FvH4_6g22601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011181
Physical Location & Seq
Reverse (-)
16249080 .. 16249703
624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22601.t1

Sequence Viewer

Length: 366 bp
ATGCGGCCGCCCAATCGTCCTTTCCCTCCCACTCTCCCAGCCTTCCTCAAAGCCGCCACCGCCATCAAGTCACGCCCCACCTCCATCTTCACCGCCTCCGACGACGAAGACGACGACTGCGTCAACGATCCATGGGAAGCGCGTCCCGACGCGGCTGTTGTCGTGGCCAAGACGGAGGCAGATCCGCCAGGAGGTTGCGACATAGATAATTGTGGAGCTGTGGTGGTTGGCAGAGATGCAGTGGTGGTGGCCGGCGAGGAGGAGATGAGGGATAAGATTGAAGACAAGAAGAAGAATGAGGGTCCTATGTTGGTTGGGGTGGATAAGAATCGCCACGTGTCGGTGCACAATTGGGCAGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.02

Weight (kDa)

4.74

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccII CGCG 2 cut(s) 142, 152
AciI CCGC 7 cut(s) 4, 8, 54, 60, 93, 152, 185
AclWI GGATC 2 cut(s) 122, 176
AcoI YGGCCR 3 cut(s) 5, 165, 249
AcvI CACGTG 1 cut(s) 337
AfiI CCNNNNNNNGG 2 cut(s) 191, 340
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 348
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 2 cut(s) 122, 176
AoxI GGCC 3 cut(s) 5, 165, 249
ApaLI GTGCAC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 167
BbrPI CACGTG 1 cut(s) 337
BbsI GAAGAC 2 cut(s) 114, 288
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 2 cut(s) 71, 92
BciT130I CCWGG 1 cut(s) 189
BisI GCNGC 4 cut(s) 5, 8, 54, 153
BlsI GCNGC 4 cut(s) 6, 9, 55, 154
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 2 cut(s) 114, 288
BsaAI YACGTR 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 340
Bse118I RCCGGY 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 191, 340
BseRI GAGGAG 2 cut(s) 272, 275
BseSI GKGCMC 1 cut(s) 348
BseX3I CGGCCG 1 cut(s) 5
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 142, 152
Bsh1285I CGRYCG 1 cut(s) 8
BshFI GGCC 3 cut(s) 7, 167, 251
BsiEI CGRYCG 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 191, 340
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 3 cut(s) 7, 167, 251
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 127, 181
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 7 cut(s) 4, 8, 54, 60, 93, 152, 185
BspANI GGCC 3 cut(s) 7, 167, 251
BspFNI CGCG 2 cut(s) 142, 152
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 2 cut(s) 122, 176
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 127, 181
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 131
BstFNI CGCG 2 cut(s) 142, 152
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 130, 184
BstMBI GATC 2 cut(s) 127, 181
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 2 cut(s) 142, 152
BstV2I GAAGAC 2 cut(s) 114, 288
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BstZI CGGCCG 1 cut(s) 5
BsuRI GGCC 3 cut(s) 7, 167, 251
BtgI CCRYGG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 253
CciNI GCGGCCGC 1 cut(s) 5
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 3 cut(s) 109, 131, 158
CviAII CATG 2 cut(s) 132, 363
CviJI RGCY 7 cut(s) 7, 41, 53, 155, 167, 218, 251
CviKI_1 RGCY 7 cut(s) 7, 41, 53, 155, 167, 218, 251
DpnI GATC 2 cut(s) 129, 183
DpnII GATC 2 cut(s) 127, 181
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 3 cut(s) 5, 165, 249
EagI CGGCCG 1 cut(s) 5
EciI GGCGGA 1 cut(s) 174
EclXI CGGCCG 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 302
Eco52I CGGCCG 1 cut(s) 5
Eco72I CACGTG 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 135, 366
FaiI YATR 4 cut(s) 133, 203, 308, 364
FaqI GGGAC 1 cut(s) 129
FatI CATG 2 cut(s) 131, 362
Fnu4HI GCNGC 4 cut(s) 5, 8, 54, 153
Fsp4HI GCNGC 4 cut(s) 5, 8, 54, 153
GlaI GCGC 1 cut(s) 141
GluI GCNGC 4 cut(s) 5, 8, 54, 153
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 3 cut(s) 7, 167, 251
HapII CCGG 1 cut(s) 252
HgaI GACGC 3 cut(s) 109, 131, 158
HhaI GCGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 135, 366
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 124, 346
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 2 cut(s) 124, 346
Hpy99I CGWCG 4 cut(s) 104, 107, 116, 152
HpyAV CCTTC 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 239, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 2 cut(s) 135, 366
HspAI GCGC 1 cut(s) 140
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 127, 181
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 4 cut(s) 51, 174, 201, 265
LweI GCATC 1 cut(s) 226
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 69
MalI GATC 2 cut(s) 129, 183
MboI GATC 2 cut(s) 127, 181
MboII GAAGA 5 cut(s) 79, 119, 293, 301, 304
MfeI CAATTG 1 cut(s) 349
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 348
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 208, 349
MluNI TGGCCA 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 251
MscI TGGCCA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 189
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 2 cut(s) 142, 152
MwoI GCNNNNNNNGC 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 253
NcoI CCATGG 1 cut(s) 131
NdeII GATC 2 cut(s) 127, 181
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 135, 366
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 69
NotI GCGGCCGC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 3 cut(s) 108, 111, 117
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 4 cut(s) 6, 9, 55, 154
PmaCI CACGTG 1 cut(s) 337
PmlI CACGTG 1 cut(s) 337
Ppu21I YACGTR 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 187
PspCI CACGTG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 302
PspPPI RGGWCCY 1 cut(s) 302
PsuI RGATCY 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 119
SatI GCNGC 4 cut(s) 5, 8, 54, 153
Sau3AI GATC 2 cut(s) 127, 181
Sau96I GGNCC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 348
SetI ASST 4 cut(s) 83, 196, 220, 339
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 302
Sse9I AATT 2 cut(s) 208, 349
SsiI CCGC 7 cut(s) 4, 8, 54, 60, 93, 152, 185
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 131
TaiI ACGT 1 cut(s) 339
TasI AATT 2 cut(s) 208, 349
TauI GCSGC 4 cut(s) 7, 10, 56, 155
TfiI GAWTC 1 cut(s) 328
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 246
Tth111I GACNNNGTC 1 cut(s) 119
VneI GTGCAC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.