Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Forward (+)

29946185 .. 29948807

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCTCTTCTTCGGATCCATGGATGAGAGAGTACAATGAGGCTTTGAAACTCTCTGAGGATATTAATGGCATGATGTCTGAAAGGAATGCCTCCGGGTTAACCGGGCCTGATGCTCAACGTCGTGCCTCTGCAATTCGAAGAAAGATCACCATTTTGGGGACTCGATTAGACAGTCTGCAATCCCTTCTTGTCAAGGTTCCTGGCAAGCAGCATGTTTCGGAGAAAGAGATGAATCGTCGCAAGGATATGGTTGGGAATTTGAGATCAAAAACAAATCAGGTGGCCTCTGCTTTGAATATGTCAAACTTTGCAAACAGAGACAGCTTGTTTGGAACAGATTTAAAGCCGGATGATGCGATAAATAGAGTCTCTGGCATGGACAACCAAGGAATTGTTGTATTTCAACGGCAAGTTATGAGAGAACAAGACGAGGGACTTGAGAAGTTGGAGGAAACAGTCATGAGTACCAAACACATTGCTCTCGCTGTTAACGAGGAGCTCACCCTGCAGACAAGGCTTATTGATGACTTAGATTACGATGTGGATATCACTGACTCTCGCTTACGGCGTGTTCAAAAGAGCCTTGCCTTGATGAACAAGAGCATGAAAAGTGGTTGCTCATGCATGTCTATGCTCTTGTCTGTGCTTGGAATCGTTGGTCTTGCTCTTGTAATTTGGCTGCTGGTTAAGTACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

233

Amino Acids

26.11

Weight (kDa)

