Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Forward (+)

19120728 .. 19124489

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0194600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGAGAGCGTAAGGTTCTGAACAAGTACTACCCGCCGGACTTCGACCCGTCCAAGCTGCCCCGAGTCCGGCGGCCCAAGAACCAGCAGATTAAGGTCCGTATGATGCTTCCGATGAGCATCAGATGCAACACCTGCGGCAACTACATCTACAAGGGCACCAAATTCAACTCCCGGAAAGAAGATGTCGTCGGCGAGACGTACTTGGGAATTCAAATCTTTAGATTTTACTTCAAGTGCACCAAGTGCTCGGCGGAGCTTGCGATGAAGACGGACCCGCAGAACTCAGACTATGTGGTGGAGGCCGGGGCTACACGAAATTTCGAACCTTGGCGTAATGAGGATGAGGAAGTGGATAAGGAGAAGCAGAAGAGGGAGGCCGAAGAAATGGGAGATGCCATGAAATCTTTGGAGAACAGAACCTTGGATTCGAAAAGAGAGATGGATATCCTTGCCGCTTTGGATGAGATGAAGTCCATGAAGTCCAGGCATGCAACTGTGAGTGTGGATGAGATGTTGGAGGCTTTGCAACATACGGTTGCGCACAAGGAGAAAAGGCTGGAAGAAGAGGACGAAGCAGTCATAAAATCGATCGTATTCCATAACTCAAAAGATTATGTTCGAAGGATTGATGATGATGATTTAGATGATGAAGAAGATTTATTAGAGCCGTTAAGTGGCAATGGTGAAACGTCTAATCATCTGTCAAAGAAACAAAAGCTTTCTCAAGATAATAGCAAACCAACAGATTCGTTGACAAAAACCAGTATATCTGACAGCTCAAGGAGCAGAGGAAAACAGAATGGTTCAGAAGATTCTAAAATCATTTTCAAGTCTCCAACTGTTAGGCTTTCAGTAGTAAAGAAACCAGTGGTGGCTAAAGTTAACAATTTGGCGAAAGTGGACGAGAAAGAAGTTGGAGAGGAGTCTAAAAGTGTGACTAAAGATGAGAAGGAAGAGGACGGCAAGAATAAGACCGACGGTGGAAGCAATGTATTACAATCGCTGTTCCAAAACTACAACAGTGATGATAGTGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

347

Amino Acids

39.66

Weight (kDa)

