Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Forward (+)

14145190 .. 14149460

Gene Structure 4271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTTGAGATCAATTTCGTGATTGGATTTTACAATCGATCATCTTCTTTTTTTTGGCGAATTATGGATTATTTTGGATCGTTTAGTTCAATGGCATCTTCTTCGGACTCATGGATGAAGGAATATAATGAAGCAACAAAACTTGCAGATGATATCAATGGTATGATATCTGAACGGAGTACGTTGCCTGCATCAGGTCCAGACGCTCAGCGTTATGTGTCTGCCATACGGAGGAAGATTACAATATTAGGGACTAGACTTGATAGCTTACAGTCCCTTTTATCAAAACTCCCTGGAAAGCAGCCCATATCAGAGAAAGAGCTGAATCGTCGGAAGGATATGATTGGAACTTTAAGATCGAAAGTTCTACAGATGTCAACAACGCTGACGTCGCACTCTGCGAACCGAGACAGCTTGCTTGGGCCAGAAATAAATAAAGCTGATGCCATGGGAAGAACAGTTGGTCTGGACAACTATGGCCTTGTTGGTCTGCAGCGACAAGTTATGAAAGAGCAAGATGAGGGGCTTGAGAAATTGGAGGAGACTGTAGTAAGCACAAAACATATTGCATTGGCAGTCAATGAGGAACTTGACCTACACGCTAGACTTATCGATGATTTGGATGAACATGTGGAAGTTACAGACTCCCGGCTAAGGCGGGTGCAGAAGAACTTGGCAGTTTTGAACAAGCGCACAAAGGGTGGTTGCTCATGCATGTGCATGCTTCTATGTGTTGTCGGGATTGTGGTTCTGCTTGCCGTGATATTTTTGCTGATCAAATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

263

Amino Acids

29.41

Weight (kDa)

