Prupe.3G068600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011181
Physical Location & Seq
Reverse (-)
4936004 .. 4936725
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G068600.1

Sequence Viewer

Length: 507 bp
ATGGAGGCCACCAAGGAACAAGGAGCTGGCTTACTGCACCACATCCTCCCTCCGCGCCTCGAAGACGCTGGCCTCGAAGACTGCGCGCTCCCAGCGGACTCCATCAAAGAAGCCTTCCTCAAAGCCGCAACGGCCGTTAAGTCACGATCCACCTCGATCTTCACCGCCGACGAAGACGAAGAAGCTTTTGAGGATTGTATCAGTGACCCATGGCCTGACCTAAAGGTTCCCGCTGACGAGGTGATCGGAGCTGGGCCTGAGACGCGGTCGCCGGCACCGTGTGGCGGCGATAAGGGTCGGTCGGTGGAGGTCGGTGGAGATGAAGTGGTGGTGGGTGGTGAGGAGGTGAAAGGGGATAAGGTGATTGTGGGAGGTGAAGATGTGAGAGAGGGTGGTGATAGGGCTTGTGTGGATGGGTTGGCTGGGTTGGAAATTGGAGGGAAGAAGAACAGTAAGGTGAGGAATGGTGATGGTGAAGGACCAATTTTGGTTGGAGGTTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.31

Weight (kDa)

