Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Reverse (-)

26404869 .. 26409518

Gene Structure 4650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1192400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATATCTGAACTGAGTACATTGCCTGCAGGTCCTGACACCCAGCGTCATGTCTCTGCTATACGGCGGAAGATTACAATATTGGGGACTAGACTTGATAGCTTACAGTCCCTTCTGTCAAAACTCCCTGGAAAACAGCACATATCAGAGAAAGAGATGAATCGTCGAAAGGATATGATAGGAAATTTAAGATCGAAAGTGAAGCAGATGGCTTCAACATTGACGTCCAACTCTTCCAACCGAGATAGCTTGCTGGGGCCAGAAATAAATAAAACTGATGCCATGGGAAGAACAGTTGGACTAGACAACTACGGCCTTGTTGGTTTGCAACGACAAATTATGAAAGGCAAGCTCCTTATCCCAGATCTAACTATTTGTTCAGAGCAAGATGAGGGGCTTGAGAAATTGGAGGAGACTGTAATAAGCACAAAACATATTGCATTGGCAGTCAATGAAGAACTTGACCTACACACTAGACTTATTGATGACTTGGATGATCATGTGGAAGTTACGGACTCTCGGCTACGGCGGGTGCAGAAGAACTTGGCAGTTTTGAACAAGCGGACAAAGGGTGGTTGCTCTTGCATGTGCATGCTTTTATCTGTCGTCGGGATCGTAGTTCTGATTGCTGTGATATTTTTGCTGATCAAATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

220

Amino Acids

24.34

Weight (kDa)

9.06

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	160 - 210	5.6e-11	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	20
AciI	CCGC	3 cut(s)	67, 529, 562
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	216, 556
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	102, 249, 352
AluI	AGCT	3 cut(s)	102, 249, 352
Alw26I	GTCTC	2 cut(s)	58, 407
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	2 cut(s)	257, 313
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	32, 257
AvaII	GGWCC	1 cut(s)	32
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	3 cut(s)	80, 328, 542
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	2 cut(s)	496, 645
BcoDI	GTCTC	2 cut(s)	58, 407
BfaI	CTAG	3 cut(s)	90, 302, 474
BfmI	CTRYAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	20
BglII	AGATCT	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 257
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	127, 282
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	127, 282
BseGI	GGATG	1 cut(s)	499
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	425
BseYI	CCCAGC	2 cut(s)	42, 253
BsgI	GTGCAG	1 cut(s)	554
BshFI	GGCC	2 cut(s)	259, 315
BslFI	GGGAC	2 cut(s)	94, 100
BsmAI	GTCTC	2 cut(s)	58, 407
BsmFI	GGGAC	2 cut(s)	94, 100
BsnI	GGCC	2 cut(s)	259, 315
Bsp143I	GATC	5 cut(s)	191, 364, 496, 612, 645
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	3 cut(s)	67, 529, 562
BspANI	GGCC	2 cut(s)	259, 315
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	127, 282
BssMI	GATC	5 cut(s)	191, 364, 496, 612, 645
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	108, 295, 418
Bst6I	CTCTTC	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	27, 251, 350, 593
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	5 cut(s)	194, 367, 499, 615, 648
BstMAI	GTCTC	2 cut(s)	58, 407
BstMBI	GATC	5 cut(s)	191, 364, 496, 612, 645
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	2 cut(s)	589, 595
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	259, 315
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	4 cut(s)	27, 251, 350, 593
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	32, 257
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	5 cut(s)	50, 283, 500, 586, 592
CviJI	RGCY	8 cut(s)	102, 212, 249, 259, 315, 352, 397, 523
CviKI_1	RGCY	8 cut(s)	102, 212, 249, 259, 315, 352, 397, 523
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	5 cut(s)	193, 366, 498, 614, 647
DpnII	GATC	5 cut(s)	191, 364, 496, 612, 645
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	53, 286, 503, 589, 595
FaqI	GGGAC	2 cut(s)	94, 100
FatI	CATG	5 cut(s)	49, 282, 499, 585, 591
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	2 cut(s)	496, 645
FokI	GGATG	1 cut(s)	506
FspBI	CTAG	3 cut(s)	90, 302, 474
GsaI	CCCAGC	2 cut(s)	46, 257
HaeIII	GGCC	2 cut(s)	259, 315
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	5 cut(s)	53, 286, 503, 589, 595
HinfI	GANTC	2 cut(s)	160, 515
Hpy188I	TCNGA	4 cut(s)	10, 148, 382, 624
Hpy188III	TCNNGA	2 cut(s)	35, 610
Hpy99I	CGWCG	2 cut(s)	168, 611
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	3 cut(s)	108, 295, 418
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	29, 328, 440, 535, 585, 591
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	5 cut(s)	53, 286, 503, 589, 595
Ksp22I	TGATCA	2 cut(s)	496, 645
Kzo9I	GATC	5 cut(s)	191, 364, 496, 612, 645
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	9 cut(s)	15, 39, 48, 56, 114, 141, 239, 273, 375
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	90, 302, 474
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	5 cut(s)	193, 366, 498, 614, 647
MboI	GATC	5 cut(s)	191, 364, 496, 612, 645
MboII	GAAGA	5 cut(s)	82, 225, 300, 467, 550
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	3 cut(s)	184, 336, 404
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	3 cut(s)	252, 261, 277
MnlI	CCTC	2 cut(s)	385, 403
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	5 cut(s)	191, 364, 496, 612, 645
NlaIII	CATG	5 cut(s)	53, 286, 503, 589, 595
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	499
NspI	RCATGY	2 cut(s)	589, 595
PaeI	GCATGC	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	2 cut(s)	42, 253
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	32, 257
PspPPI	RGGWCCY	1 cut(s)	32
PsrI	GAACNNNNNNTAC	2 cut(s)	450, 482
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	1 cut(s)	188
Sau3AI	GATC	5 cut(s)	191, 364, 496, 612, 645
Sau96I	GGNCC	2 cut(s)	32, 257
SbfI	CCTGCAGG	1 cut(s)	31
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	129
SdaI	CCTGCAGG	1 cut(s)	31
SetI	ASST	6 cut(s)	34, 104, 227, 251, 354, 468
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	595
Sse8387I	CCTGCAGG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	184, 336, 404
SsiI	CCGC	3 cut(s)	67, 529, 562
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	3 cut(s)	90, 302, 474
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	108, 295, 418
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	166, 194
TasI	AATT	3 cut(s)	184, 336, 404
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	173, 356, 468
TspGWI	ACGGA	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	2 cut(s)	589, 595
XspI	CTAG	3 cut(s)	90, 302, 474
ZraI	GACGTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.