8.29

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	392
AciI	CCGC	1 cut(s)	658
AclWI	GGATC	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	194, 231, 654
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	90, 685
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	267, 322, 414, 440
AluI	AGCT	4 cut(s)	267, 322, 414, 440
Alw26I	GTCTC	2 cut(s)	402, 536
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	2 cut(s)	422, 478
ApeKI	GCWGC	2 cut(s)	301, 493
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	197, 422
AsuC2I	CCSGG	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	313, 505
BceAI	ACGGC	1 cut(s)	743
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	774
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	402, 536
BfaI	CTAG	2 cut(s)	255, 603
BfmI	CTRYAG	3 cut(s)	368, 491, 546
BisI	GCNGC	2 cut(s)	302, 494
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	2 cut(s)	303, 495
Bme1390I	CCNGG	2 cut(s)	294, 649
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	197, 422
BmrFI	CCNGG	2 cut(s)	294, 649
BmsI	GCATC	3 cut(s)	104, 200, 433
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	1 cut(s)	649
Bsa29I	ATCGAT	2 cut(s)	37, 612
BsaHI	GRCGYC	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	292, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 231, 654
BseBI	CCWGG	1 cut(s)	294
BseCI	ATCGAT	2 cut(s)	37, 612
BseDI	CCNNGG	2 cut(s)	292, 447
BseGI	GGATG	2 cut(s)	120, 628
BseLI	CCNNNNNNNGG	3 cut(s)	194, 231, 654
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	313, 505
BsgI	GTGCAG	1 cut(s)	683
BshFI	GGCC	2 cut(s)	424, 480
BshVI	ATCGAT	2 cut(s)	37, 612
BsiSI	CCGG	1 cut(s)	649
BslFI	GGGAC	2 cut(s)	259, 265
BslI	CCNNNNNNNGG	3 cut(s)	194, 231, 654
BsmAI	GTCTC	2 cut(s)	402, 536
BsmFI	GGGAC	2 cut(s)	259, 265
BsnI	GGCC	2 cut(s)	424, 480
Bsp143I	GATC	5 cut(s)	9, 38, 77, 356, 774
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	1 cut(s)	658
BspANI	GGCC	2 cut(s)	424, 480
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	2 cut(s)	37, 612
BspMAI	CTGCAG	1 cut(s)	495
BspPI	GGATC	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	292, 447
BssMI	GATC	5 cut(s)	9, 38, 77, 356, 774
BssNI	GRCGYC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	273, 460, 547
BstACI	GRCGYC	1 cut(s)	389
BstC8I	GCNNGC	4 cut(s)	189, 416, 722, 756
BstDEI	CTNAG	2 cut(s)	207, 653
BstDSI	CCRYGG	1 cut(s)	447
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	120, 628
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	5 cut(s)	12, 41, 80, 359, 777
BstMAI	GTCTC	2 cut(s)	402, 536
BstMBI	GATC	5 cut(s)	9, 38, 77, 356, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	3 cut(s)	632, 718, 724
BstSCI	CCNGG	2 cut(s)	292, 647
BstSFI	CTRYAG	3 cut(s)	368, 491, 546
BstV1I	GCAGC	2 cut(s)	313, 505
Bsu15I	ATCGAT	2 cut(s)	37, 612
BsuRI	GGCC	2 cut(s)	424, 480
BsuTUI	ATCGAT	2 cut(s)	37, 612
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	120, 628
Cac8I	GCNNGC	4 cut(s)	189, 416, 722, 756
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	2 cut(s)	197, 422
ClaI	ATCGAT	2 cut(s)	37, 612
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	6 cut(s)	111, 448, 629, 711, 715, 721
CviJI	RGCY	9 cut(s)	267, 304, 322, 414, 424, 440, 480, 526, 652
CviKI_1	RGCY	9 cut(s)	267, 304, 322, 414, 424, 440, 480, 526, 652
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	207, 653
DpnI	GATC	5 cut(s)	11, 40, 79, 358, 776
DpnII	GATC	5 cut(s)	9, 38, 77, 356, 774
Eco130I	CCWWGG	1 cut(s)	447
Eco32I	GATATC	2 cut(s)	154, 168
Eco47I	GGWCC	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	2 cut(s)	154, 168
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	716
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	6 cut(s)	114, 451, 632, 714, 718, 724
FaqI	GGGAC	2 cut(s)	259, 265
FatI	CATG	6 cut(s)	110, 447, 628, 710, 714, 720
FauI	CCCGC	1 cut(s)	651
FbaI	TGATCA	1 cut(s)	774
Fnu4HI	GCNGC	2 cut(s)	302, 494
FokI	GGATG	2 cut(s)	127, 635
Fsp4HI	GCNGC	2 cut(s)	302, 494
FspBI	CTAG	2 cut(s)	255, 603
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	2 cut(s)	302, 494
HaeIII	GGCC	2 cut(s)	424, 480
HapII	CCGG	1 cut(s)	649
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	693
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	6 cut(s)	114, 451, 632, 714, 718, 724
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	107, 325, 644
HpaII	CCGG	1 cut(s)	649
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	4 cut(s)	106, 172, 313, 333
Hpy188III	TCNNGA	4 cut(s)	19, 200, 467, 739
Hpy8I	GTNNAC	1 cut(s)	378
Hpy99I	CGWCG	2 cut(s)	333, 394
HpyAV	CCTTC	2 cut(s)	112, 328
HpyCH4III	ACNGT	3 cut(s)	273, 460, 547
HpyCH4IV	ACGT	2 cut(s)	182, 389
HpyCH4V	TGCA	7 cut(s)	146, 191, 493, 569, 664, 714, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	2 cut(s)	207, 653
HpySE526I	ACGT	2 cut(s)	182, 389
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	6 cut(s)	114, 451, 632, 714, 718, 724
HspAI	GCGC	1 cut(s)	691
Ksp22I	TGATCA	1 cut(s)	774
Kzo9I	GATC	5 cut(s)	9, 38, 77, 356, 774
LpnPI	CCDG	8 cut(s)	180, 201, 213, 279, 306, 438, 452, 662
Lsp1109I	GCAGC	2 cut(s)	313, 505
LweI	GCATC	3 cut(s)	104, 200, 433
MaeI	CTAG	2 cut(s)	255, 603
MaeII	ACGT	2 cut(s)	182, 389
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	5 cut(s)	11, 40, 79, 358, 776
MboI	GATC	5 cut(s)	9, 38, 77, 356, 774
MboII	GAAGA	6 cut(s)	36, 90, 93, 247, 465, 679
MluCI	AATT	3 cut(s)	13, 60, 533
MlyI	GAGTC	2 cut(s)	101, 638
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	4 cut(s)	225, 514, 532, 577
Mph1103I	ATGCAT	1 cut(s)	716
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	715, 719
MspI	CCGG	1 cut(s)	649
MspR9I	CCNGG	2 cut(s)	294, 649
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	649
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	5 cut(s)	9, 38, 77, 356, 774
NlaIII	CATG	6 cut(s)	114, 451, 632, 714, 718, 724
NsiI	ATGCAT	1 cut(s)	716
NspI	RCATGY	3 cut(s)	632, 718, 724
PaeI	GCATGC	1 cut(s)	724
PciI	ACATGT	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	303, 495
PleI	GAGTC	2 cut(s)	101, 638
PpsI	GAGTC	2 cut(s)	101, 638
PscI	ACATGT	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	197, 422
PsrI	GAACNNNNNNTAC	2 cut(s)	579, 611
PstI	CTGCAG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	2 cut(s)	715, 719
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	302, 494
Sau3AI	GATC	5 cut(s)	9, 38, 77, 356, 774
Sau96I	GGNCC	2 cut(s)	197, 422
SchI	GAGTC	2 cut(s)	101, 638
ScrFI	CCNGG	2 cut(s)	294, 649
SetI	ASST	8 cut(s)	185, 199, 269, 324, 392, 416, 442, 597
SfaNI	GCATC	3 cut(s)	104, 200, 433
SfcI	CTRYAG	3 cut(s)	368, 491, 546
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	715, 719
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	3 cut(s)	13, 60, 533
SsiI	CCGC	1 cut(s)	658
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	2 cut(s)	255, 603
StyD4I	CCNGG	2 cut(s)	292, 647
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	273, 460, 547
TaiI	ACGT	2 cut(s)	185, 392
TaqI	TCGA	3 cut(s)	37, 359, 612
TasI	AATT	3 cut(s)	13, 60, 533
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseI	GCWGC	2 cut(s)	301, 493
TspDTI	ATGAA	4 cut(s)	131, 144, 521, 639
TspGWI	ACGGA	2 cut(s)	190, 244
VpaK11BI	GGWCC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	192
XceI	RCATGY	3 cut(s)	632, 718, 724
XspI	CTAG	2 cut(s)	255, 603
ZraI	GACGTC	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.