8.51

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	205 - 256	1.6e-11	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	11, 24
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	3 cut(s)	35, 469, 695
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	49, 298, 407, 578
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	2 cut(s)	327, 502
AluI	AGCT	2 cut(s)	327, 502
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	315, 376
AlwI	GGATC	2 cut(s)	11, 24
AoxI	GGCC	3 cut(s)	3, 107, 285
ApeKI	GCWGC	2 cut(s)	211, 682
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AseI	ATTAAT	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	2 cut(s)	97, 106
AsuHPI	GGTGA	2 cut(s)	142, 496
AsuII	TTCGAA	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	223, 669
BceAI	ACGGC	2 cut(s)	425, 584
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	97, 106
BcoDI	GTCTC	2 cut(s)	315, 376
BfmI	CTRYAG	1 cut(s)	509
BisI	GCNGC	2 cut(s)	212, 683
BlsI	GCNGC	2 cut(s)	213, 684
Bme1390I	CCNGG	3 cut(s)	97, 106, 204
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	18, 201
BmrFI	CCNGG	3 cut(s)	97, 106, 204
BmsI	GCATC	2 cut(s)	103, 346
Bpu14I	TTCGAA	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	97, 106
BsaJI	CCNNGG	2 cut(s)	20, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	20, 388
BseGI	GGATG	2 cut(s)	30, 358
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	223, 669
BshFI	GGCC	3 cut(s)	5, 109, 287
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	3 cut(s)	96, 105, 350
BslFI	GGGAC	2 cut(s)	175, 450
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	2 cut(s)	315, 376
BsmFI	GGGAC	2 cut(s)	175, 450
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	5, 109, 287
Bsp119I	TTCGAA	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	16, 147, 266
Bsp19I	CCATGG	1 cut(s)	20
BspANI	GGCC	3 cut(s)	5, 109, 287
BspCNI	CTCAG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	18, 201
BspMAI	CTGCAG	1 cut(s)	513
BspPI	GGATC	2 cut(s)	11, 24
BspT104I	TTCGAA	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	20, 388
BssMI	GATC	3 cut(s)	16, 147, 266
BssT1I	CCWWGG	2 cut(s)	20, 388
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	176, 460
Bst6I	CTCTTC	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	57, 532
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	30, 358
BstKTI	GATC	3 cut(s)	19, 150, 269
BstMAI	GTCTC	2 cut(s)	315, 376
BstMBI	GATC	3 cut(s)	16, 147, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 517
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	218, 631
BstSCI	CCNGG	3 cut(s)	95, 104, 202
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	223, 669
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	5, 109, 287
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	30, 358
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	34, 468, 694
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	8 cut(s)	21, 73, 215, 379, 463, 607, 624, 628
CviQI	GTAC	3 cut(s)	34, 468, 694
DdeI	CTNAG	2 cut(s)	57, 532
DpnI	GATC	3 cut(s)	18, 149, 268
DpnII	GATC	3 cut(s)	16, 147, 266
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	20, 388
Eco24I	GRGCYC	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	20, 388
EcoT22I	ATGCAT	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	20, 388
FaeI	CATG	8 cut(s)	24, 76, 218, 382, 466, 610, 627, 631
FaqI	GGGAC	2 cut(s)	175, 450
FatI	CATG	8 cut(s)	20, 72, 214, 378, 462, 606, 623, 627
Fnu4HI	GCNGC	2 cut(s)	212, 683
FokI	GGATG	2 cut(s)	37, 365
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	2 cut(s)	212, 683
GluI	GCNGC	2 cut(s)	212, 683
HaeIII	GGCC	3 cut(s)	5, 109, 287
HapII	CCGG	3 cut(s)	96, 105, 350
Hin1II	CATG	8 cut(s)	24, 76, 218, 382, 466, 610, 627, 631
HincII	GTYRAC	2 cut(s)	102, 493
HindII	GTYRAC	2 cut(s)	102, 493
HinfI	GANTC	5 cut(s)	163, 235, 369, 557, 654
HpaI	GTTAAC	2 cut(s)	102, 493
HpaII	CCGG	3 cut(s)	96, 105, 350
HphI	GGTGA	2 cut(s)	142, 496
Hpy166II	GTNNAC	2 cut(s)	102, 493
Hpy188I	TCNGA	4 cut(s)	16, 58, 82, 223
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	2 cut(s)	102, 493
Hpy99I	CGWCG	2 cut(s)	126, 243
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	176, 460
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	5 cut(s)	134, 181, 314, 511, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 517
HpyF3I	CTNAG	2 cut(s)	57, 532
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	8 cut(s)	24, 76, 218, 382, 466, 610, 627, 631
KspAI	GTTAAC	2 cut(s)	102, 493
Kzo9I	GATC	3 cut(s)	16, 147, 266
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	2 cut(s)	223, 669
LweI	GCATC	2 cut(s)	103, 346
MaeII	ACGT	1 cut(s)	121
MalI	GATC	3 cut(s)	18, 149, 268
MboI	GATC	3 cut(s)	16, 147, 266
MboII	GAAGA	2 cut(s)	3, 153
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	4 cut(s)	135, 259, 393, 675
MlyI	GAGTC	3 cut(s)	157, 378, 551
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	9 cut(s)	16, 34, 52, 103, 139, 298, 427, 445, 490
Mph1103I	ATGCAT	1 cut(s)	629
MseI	TTAA	5 cut(s)	66, 101, 344, 492, 690
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	3 cut(s)	96, 105, 350
MspR9I	CCNGG	3 cut(s)	97, 106, 204
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	508, 517
NciI	CCSGG	2 cut(s)	97, 106
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	16, 147, 266
NlaIII	CATG	8 cut(s)	24, 76, 218, 382, 466, 610, 627, 631
NlaIV	GGNNCC	2 cut(s)	18, 201
NsiI	ATGCAT	1 cut(s)	629
NspI	RCATGY	2 cut(s)	218, 631
NspV	TTCGAA	1 cut(s)	139
PagI	TCATGA	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 568
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	235, 654
PkrI	GCNGC	2 cut(s)	213, 684
PleI	GAGTC	3 cut(s)	157, 377, 551
PpsI	GAGTC	3 cut(s)	157, 377, 551
PshBI	ATTAAT	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	18, 201
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	3 cut(s)	35, 469, 695
RsaNI	GTAC	3 cut(s)	34, 468, 694
RseI	CAYNNNNRTG	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	5 cut(s)	66, 101, 344, 492, 690
SatI	GCNGC	2 cut(s)	212, 683
Sau3AI	GATC	3 cut(s)	16, 147, 266
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	3 cut(s)	157, 378, 551
ScrFI	CCNGG	3 cut(s)	97, 106, 204
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	6 cut(s)	124, 201, 285, 329, 504, 699
SfaNI	GCATC	2 cut(s)	103, 346
SfcI	CTRYAG	1 cut(s)	509
SfuI	TTCGAA	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	135, 259, 393, 675
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	95, 104, 202
StyI	CCWWGG	2 cut(s)	20, 388
TaaI	ACNGT	2 cut(s)	176, 460
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	139, 166
TasI	AATT	4 cut(s)	135, 259, 393, 675
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	235, 654
Tru1I	TTAA	5 cut(s)	66, 101, 344, 492, 690
Tru9I	TTAA	5 cut(s)	66, 101, 344, 492, 690
TscAI	CASTG	1 cut(s)	559
TseI	GCWGC	2 cut(s)	211, 682
TspDTI	ATGAA	3 cut(s)	248, 611, 623
TspRI	CASTG	1 cut(s)	559
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	2 cut(s)	218, 631
Zsp2I	ATGCAT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.