Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Reverse (-)

5554843 .. 5556844

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGTCTTCATCGGATTCATGGATGAGAGCATACAACGAGGCTTTAAAACTCTCTGAGGAGATTAATGGAATGATATCAGAAAGAAGTTCATCGGCTGTCACAGGGCCTGATGCTCAGCGTCGTGCTTCAGCTATACGAAGGAAGATCACCATTTTCGGTAACAAATTAGATAGTCTGCAGTCTCTTCTTGCTGAAATTCATGGAAAACCTATTTCAGAGAAAGAGATGAATCGGCGAAAGGATATGGTAGGGAATCTGAGGTCAAAAGCAAACCAGATGGCGAATGCTTTGAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTCGGGCCAGATATCAAGCCGGATGATTCCATGAGCAGAGTTACTGGCATGGATAACCAAGGAATTGTTGGATATCAACGACAAGTTATGAGAGAACAAGACGAAGGACTTGAGCAATTGGAGGGAACAGTCATGAGCACAAAACACATTGCTCTGGCTGTTAGTGAAGAGCTTGACTTGCAGACTAGGCTTATTGATGACTTAGATTACCATGTGGATGTTACTGACTCTCGCTTAAGGAGAGTGCAGAAGAGCCTTGCTGTCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAATGCTCTTGTCAGTGCTGGGGATCGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

232

Amino Acids

25.89

Weight (kDa)

7.77

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	5
AflII	CTTAAG	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	3 cut(s)	134, 324, 499
AluI	AGCT	3 cut(s)	134, 324, 499
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	189, 312
AlwI	GGATC	1 cut(s)	659
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	107, 332
ApoI	RAATTY	1 cut(s)	198
AseI	ATTAAT	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	107, 332
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	467
BccI	CCATC	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	189, 312
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	562
BlpI	GCTNAGC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	107, 332
BmsI	GCATC	1 cut(s)	103
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	4 cut(s)	30, 355, 550, 684
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	3 cut(s)	48, 131, 251
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	593
BshFI	GGCC	2 cut(s)	109, 334
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	189, 312
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	109, 334
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	147, 651
Bsp1720I	GCTNAGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	109, 334
BspCNI	CTCAG	3 cut(s)	49, 130, 252
BspHI	TCATGA	2 cut(s)	459, 591
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	659
BspQI	GCTCTTC	2 cut(s)	489, 572
BspTI	CTTAAG	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	147, 651
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	3 cut(s)	192, 489, 572
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	4 cut(s)	57, 117, 260, 529
BstF5I	GGATG	4 cut(s)	30, 355, 550, 684
BstKTI	GATC	2 cut(s)	150, 654
BstMAI	GTCTC	2 cut(s)	189, 312
BstMBI	GATC	2 cut(s)	147, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	505, 514
BstNSI	RCATGY	2 cut(s)	301, 628
BstSFI	CTRYAG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	109, 334
BtsCI	GGATG	4 cut(s)	30, 355, 550, 684
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	1 cut(s)	326
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	2 cut(s)	459, 591
Cfr13I	GGNCC	2 cut(s)	107, 332
CseI	GACGC	1 cut(s)	110
CviAII	CATG	9 cut(s)	21, 203, 298, 358, 376, 460, 539, 592, 625
DdeI	CTNAG	4 cut(s)	57, 117, 260, 529
DpnI	GATC	2 cut(s)	149, 653
DpnII	GATC	2 cut(s)	147, 651
DraI	TTTAAA	1 cut(s)	48
Eam1104I	CTCTTC	3 cut(s)	192, 489, 572
EarI	CTCTTC	3 cut(s)	192, 489, 572
Eco130I	CCWWGG	1 cut(s)	385
Eco32I	GATATC	3 cut(s)	78, 340, 401
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRV	GATATC	3 cut(s)	78, 340, 401
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	9 cut(s)	24, 206, 301, 361, 379, 463, 542, 595, 628
FatI	CATG	9 cut(s)	20, 202, 297, 357, 375, 459, 538, 591, 624
FokI	GGATG	4 cut(s)	37, 362, 557, 691
FspBI	CTAG	1 cut(s)	513
GsaI	CCCAGC	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	109, 334
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	9 cut(s)	24, 206, 301, 361, 379, 463, 542, 595, 628
HinfI	GANTC	5 cut(s)	17, 232, 256, 353, 554
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	5 cut(s)	16, 58, 82, 220, 261
Hpy188III	TCNNGA	2 cut(s)	460, 592
Hpy99I	CGWCG	2 cut(s)	126, 659
HpyAV	CCTTC	2 cut(s)	135, 425
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	4 cut(s)	181, 508, 574, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	505, 514
HpyF3I	CTNAG	4 cut(s)	57, 117, 260, 529
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	9 cut(s)	24, 206, 301, 361, 379, 463, 542, 595, 628
Kzo9I	GATC	2 cut(s)	147, 651
LguI	GCTCTTC	2 cut(s)	489, 572
LpnPI	CCDG	8 cut(s)	90, 123, 290, 348, 357, 360, 467, 632
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	4 cut(s)	100, 161, 367, 547
MalI	GATC	2 cut(s)	149, 653
MboI	GATC	2 cut(s)	147, 651
MboII	GAAGA	4 cut(s)	157, 179, 506, 589
MfeI	CAATTG	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	4 cut(s)	167, 198, 390, 443
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	4 cut(s)	34, 52, 255, 442
MseI	TTAA	4 cut(s)	47, 66, 563, 687
MslI	CAYNNNNRTG	2 cut(s)	543, 629
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	505, 514
NdeII	GATC	2 cut(s)	147, 651
NlaIII	CATG	9 cut(s)	24, 206, 301, 361, 379, 463, 542, 595, 628
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	2 cut(s)	301, 628
PagI	TCATGA	2 cut(s)	459, 591
PciI	ACATGT	1 cut(s)	297
PciSI	GCTCTTC	2 cut(s)	489, 572
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	4 cut(s)	17, 232, 256, 353
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
PscI	ACATGT	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	646
PspPI	GGNCC	2 cut(s)	107, 332
PstI	CTGCAG	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	543, 629
SapI	GCTCTTC	2 cut(s)	489, 572
SaqAI	TTAA	4 cut(s)	47, 66, 563, 687
Sau3AI	GATC	2 cut(s)	147, 651
Sau96I	GGNCC	2 cut(s)	107, 332
SchI	GAGTC	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	5 cut(s)	136, 214, 266, 326, 501
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	543, 629
SmlI	CTYRAG	2 cut(s)	437, 562
SmoI	CTYRAG	2 cut(s)	437, 562
Sse9I	AATT	4 cut(s)	167, 198, 390, 443
SspMI	CTAG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	457
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	4 cut(s)	167, 198, 390, 443
TfiI	GAWTC	4 cut(s)	17, 232, 256, 353
Tru1I	TTAA	4 cut(s)	47, 66, 563, 687
Tru9I	TTAA	4 cut(s)	47, 66, 563, 687
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	5 cut(s)	9, 81, 191, 245, 608
TspRI	CASTG	1 cut(s)	648
Vha464I	CTTAAG	1 cut(s)	562
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	2 cut(s)	301, 628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.