5.49

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saf4_Yju2	PF04502	9 - 344	1.1e-102	Saf4/Yju2 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
AasI	GACNNNNNNGTC	1 cut(s)	578
Acc16I	TGCGCA	1 cut(s)	543
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	6 cut(s)	35, 73, 138, 254, 278, 456
AcsI	RAATTY	3 cut(s)	164, 210, 319
AdeI	CACNNNGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	29, 203
AfiI	CCNNNNNNNGG	2 cut(s)	69, 677
AgsI	TTSAA	4 cut(s)	169, 215, 235, 832
AjnI	CCWGG	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	4 cut(s)	58, 259, 721, 780
AluI	AGCT	4 cut(s)	58, 259, 721, 780
Alw21I	GWGCWC	2 cut(s)	242, 251
Alw26I	GTCTC	2 cut(s)	191, 840
Alw44I	GTGCAC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	74, 303, 378
ApaLI	GTGCAC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	3 cut(s)	164, 210, 319
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	75, 97, 274
AsuC2I	CCSGG	2 cut(s)	175, 307
AsuHPI	GGTGA	1 cut(s)	698
AsuII	TTCGAA	3 cut(s)	324, 431, 622
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	97, 274
BaeGI	GKGCMC	2 cut(s)	161, 242
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	242, 251
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	2 cut(s)	655, 979
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	175, 307
BcoDI	GTCTC	2 cut(s)	191, 840
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	59, 74, 139, 456
BlsI	GCNGC	4 cut(s)	60, 75, 140, 457
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	175, 307, 487
Bme18I	GGWCC	2 cut(s)	97, 274
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	3 cut(s)	75, 97, 274
BmiI	GGNNCC	2 cut(s)	160, 276
BmrFI	CCNGG	3 cut(s)	175, 307, 487
BmsI	GCATC	4 cut(s)	96, 116, 129, 385
BpiI	GAAGAC	1 cut(s)	275
Bpu14I	TTCGAA	3 cut(s)	324, 431, 622
BpuEI	CTTGAG	2 cut(s)	711, 766
BpuMI	CCSGG	2 cut(s)	175, 307
Bsa29I	ATCGAT	1 cut(s)	590
BsaBI	GATNNNNATC	2 cut(s)	119, 446
BsaJI	CCNNGG	3 cut(s)	306, 329, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 677
Bse1I	ACTGG	2 cut(s)	765, 869
Bse3DI	GCAATG	2 cut(s)	688, 997
Bse8I	GATNNNNATC	2 cut(s)	119, 446
BseBI	CCWGG	1 cut(s)	487
BseCI	ATCGAT	1 cut(s)	590
BseDI	CCNNGG	3 cut(s)	306, 329, 423
BseGI	GGATG	3 cut(s)	349, 469, 514
BseJI	GATNNNNATC	2 cut(s)	119, 446
BseLI	CCNNNNNNNGG	2 cut(s)	69, 677
BseMI	GCAATG	2 cut(s)	688, 997
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	765, 869
BseRI	GAGGAG	1 cut(s)	938
BseSI	GKGCMC	2 cut(s)	161, 242
BseXI	GCAGC	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	76, 305, 380
BshNI	GGYRCC	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	2 cut(s)	242, 251
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	4 cut(s)	38, 70, 175, 306
BslI	CCNNNNNNNGG	2 cut(s)	69, 677
BsmAI	GTCTC	2 cut(s)	191, 840
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	76, 305, 380
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	3 cut(s)	324, 431, 622
Bsp1286I	GDGCHC	3 cut(s)	161, 242, 251
Bsp143I	GATC	1 cut(s)	591
BspACI	CCGC	6 cut(s)	35, 73, 138, 254, 278, 456
BspANI	GGCC	3 cut(s)	76, 305, 380
BspCNI	CTCAG	1 cut(s)	299
BspDI	ATCGAT	1 cut(s)	590
BspLI	GGNNCC	2 cut(s)	160, 276
BspMI	ACCTGC	1 cut(s)	143
BspT104I	TTCGAA	3 cut(s)	324, 431, 622
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	688, 997
BsrI	ACTGG	2 cut(s)	765, 869
BssECI	CCNNGG	3 cut(s)	306, 329, 423
BssMI	GATC	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	329, 423
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	5 cut(s)	499, 538, 844, 983, 1025
Bst6I	CTCTTC	3 cut(s)	365, 561, 951
BstAPI	GCANNNNNTGC	3 cut(s)	126, 135, 246
BstBI	TTCGAA	3 cut(s)	324, 431, 622
BstC8I	GCNNGC	2 cut(s)	261, 492
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	349, 469, 514
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	2 cut(s)	191, 840
BstMBI	GATC	1 cut(s)	591
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 135, 246, 260, 786
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	173, 305, 485
BstSLI	GKGCMC	2 cut(s)	161, 242
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	76, 305, 380
BsuTUI	ATCGAT	1 cut(s)	590
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	3 cut(s)	349, 469, 514
BtsIMutI	CAGTG	2 cut(s)	876, 1030
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	261, 492
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	3 cut(s)	75, 97, 274
ClaI	ATCGAT	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	28, 202
CviAII	CATG	3 cut(s)	400, 478, 491
CviQI	GTAC	2 cut(s)	28, 202
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
