Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Reverse (-)

30459518 .. 30464005

Gene Structure 4488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1208900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGGAATATAATGAAGCAACAAAACTTGCCGATGATATCAATGGTATGATATCTGAATGGAGTACATTGCCCGCAGGTCCAGACACTCAGCGTCATGTCTCTGCTATACGGCGGAAGATTACAATATTGGGGACTAGACTTGATAGCTTACAGTCCCTTTTGTCAAAACTCCCTGGAAAACAGCATATAACAGAGAAAGAGATGAACCGTCGGAAGGATATGATAGGAAATTTAAGATTGAAAGTTAAGCAGATGGCTTCAACATTGACATCCAACACTGCCAACCGAGATATCTTGCTGGGATCAGAAATAAATAAAGCTGATGCCATGGGAAGAACAGTTGGCCTAGACAACTACGGCCTTGTTGGTTTGCAACGACAAATTATGAAAGCAGAGCAAGATGAGGGGCTCGAGAAATTGGAGGAGACTGTAGTAAGCACAAAACATATTGCATTGGCAGTCAATGAAGAACTTGACCTACACACTAGACTTATTGATGACTTGGATGATCAAGTGGAGGTTACGGACTCCCGGCTACGGCGGGTGCAGAAAAACTTGGCAGTTTTGAACAAGCGCACAAAGGGTGGTTGCTCCTGCATGTGCATGCTTTTATCTGTCGTCGGGATGGTGGTTCTGGTTGCCGTGATATTTTTGTTGATCAAATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

225

Amino Acids

25.03

Weight (kDa)

8.72

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	165 - 215	6.9e-09	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	3 cut(s)	75, 115, 544
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	217, 540
AgsI	TTSAA	3 cut(s)	244, 264, 571
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	2 cut(s)	150, 323
AluI	AGCT	2 cut(s)	150, 323
Alw26I	GTCTC	2 cut(s)	106, 422
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	346, 361
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	414
BccI	CCATC	2 cut(s)	250, 622
BceAI	ACGGC	4 cut(s)	128, 376, 557, 629
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	2 cut(s)	511, 660
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	106, 422
BfaI	CTAG	3 cut(s)	138, 350, 489
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	177, 535
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	177, 535
BmsI	GCATC	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	175, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 540
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	175, 330
BseGI	GGATG	3 cut(s)	272, 514, 633
BseLI	CCNNNNNNNGG	2 cut(s)	217, 540
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	2 cut(s)	348, 363
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	535
BslFI	GGGAC	2 cut(s)	142, 148
BslI	CCNNNNNNNGG	2 cut(s)	217, 540
BsmAI	GTCTC	2 cut(s)	106, 422
BsmFI	GGGAC	2 cut(s)	142, 148
BsnI	GGCC	2 cut(s)	348, 363
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	305, 511, 660
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	3 cut(s)	75, 115, 544
BspANI	GGCC	2 cut(s)	348, 363
BspCNI	CTCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	175, 330
BssMI	GATC	3 cut(s)	305, 511, 660
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	4 cut(s)	156, 212, 343, 433
BstC8I	GCNNGC	2 cut(s)	75, 608
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	272, 514, 633
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	3 cut(s)	308, 514, 663
BstMAI	GTCTC	2 cut(s)	106, 422
BstMBI	GATC	3 cut(s)	305, 511, 660
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	2 cut(s)	604, 610
BstSCI	CCNGG	2 cut(s)	175, 533
BstSFI	CTRYAG	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	348, 363
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	272, 514, 633
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	75, 608
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	4 cut(s)	98, 331, 601, 607
CviJI	RGCY	7 cut(s)	150, 260, 323, 348, 363, 412, 538
CviKI_1	RGCY	7 cut(s)	150, 260, 323, 348, 363, 412, 538
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	3 cut(s)	307, 513, 662
DpnII	GATC	3 cut(s)	305, 511, 660
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	3 cut(s)	40, 54, 295
Eco47I	GGWCC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	175
EcoRV	GATATC	3 cut(s)	40, 54, 295
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	4 cut(s)	101, 334, 604, 610
FaqI	GGGAC	2 cut(s)	142, 148
FatI	CATG	4 cut(s)	97, 330, 600, 606
FauI	CCCGC	2 cut(s)	82, 537
FbaI	TGATCA	2 cut(s)	511, 660
FokI	GGATG	3 cut(s)	259, 521, 640
FriOI	GRGCYC	1 cut(s)	414
FspBI	CTAG	3 cut(s)	138, 350, 489
GlaI	GCGC	1 cut(s)	578
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	348, 363
HapII	CCGG	1 cut(s)	535
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	4 cut(s)	101, 334, 604, 610
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HinfI	GANTC	1 cut(s)	530
HpaII	CCGG	1 cut(s)	535
Hpy188I	TCNGA	3 cut(s)	58, 216, 310
Hpy188III	TCNNGA	3 cut(s)	83, 415, 625
Hpy99I	CGWCG	2 cut(s)	216, 626
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	4 cut(s)	156, 212, 343, 433
HpyCH4V	TGCA	5 cut(s)	376, 455, 550, 600, 606
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	101, 334, 604, 610
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	2 cut(s)	511, 660
Kzo9I	GATC	3 cut(s)	305, 511, 660
LmnI	GCTCC	1 cut(s)	599
LpnPI	CCDG	8 cut(s)	63, 96, 162, 189, 287, 548, 610, 623
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	3 cut(s)	138, 350, 489
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	3 cut(s)	307, 513, 662
MboI	GATC	3 cut(s)	305, 511, 660
MboII	GAAGA	3 cut(s)	130, 348, 482
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	232, 384, 419
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	194, 300
MnlI	CCTC	3 cut(s)	400, 418, 514
MseI	TTAA	2 cut(s)	236, 249
MslI	CAYNNNNRTG	1 cut(s)	605
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	2 cut(s)	177, 535
MvaI	CCWGG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	535
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	305, 511, 660
NlaIII	CATG	4 cut(s)	101, 334, 604, 610
NspI	RCATGY	2 cut(s)	604, 610
PaeI	GCATGC	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	413
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	80
PsrI	GAACNNNNNNTAC	2 cut(s)	465, 497
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	2 cut(s)	236, 249
Sau3AI	GATC	3 cut(s)	305, 511, 660
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	177, 535
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	5 cut(s)	82, 152, 325, 483, 525
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	3 cut(s)	232, 384, 419
SsiI	CCGC	3 cut(s)	75, 115, 544
SspI	AATATT	1 cut(s)	129
SspMI	CTAG	3 cut(s)	138, 350, 489
StyD4I	CCNGG	2 cut(s)	175, 533
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	4 cut(s)	156, 212, 343, 433
TaqI	TCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	232, 384, 419
TatI	WGTACW	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	236, 249
Tru9I	TTAA	2 cut(s)	236, 249
TscAI	CASTG	1 cut(s)	286
TspDTI	ATGAA	5 cut(s)	17, 30, 221, 404, 483
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	2 cut(s)	604, 610
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	3 cut(s)	138, 350, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.