pycom17g19920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011181
Physical Location & Seq
Reverse (-)
18026882 .. 18027544
663 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g19920.1

Sequence Viewer

Length: 663 bp
ATGACACGTGTACAGCGGATAAGATATCAGAGCTACAAGGAAGCCGCAACTGTTTACTCAAGCAACCAAACAGACCCAATAGTTTCTACATCGATCGCTGGCGTTGCACTTCCTCTTCTTCCTCGATGCTTTTCTTCCTCTCTGATTTCAACGATGGAGGCCACCGAGAATAAAGGAGCTGGGATACTGCACCACATCCTCCCTCCGCGTCTCGAAGACGCTGGCCTCGAAGACTGTGCCCTCCCGCCAGACTCCATCAAGGAAGCCTTCCTCAAAGCAGCAACGGCCGTCAAGTCGCCCGCCACCTCGATCTTCACCTCCGACGAAGACGAGGAATCGTTCGAAGATTGCGTCAATGACCCCTGGCCGGACCTGAAGGATCACACCGGCGAGCTGGTCGGAACCGAGCCGAAGACTCGGTCGGCGGGATCGTGCGGCGGAAACAAGAGTGGGTCGGTGGAGGTCGGCGGTGATGAAGTGGTGGTGGGCGGTGAGAAGGAGAAAGGGGATAAGGTGATCGTGGGAGGTGAGGACGTGAGAGGTGGTGGGGAGAGGGATTGTGTGGATGGATTGGCGGGATTAGAGATCGGCGAGAAGAAGAAGGGTGAGGAGGAGGAAGAGAAAGATGGCGGAGGACCAATTTTGGTGGGAGGTTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

23.11

Weight (kDa)