DraIII	CACNNNGTG	1 cut(s)	246
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
Eam1104I	CTCTTC	3 cut(s)	365, 561, 951
EarI	CTCTTC	3 cut(s)	365, 561, 951
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	329, 423
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	97, 274
Eco88I	CYCGRG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	485
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	329, 423
ErhI	CCWWGG	2 cut(s)	329, 423
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	3 cut(s)	403, 481, 494
FatI	CATG	3 cut(s)	399, 477, 490
FauI	CCCGC	2 cut(s)	42, 285
Fnu4HI	GCNGC	4 cut(s)	59, 74, 139, 456
FokI	GGATG	3 cut(s)	356, 476, 521
Fsp4HI	GCNGC	4 cut(s)	59, 74, 139, 456
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	4 cut(s)	59, 74, 139, 456
HaeIII	GGCC	3 cut(s)	76, 305, 380
HapII	CCGG	4 cut(s)	38, 70, 175, 306
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	3 cut(s)	403, 481, 494
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	2 cut(s)	756, 886
HindII	GTYRAC	2 cut(s)	756, 886
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	5 cut(s)	66, 428, 749, 815, 926
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	4 cut(s)	38, 70, 175, 306
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	4 cut(s)	240, 756, 886, 904
Hpy188I	TCNGA	6 cut(s)	21, 114, 125, 289, 775, 811
Hpy188III	TCNNGA	1 cut(s)	728
Hpy8I	GTNNAC	4 cut(s)	240, 756, 886, 904
Hpy99I	CGWCG	2 cut(s)	194, 983
HpyAV	CCTTC	2 cut(s)	618, 946
HpyCH4III	ACNGT	5 cut(s)	499, 538, 844, 983, 1025
HpyCH4IV	ACGT	2 cut(s)	200, 692
HpyCH4V	TGCA	4 cut(s)	129, 240, 494, 529
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 135, 246, 260, 786
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	2 cut(s)	200, 692
Hsp92II	CATG	3 cut(s)	403, 481, 494
HspAI	GCGC	1 cut(s)	542
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	2 cut(s)	256, 786
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	4 cut(s)	96, 116, 129, 385
MaeII	ACGT	2 cut(s)	200, 692
MaeIII	GTNAC	1 cut(s)	937
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MhlI	GDGCHC	3 cut(s)	161, 242, 251
MluCI	AATT	4 cut(s)	164, 210, 319, 889
MlyI	GAGTC	2 cut(s)	75, 935
MmeI	TCCRAC	3 cut(s)	498, 863, 898
MseI	TTAA	3 cut(s)	93, 674, 885
MspI	CCGG	4 cut(s)	38, 70, 175, 306
MspR9I	CCNGG	3 cut(s)	175, 307, 487
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	5 cut(s)	126, 135, 246, 260, 786
NciI	CCSGG	2 cut(s)	175, 307
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	403, 481, 494
NlaIV	GGNNCC	2 cut(s)	160, 276
NmeAIII	GCCGAG	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	937
NsbI	TGCGCA	1 cut(s)	543
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	3 cut(s)	324, 431, 622
PaeI	GCATGC	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	428, 749, 815
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	60, 75, 140, 457
Ple19I	CGATCG	1 cut(s)	594
PleI	GAGTC	2 cut(s)	74, 934
PpsI	GAGTC	2 cut(s)	74, 934
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	160, 276
PspPI	GGNCC	3 cut(s)	75, 97, 274
PsrI	GAACNNNNNNTAC	2 cut(s)	14, 46
PvuI	CGATCG	1 cut(s)	594
RsaI	GTAC	2 cut(s)	29, 203
RsaNI	GTAC	2 cut(s)	28, 202
SaqAI	TTAA	3 cut(s)	93, 674, 885
SatI	GCNGC	4 cut(s)	59, 74, 139, 456
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	3 cut(s)	75, 97, 274
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	2 cut(s)	75, 935
ScrFI	CCNGG	3 cut(s)	175, 307, 487
SduI	GDGCHC	3 cut(s)	161, 242, 251
SfaNI	GCATC	4 cut(s)	96, 116, 129, 385
SfuI	TTCGAA	3 cut(s)	324, 431, 622
SinI	GGWCC	2 cut(s)	97, 274
SmlI	CTYRAG	2 cut(s)	726, 781
SmoI	CTYRAG	2 cut(s)	726, 781
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	4 cut(s)	164, 210, 319, 889
SsiI	CCGC	6 cut(s)	35, 73, 138, 254, 278, 456
StyD4I	CCNGG	3 cut(s)	173, 305, 485
StyI	CCWWGG	2 cut(s)	329, 423
TaaI	ACNGT	5 cut(s)	499, 538, 844, 983, 1025
TaiI	ACGT	2 cut(s)	203, 695
TaqI	TCGA	5 cut(s)	45, 324, 431, 590, 622
TaqII	GACCGA	1 cut(s)	992
TasI	AATT	4 cut(s)	164, 210, 319, 889
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	3 cut(s)	76, 141, 458
TfiI	GAWTC	3 cut(s)	428, 749, 815
Tru1I	TTAA	3 cut(s)	93, 674, 885
Tru9I	TTAA	3 cut(s)	93, 674, 885
TscAI	CASTG	2 cut(s)	876, 1030
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	5 cut(s)	281, 416, 485, 494, 666
TspGWI	ACGGA	2 cut(s)	89, 287
TspRI	CASTG	2 cut(s)	876, 1030
VneI	GTGCAC	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	97, 274
XapI	RAATTY	3 cut(s)	164, 210, 319
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.