122, 219
BciT130I CCWGG 1 cut(s) 217
BcnI CCSGG 2 cut(s) 27, 279
BisI GCNGC 4 cut(s) 38, 129, 225, 289
BlsI GCNGC 4 cut(s) 39, 130, 226, 290
Bme1390I CCNGG 3 cut(s) 27, 217, 279
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 232, 470
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 3 cut(s) 27, 217, 279
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 3 cut(s) 72, 87, 204
BpuMI CCSGG 2 cut(s) 27, 279
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 12, 215
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bse118I RCCGGY 2 cut(s) 71, 220
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 12, 215
BseGI GGATG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 350, 353
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 4 cut(s) 8, 75, 220, 234
BsiSI CCGG 4 cut(s) 27, 72, 221, 278
BslFI GGGAC 2 cut(s) 222, 483
BsmFI GGGAC 2 cut(s) 222, 483
BsnI GGCC 4 cut(s) 8, 75, 220, 234
Bsp143I GATC 1 cut(s) 211
BspANI GGCC 4 cut(s) 8, 75, 220, 234
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 471
BspPI GGATC 1 cut(s) 206
BsrFI RCCGGY 2 cut(s) 71, 220
BssAI RCCGGY 2 cut(s) 71, 220
BssECI CCNNGG 2 cut(s) 12, 215
BssMI GATC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 167, 338
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 73, 114, 222, 286
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 2 cut(s) 89, 152
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 25, 215, 277
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 3 cut(s) 72, 87, 204
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 4 cut(s) 8, 75, 220, 234
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 4 cut(s) 73, 114, 222, 286
CfoI GCGC 2 cut(s) 89, 152
Cfr10I RCCGGY 2 cut(s) 71, 220
Cfr13I GGNCC 2 cut(s) 232, 470
CseI GACGC 2 cut(s) 77, 193
CviJI RGCY 8 cut(s) 8, 75, 116, 128, 220, 234, 296, 401
CviKI_1 RGCY 8 cut(s) 8, 75, 116, 128, 220, 234, 296, 401
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 167, 338
EarI CTCTTC 2 cut(s) 167, 338
EciI GGCGGA 3 cut(s) 242, 306, 324
Eco47I GGWCC 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 215
FaiI YATR 1 cut(s) 492
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 222, 483
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 4 cut(s) 38, 129, 225, 289
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 38, 129, 225, 289
GlaI GCGC 2 cut(s) 88, 151
GluI GCNGC 4 cut(s) 38, 129, 225, 289
HaeIII GGCC 4 cut(s) 8, 75, 220, 234
HapII CCGG 4 cut(s) 27, 72, 221, 278
HgaI GACGC 2 cut(s) 77, 193
HhaI GCGC 2 cut(s) 89, 152
Hin1I GRCGYC 1 cut(s) 69
Hin6I GCGC 2 cut(s) 87, 150
HinP1I GCGC 2 cut(s) 87, 150
HinfI GANTC 2 cut(s) 101, 271
HpaII CCGG 4 cut(s) 27, 72, 221, 278
HphI GGTGA 3 cut(s) 157, 344, 380
Hpy188I TCNGA 2 cut(s) 209, 254
Hpy188III TCNNGA 1 cut(s) 239
Hpy99I CGWCG 4 cut(s) 173, 176, 179, 182
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 69
HspAI GCGC 2 cut(s) 87, 150
KroI GCCGGC 2 cut(s) 71, 220
KroNI GCCGGC 2 cut(s) 73, 222
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 254, 293
LpnPI CCDG 6 cut(s) 40, 85, 202, 229, 234, 291
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MflI RGATCY 1 cut(s) 211
MmeI TCCRAC 2 cut(s) 232, 463
MroNI GCCGGC 2 cut(s) 71, 220
MseI TTAA 1 cut(s) 496
MspI CCGG 4 cut(s) 27, 72, 221, 278
MspR9I CCNGG 3 cut(s) 27, 217, 279
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 2 cut(s) 73, 222
NciI CCSGG 2 cut(s) 27, 279
NdeII GATC 1 cut(s) 211
NgoMIV GCCGGC 2 cut(s) 71, 220
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 177
PdiI GCCGGC 2 cut(s) 73, 222
PfeI GAWTC 2 cut(s) 101, 271
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 4 cut(s) 39, 130, 226, 290
PpuMI RGGWCCY 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 232, 470
PspPPI RGGWCCY 1 cut(s) 470
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 4 cut(s) 38, 129, 225, 289
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 232, 470
ScrFI CCNGG 3 cut(s) 27, 217, 279
SetI ASST 8 cut(s) 158, 298, 306, 357, 370, 387, 475, 490
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 470
StyD4I CCNGG 3 cut(s) 25, 215, 277
TaqI TCGA 2 cut(s) 63, 78
TauI GCSGC 3 cut(s) 131, 227, 291
TfiI GAWTC 2 cut(s) 101, 271
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.