Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Reverse (-)

15823208 .. 15825291

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14480.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATATCCGAACTGAGTACATTGCCTGCAGGTCCTGACACCCAGCGTCATGTCTCTGCTATACGGCGGAAGATTACAATATTGGGGACTAGACTTGATAGCTTACAGTCCCTTCTGTCAAAACTCCCTGGAAAACAGCACATATCAGAGAAAGAGATGAATCGTCGAAAGGATATGATAGGAAATTTAAGATCGAAAGTGAAGCAGATGGCTTCAACATTGACGTCCAACTCTTCCAACCGAGATAGCTTGCTGGGGTCAGAAATAAATAAAACTGATGCCATGGGAAGAACAGTTGGACTAGACAACTACGGCCTTGTTGGTTTGCAAAGACAAATTATGAAAGAGCAAGATGAGGGGCTTGAGAAATTGGAGGAGACTGTAATAAGCACAAAACATATTGCATTGGCAGTCAATGAAGAACTTGACCTACACACTAGACTTATTGTATGTCCTTGCGTTCTAGATGACTTGGATCGATCATGTGGAAGTTACGGACTCTCGGCTACGGCGGGTGCAGAAGAACTTGGCAGTTTTGAACAAGCGGACAAAGGGTGGTTGCTCTTGCATGTGCATGCTTTTATCTGTCGTCGGGATAGTAGTTCTGATTGCTGTGATTTTTTTGCTGATCAAATACTTGTAATCATGCCAACTATAAGTCTATACCGAGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

226

Amino Acids

24.91

Weight (kDa)

6.08

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	20
AciI	CCGC	3 cut(s)	67, 512, 545
AclWI	GGATC	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	216, 539
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	102, 249
AluI	AGCT	2 cut(s)	102, 249
Alw26I	GTCTC	2 cut(s)	58, 371
AlwI	GGATC	1 cut(s)	483
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	32
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	3 cut(s)	80, 328, 525
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	58, 371
BfaI	CTAG	4 cut(s)	90, 302, 438, 464
BfmI	CTRYAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	478
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	127, 282
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	127, 282
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	389
BseYI	CCCAGC	2 cut(s)	42, 253
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	478
BslFI	GGGAC	2 cut(s)	94, 100
BsmAI	GTCTC	2 cut(s)	58, 371
BsmFI	GGGAC	2 cut(s)	94, 100
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	191, 475, 479, 628
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	3 cut(s)	67, 512, 545
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	674
BspMAI	CTGCAG	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	127, 282
BssMI	GATC	4 cut(s)	191, 475, 479, 628
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	108, 295, 382
Bst6I	CTCTTC	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	27, 251, 576
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	282
BstKTI	GATC	4 cut(s)	194, 478, 482, 631
BstMAI	GTCTC	2 cut(s)	58, 371
BstMBI	GATC	4 cut(s)	191, 475, 479, 628
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	2 cut(s)	572, 578
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	478
BtgI	CCRYGG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	3 cut(s)	27, 251, 576
CaiI	CAGNNNCTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	674
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	478
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	7 cut(s)	50, 283, 483, 569, 575, 646, 675
CviJI	RGCY	6 cut(s)	102, 212, 249, 315, 361, 506
CviKI_1	RGCY	6 cut(s)	102, 212, 249, 315, 361, 506
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	4 cut(s)	193, 477, 481, 630
DpnII	GATC	4 cut(s)	191, 475, 479, 628
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	7 cut(s)	53, 286, 486, 572, 578, 649, 678
FaqI	GGGAC	2 cut(s)	94, 100
FatI	CATG	7 cut(s)	49, 282, 482, 568, 574, 645, 674
FauI	CCCGC	1 cut(s)	505
FbaI	TGATCA	1 cut(s)	628
FspBI	CTAG	4 cut(s)	90, 302, 438, 464
GsaI	CCCAGC	2 cut(s)	46, 257
HaeIII	GGCC	1 cut(s)	315
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	7 cut(s)	53, 286, 486, 572, 578, 649, 678
HinfI	GANTC	3 cut(s)	160, 498, 669
Hpy188I	TCNGA	4 cut(s)	10, 148, 262, 607
Hpy188III	TCNNGA	4 cut(s)	35, 464, 593, 675
Hpy99I	CGWCG	2 cut(s)	168, 594
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	3 cut(s)	108, 295, 382
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	29, 328, 404, 518, 568, 574
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	7 cut(s)	53, 286, 486, 572, 578, 649, 678
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	191, 475, 479, 628
LpnPI	CCDG	7 cut(s)	15, 39, 48, 56, 114, 141, 239
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	4 cut(s)	90, 302, 438, 464
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	4 cut(s)	193, 477, 481, 630
MboI	GATC	4 cut(s)	191, 475, 479, 628
MboII	GAAGA	5 cut(s)	82, 225, 300, 431, 533
MluCI	AATT	3 cut(s)	184, 336, 368
MlyI	GAGTC	2 cut(s)	492, 678
MmeI	TCCRAC	3 cut(s)	252, 261, 277
MnlI	CCTC	2 cut(s)	349, 367
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	191, 475, 479, 628
NlaIII	CATG	7 cut(s)	53, 286, 486, 572, 578, 649, 678
NmeAIII	GCCGAG	1 cut(s)	482
NspI	RCATGY	2 cut(s)	572, 578
PaeI	GCATGC	1 cut(s)	578
PagI	TCATGA	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	160
PleI	GAGTC	2 cut(s)	492, 677
PpsI	GAGTC	2 cut(s)	492, 677
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	2 cut(s)	42, 253
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	1 cut(s)	188
Sau3AI	GATC	4 cut(s)	191, 475, 479, 628
Sau96I	GGNCC	1 cut(s)	32
SbfI	CCTGCAGG	1 cut(s)	31
SchI	GAGTC	2 cut(s)	492, 678
ScrFI	CCNGG	1 cut(s)	129
SdaI	CCTGCAGG	1 cut(s)	31
SetI	ASST	5 cut(s)	34, 104, 227, 251, 432
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	578
Sse8387I	CCTGCAGG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	184, 336, 368
SsiI	CCGC	3 cut(s)	67, 512, 545
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	4 cut(s)	90, 302, 438, 464
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	108, 295, 382
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	166, 194, 478
TasI	AATT	3 cut(s)	184, 336, 368
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	173, 356, 432
TspGWI	ACGGA	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	2 cut(s)	572, 578
XspI	CTAG	4 cut(s)	90, 302, 438, 464
ZraI	GACGTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.