FvH4_6g31600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011181
Physical Location & Seq
Forward (+)
24706289 .. 24707865
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31600.t1

Sequence Viewer

Length: 480 bp
ATGGAGGCCACCGACGAACAACCCGGACTGCTCCACCGCATCCACCCTCCCCGCCTCGAAGATGCCGGTCTCGAGGACTGCGCCCTCCCGCCGGACTCCATCAAAGAAGCCTTCCTCAAAGCCGCCACCGCCGTCAAGTCACGCGCCACCTCCATCTTCACCTCCGACGACGACGAAGACGACTGCGTCGACGATCCCTGGGAAGCGCGGCCCGACGCGGTGGTCGGGGCCGAGACGGATGCGAATCCGGGAGGTTGCGGCGGAGAGAAGGGCGGAGCTGTGGAGGTCGGCGGAGACGAAGTGGTGGTGGGCGGCGAGGAGGAGATGAGGGATAAGGTGATTGTGGGAGGCGAAGATGTGAGAGAGGTCGGTGGAGATAAGGCTTGTGTGGATGGGTTGGTTGGGTTAGAGATCGGAGACAAGAATAAGAAGAAGAAGGATAATGATGAGGGTCCTATTTTGGTTGGGGGTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

16.56

Weight (kDa)

4.22

Isoelectric Point (pI)