4.54

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 208
AclWI GGATC 2 cut(s) 387, 436
AcoI YGGCCR 2 cut(s) 285, 365
AcuI CTGAAG 1 cut(s) 395
AcvI CACGTG 1 cut(s) 8
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 2 cut(s) 5, 7
AgsI TTSAA 1 cut(s) 150
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 3 cut(s) 33, 179, 394
AluI AGCT 3 cut(s) 33, 179, 394
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 387, 436
AoxI GGCC 4 cut(s) 159, 223, 285, 365
ApeKI GCWGC 1 cut(s) 278
ArsI GACNNNNNNTTYG 4 cut(s) 336, 368, 404, 436
AspS9I GGNCC 2 cut(s) 370, 635
AsuHPI GGTGA 6 cut(s) 307, 482, 503, 526, 539, 617
AsuII TTCGAA 1 cut(s) 342
AvaII GGWCC 2 cut(s) 370, 635
BaeGI GKGCMC 1 cut(s) 241
BbrPI CACGTG 1 cut(s) 8
BbsI GAAGAC 4 cut(s) 222, 237, 333, 419
BbvI GCAGC 1 cut(s) 290
BccI CCATC 4 cut(s) 148, 263, 560, 620
BceAI ACGGC 2 cut(s) 272, 300
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 364
BciVI GTATCC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 215
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 3 cut(s) 45, 279, 436
BlsI GCNGC 3 cut(s) 46, 280, 437
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 2 cut(s) 370, 635
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 2 cut(s) 370, 635
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 1 cut(s) 116
BpiI GAAGAC 4 cut(s) 222, 237, 333, 419
Bpu14I TTCGAA 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 362
BsaXI ACNNNNNCTCC 1 cut(s) 642
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 386
BseBI CCWGG 1 cut(s) 364
BseCI ATCGAT 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 195, 571
BseLI CCNNNNNNNGG 1 cut(s) 367
BseRI GAGGAG 2 cut(s) 623, 626
BseSI GKGCMC 1 cut(s) 241
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 290
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 208
Bsh1285I CGRYCG 3 cut(s) 96, 288, 422
BshFI GGCC 4 cut(s) 161, 225, 287, 367
BshVI ATCGAT 1 cut(s) 92
BsiEI CGRYCG 3 cut(s) 96, 288, 422
BsiSI CCGG 2 cut(s) 368, 387
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
BsnI GGCC 4 cut(s) 161, 225, 287, 367
Bsp119I TTCGAA 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 10
Bsp143I GATC 6 cut(s) 93, 309, 379, 428, 516, 585
BspANI GGCC 4 cut(s) 161, 225, 287, 367
BspDI ATCGAT 1 cut(s) 92
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 2 cut(s) 387, 436
BspT104I TTCGAA 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 386
BsrGI TGTACA 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 6 cut(s) 93, 309, 379, 428, 516, 585
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 52, 236
Bst6I CTCTTC 2 cut(s) 120, 612
BstAUI TGTACA 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 4 cut(s) 100, 223, 300, 392
BstF5I GGATG 2 cut(s) 195, 571
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 6 cut(s) 96, 312, 382, 431, 519, 588
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 6 cut(s) 93, 309, 379, 428, 516, 585
BstMCI CGRYCG 3 cut(s) 96, 288, 422
BstMWI GCNNNNNNNGC 2 cut(s) 104, 284
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 4 cut(s) 222, 237, 333, 419
BstZI CGGCCG 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 92
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 4 cut(s) 161, 225, 287, 367
BsuTUI ATCGAT 1 cut(s) 92
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 2 cut(s) 195, 571
Cac8I GCNNGC 4 cut(s) 100, 223, 300, 392
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 370, 635
ClaI ATCGAT 1 cut(s) 92
CseI GACGC 3 cut(s) 197, 227, 340
Csp6I GTAC 1 cut(s) 11
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviQI GTAC 1 cut(s) 11
DpnI GATC 6 cut(s) 95, 311, 381, 430, 518, 587
DpnII GATC 6 cut(s) 93, 309, 379, 428, 516, 585
EaeI YGGCCR 2 cut(s) 285, 365
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 120, 612
EarI CTCTTC 2 cut(s) 120, 612
EciI GGCGGA 2 cut(s) 453, 645
EclXI CGGCCG 1 cut(s) 285
Eco32I GATATC 1 cut(s) 26
Eco47I GGWCC 2 cut(s) 370, 635
Eco52I CGGCCG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 395
Eco72I CACGTG 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 215
FaiI YATR 1 cut(s) 657
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FauI CCCGC 4 cut(s) 252, 307, 418, 568
Fnu4HI GCNGC 3 cut(s) 45, 279, 436
FokI GGATG 2 cut(s) 182, 578
Fsp4HI GCNGC 3 cut(s) 45, 279, 436
GluI GCNGC 3 cut(s) 45, 279, 436
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 4 cut(s) 161, 225, 287, 367
HapII CCGG 2 cut(s) 368, 387
HgaI GACGC 3 cut(s) 197, 227, 340
HinfI GANTC 3 cut(s) 251, 335, 415
HpaII CCGG 2 cut(s) 368, 387
HphI GGTGA 6 cut(s) 307, 482, 503, 526, 539, 617
Hpy166II GTNNAC 2 cut(s) 11, 55
Hpy188I TCNGA 4 cut(s) 30, 144, 322, 401
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 11, 55
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 4 cut(s) 277, 370, 490, 595
HpyCH4III ACNGT 2 cut(s) 52, 236
HpyCH4IV ACGT 2 cut(s) 7, 534
HpyCH4V TGCA 2 cut(s) 107, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 284
HpySE526I ACGT 2 cut(s) 7, 534
Kzo9I GATC 6 cut(s) 93, 309, 379, 428, 516, 585
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 116
MaeII ACGT 2 cut(s) 7, 534
MalI GATC 6 cut(s) 95, 311, 381, 430, 518, 587
MboI GATC 6 cut(s) 93, 309, 379, 428, 516, 585
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 1 cut(s) 639
MlyI GAGTC 2 cut(s) 245, 409
MmeI TCCRAC 2 cut(s) 345, 379
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 2 cut(s) 368, 387
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 104, 284
NdeII GATC 6 cut(s) 93, 309, 379, 428, 516, 585
NlaIV GGNNCC 1 cut(s) 403
NspV TTCGAA 1 cut(s) 342
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 348, 428
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 418
PkrI GCNGC 3 cut(s) 46, 280, 437
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 2 cut(s) 245, 409
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
PpsI GAGTC 2 cut(s) 245, 409
Ppu21I YACGTR 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 362
PspCI CACGTG 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 2 cut(s) 370, 635
PsyI GACNNNGTC 1 cut(s) 418
PvuI CGATCG 1 cut(s) 96
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SatI GCNGC 3 cut(s) 45, 279, 436
Sau3AI GATC 6 cut(s) 93, 309, 379, 428, 516, 585
Sau96I GGNCC 2 cut(s) 370, 635
SchI GAGTC 2 cut(s) 245, 409
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 241
SfaNI GCATC 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 342
SgrAI CRCCGGYG 1 cut(s) 386
SinI GGWCC 2 cut(s) 370, 635
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 52, 236
TaiI ACGT 2 cut(s) 10, 537
TaqI TCGA 6 cut(s) 92, 124, 213, 228, 308, 342
TaqII GACCGA 1 cut(s) 408
TasI AATT 1 cut(s) 639
TatI WGTACW 1 cut(s) 10
TauI GCSGC 2 cut(s) 47, 438
TfiI GAWTC 1 cut(s) 335
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 489
Tth111I GACNNNGTC 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 370, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.