4.4

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AccII CGCG 3 cut(s) 55, 86, 265
AciI CCGC 7 cut(s) 53, 95, 126, 165, 231, 265, 285
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 132
AdeI CACNNNGTG 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 26, 185, 251
AluI AGCT 3 cut(s) 26, 185, 251
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 141
AoxI GGCC 5 cut(s) 6, 70, 132, 212, 254
AspLEI GCGC 3 cut(s) 57, 86, 88
AspS9I GGNCC 2 cut(s) 254, 479
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 274
BbsI GAAGAC 3 cut(s) 69, 84, 180
BccI CCATC 3 cut(s) 110, 407, 464
BceAI ACGGC 2 cut(s) 119, 147
BcoDI GTCTC 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 2 cut(s) 126, 286
BlsI GCNGC 2 cut(s) 127, 287
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 254, 479
BmiI GGNNCC 2 cut(s) 228, 276
BpiI GAAGAC 3 cut(s) 69, 84, 180
BsaJI CCNNGG 2 cut(s) 12, 209
BsaXI ACNNNNNCTCC 3 cut(s) 309, 339, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse118I RCCGGY 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 12, 209
BseGI GGATG 2 cut(s) 42, 418
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 249
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 356
BseX3I CGGCCG 1 cut(s) 132
BseYI CCCAGC 3 cut(s) 91, 251, 422
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 3 cut(s) 55, 86, 265
Bsh1285I CGRYCG 3 cut(s) 135, 269, 302
BshFI GGCC 5 cut(s) 8, 72, 134, 214, 256
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 3 cut(s) 135, 269, 302
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsnI GGCC 5 cut(s) 8, 72, 134, 214, 256
Bsp143I GATC 3 cut(s) 146, 156, 243
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 7 cut(s) 53, 95, 126, 165, 231, 265, 285
BspANI GGCC 5 cut(s) 8, 72, 134, 214, 256
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 3 cut(s) 55, 86, 265
BspLI GGNNCC 2 cut(s) 228, 276
BspPI GGATC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 12, 209
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 3 cut(s) 146, 156, 243
BssT1I CCWWGG 2 cut(s) 12, 209
Bst4CI ACNGT 2 cut(s) 279, 452
BstC8I GCNNGC 4 cut(s) 28, 70, 86, 273
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 42, 418
BstFNI CGCG 3 cut(s) 55, 86, 265
BstHHI GCGC 3 cut(s) 57, 86, 88
BstKTI GATC 3 cut(s) 149, 159, 246
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 146, 156, 243
BstMCI CGRYCG 3 cut(s) 135, 269, 302
BstMWI GCNNNNNNNGC 3 cut(s) 92, 131, 262
BstUI CGCG 3 cut(s) 55, 86, 265
BstV2I GAAGAC 3 cut(s) 69, 84, 180
BstZI CGGCCG 1 cut(s) 132
BsuRI GGCC 5 cut(s) 8, 72, 134, 214, 256
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 42, 418
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 28, 70, 86, 273
CfoI GCGC 3 cut(s) 57, 86, 88
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 254, 479
CseI GACGC 2 cut(s) 74, 271
CviAII CATG 1 cut(s) 210
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 148, 158, 245
DpnII GATC 3 cut(s) 146, 156, 243
DraIII CACNNNGTG 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 12, 209
Eco47I GGWCC 1 cut(s) 479
Eco52I CGGCCG 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 12, 209
ErhI CCWWGG 2 cut(s) 12, 209
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 1 cut(s) 213
FaiI YATR 2 cut(s) 211, 501
FatI CATG 1 cut(s) 209
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 126, 286
FokI GGATG 2 cut(s) 29, 425
Fsp4HI GCNGC 2 cut(s) 126, 286
GlaI GCGC 3 cut(s) 56, 85, 87
GluI GCNGC 2 cut(s) 126, 286
GsaI CCCAGC 3 cut(s) 95, 255, 426
HaeIII GGCC 5 cut(s) 8, 72, 134, 214, 256
HapII CCGG 1 cut(s) 272
HgaI GACGC 2 cut(s) 74, 271
HhaI GCGC 3 cut(s) 57, 86, 88
Hin1II CATG 1 cut(s) 213
Hin6I GCGC 3 cut(s) 55, 84, 86
HinP1I GCGC 3 cut(s) 55, 84, 86
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 144
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 124, 470
HpyCH4III ACNGT 2 cut(s) 279, 452
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 131, 262
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 1 cut(s) 213
HspAI GCGC 3 cut(s) 55, 84, 86
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 3 cut(s) 146, 156, 243
LmnI GCTCC 3 cut(s) 23, 93, 248
LpnPI CCDG 8 cut(s) 12, 54, 105, 228, 237, 270, 285, 408
MaeIII GTNAC 2 cut(s) 141, 203
MalI GATC 3 cut(s) 148, 158, 245
MboI GATC 3 cut(s) 146, 156, 243
MboII GAAGA 8 cut(s) 74, 89, 151, 185, 191, 389, 454, 457
MluCI AATT 2 cut(s) 432, 483
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 408, 472
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 95, 233
MspI CCGG 1 cut(s) 272
MvnI CGCG 3 cut(s) 55, 86, 265
MwoI GCNNNNNNNGC 3 cut(s) 92, 131, 262
NaeI GCCGGC 1 cut(s) 273
NcoI CCATGG 1 cut(s) 209
NdeII GATC 3 cut(s) 146, 156, 243
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 2 cut(s) 228, 276
NmuCI GTSAC 2 cut(s) 141, 203
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 275
PdiI GCCGGC 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 265
PkrI GCNGC 2 cut(s) 127, 287
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspFI CCCAGC 3 cut(s) 91, 251, 422
PspN4I GGNNCC 2 cut(s) 228, 276
PspPI GGNCC 2 cut(s) 254, 479
PsyI GACNNNGTC 1 cut(s) 265
PteI GCGCGC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 126, 286
Sau3AI GATC 3 cut(s) 146, 156, 243
Sau96I GGNCC 2 cut(s) 254, 479
SchI GAGTC 1 cut(s) 92
SinI GGWCC 1 cut(s) 479
Sse9I AATT 2 cut(s) 432, 483
SsiI CCGC 7 cut(s) 53, 95, 126, 165, 231, 265, 285
StyI CCWWGG 2 cut(s) 12, 209
TaaI ACNGT 2 cut(s) 279, 452
TaqI TCGA 3 cut(s) 60, 75, 155
TaqII GACCGA 1 cut(s) 288
TasI AATT 2 cut(s) 432, 483
TauI GCSGC 2 cut(s) 128, 288
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 141, 203
Tsp45I GTSAC 2 cut(s) 141, 203
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 1 cut(s) 208
Tth111I GACNNNGTC 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.