27.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15230
fragaria_vesca FvH4_1g12841 FvH4_5g24053 FvH4_6g22601 FvH4_6g31600 FvH4_6g40281 FvH4_7g17200
malus_domestica MD17G1192500.v1.1
prunus_persica Prupe.3G068600_v2.0.a1
pyrus_communis pycom17g19920
rosa_chinensis RchiOBHm_Chr2g0138661
rosa_laevigata RLG00000019752
rosa_multiflora Rmu_co8090160.1_g000001 Rmu_ssc0000210.1_g000005
rosa_rugosa Rorug02G0352000
rosa_samantha Rh2AG401500 Rh2BG406000 Rh2CG387700 Rh2DG421700
rosa_wichuraiana Rw2G032640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 185, 221
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 144, 208, 218
AclWI GGATC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 91
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw26I GTCTC 4 cut(s) 74, 227, 288, 411
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 6, 209, 228
AspLEI GCGC 3 cut(s) 83, 146, 208
AspS9I GGNCC 3 cut(s) 210, 228, 452
AsuC2I CCSGG 2 cut(s) 24, 249
AsuHPI GGTGA 2 cut(s) 151, 349
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 183
BccI CCATC 3 cut(s) 107, 161, 386
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 2 cut(s) 24, 249
BcoDI GTCTC 4 cut(s) 74, 227, 288, 411
BisI GCNGC 4 cut(s) 123, 209, 259, 313
BlsI GCNGC 4 cut(s) 124, 210, 260, 314
Bme1390I CCNGG 3 cut(s) 24, 199, 249
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 210, 228, 452
BmiI GGNNCC 2 cut(s) 229, 453
BmrFI CCNGG 3 cut(s) 24, 199, 249
BmsI GCATC 3 cut(s) 48, 52, 229
BpiI GAAGAC 1 cut(s) 183
BpuMI CCSGG 2 cut(s) 24, 249
BsaBI GATNNNNATC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 197, 198
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 197, 198
BseGI GGATG 3 cut(s) 39, 244, 397
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 332, 335
Bsh1236I CGCG 3 cut(s) 144, 208, 218
BshFI GGCC 3 cut(s) 8, 211, 230
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 4 cut(s) 24, 66, 92, 248
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 4 cut(s) 74, 227, 288, 411
BsmBI CGTCTC 2 cut(s) 227, 288
BsnI GGCC 3 cut(s) 8, 211, 230
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 2 cut(s) 193, 411
BspANI GGCC 3 cut(s) 8, 211, 230
BspFNI CGCG 3 cut(s) 144, 208, 218
BspLI GGNNCC 2 cut(s) 229, 453
BspPI GGATC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 197, 198
BssMI GATC 2 cut(s) 193, 411
Bst2UI CCWGG 1 cut(s) 199
BstF5I GGATG 3 cut(s) 39, 244, 397
BstFNI CGCG 3 cut(s) 144, 208, 218
BstHHI GCGC 3 cut(s) 83, 146, 208
BstKTI GATC 2 cut(s) 196, 414
BstMAI GTCTC 4 cut(s) 74, 227, 288, 411
BstMBI GATC 2 cut(s) 193, 411
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 22, 197, 247
BstUI CGCG 3 cut(s) 144, 208, 218
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 3 cut(s) 8, 211, 230
BtsCI GGATG 3 cut(s) 39, 244, 397
CfoI GCGC 3 cut(s) 83, 146, 208
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 210, 228, 452
CseI GACGC 2 cut(s) 175, 224
CviJI RGCY 7 cut(s) 8, 110, 122, 211, 230, 278, 383
CviKI_1 RGCY 7 cut(s) 8, 110, 122, 211, 230, 278, 383
DpnI GATC 2 cut(s) 195, 413
DpnII GATC 2 cut(s) 193, 411
DrdI GACNNNNNNGTC 2 cut(s) 185, 221
DseDI GACNNNNNNGTC 2 cut(s) 185, 221
EciI GGCGGA 3 cut(s) 276, 288, 306
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 197
Esp3I CGTCTC 2 cut(s) 227, 288
FaiI YATR 1 cut(s) 474
FauI CCCGC 2 cut(s) 59, 96
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 123, 209, 259, 313
FokI GGATG 3 cut(s) 26, 251, 404
Fsp4HI GCNGC 4 cut(s) 123, 209, 259, 313
GlaI GCGC 3 cut(s) 82, 145, 207
GluI GCNGC 4 cut(s) 123, 209, 259, 313
HaeIII GGCC 3 cut(s) 8, 211, 230
HapII CCGG 4 cut(s) 24, 66, 92, 248
HgaI GACGC 2 cut(s) 175, 224
HhaI GCGC 3 cut(s) 83, 146, 208
Hin6I GCGC 3 cut(s) 81, 144, 206
HinP1I GCGC 3 cut(s) 81, 144, 206
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 2 cut(s) 95, 244
HpaII CCGG 4 cut(s) 24, 66, 92, 248
HphI GGTGA 2 cut(s) 151, 349
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 166, 416
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 7 cut(s) 17, 170, 173, 176, 191, 194, 218
HpyAV CCTTC 3 cut(s) 121, 262, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HspAI GCGC 3 cut(s) 81, 144, 206
Kzo9I GATC 2 cut(s) 193, 411
LmnI GCTCC 2 cut(s) 36, 275
LpnPI CCDG 6 cut(s) 37, 79, 105, 184, 211, 261
LweI GCATC 3 cut(s) 48, 52, 229
MaeIII GTNAC 1 cut(s) 138
MalI GATC 2 cut(s) 195, 413
MboI GATC 2 cut(s) 193, 411
MboII GAAGA 6 cut(s) 71, 148, 188, 365, 442, 445
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 189
MseI TTAA 1 cut(s) 478
MspI CCGG 4 cut(s) 24, 66, 92, 248
MspR9I CCNGG 3 cut(s) 24, 199, 249
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 3 cut(s) 144, 208, 218
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 2 cut(s) 24, 249
NdeII GATC 2 cut(s) 193, 411
NlaIV GGNNCC 2 cut(s) 229, 453
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 138
PaeR7I CTCGAG 1 cut(s) 71
PasI CCCWGGG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 186, 294
PfeI GAWTC 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 4 cut(s) 124, 210, 260, 314
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 229, 453
PspPI GGNCC 3 cut(s) 210, 228, 452
PspPPI RGGWCCY 1 cut(s) 452
PsyI GACNNNGTC 1 cut(s) 185
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 4 cut(s) 123, 209, 259, 313
Sau3AI GATC 2 cut(s) 193, 411
Sau96I GGNCC 3 cut(s) 210, 228, 452
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 24, 199, 249
SetI ASST 7 cut(s) 152, 164, 256, 280, 288, 339, 369
SfaNI GCATC 3 cut(s) 48, 52, 229
Sfr274I CTCGAG 1 cut(s) 71
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 22, 197, 247
TaqI TCGA 3 cut(s) 57, 72, 189
TauI GCSGC 4 cut(s) 125, 211, 261, 315
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TseFI GTSAC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 251
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.